Wall clock time and date at job start Tue Mar 31 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47483 * 2 1 4 4 C 1.46505 * 119.99762 * 86.92531 * 3 2 1 5 5 C 1.53000 * 109.46866 * 86.05568 * 4 3 2 6 6 C 1.34769 * 120.00268 * 266.93032 * 3 2 1 7 7 O 1.21276 * 120.00211 * 4.46170 * 6 3 2 8 8 C 1.50709 * 120.00000 * 184.46488 * 6 3 2 9 9 H 1.09002 * 109.46848 * 38.69753 * 8 6 3 10 10 C 1.52999 * 109.46908 * 278.69385 * 8 6 3 11 11 N 1.46500 * 109.47204 * 158.69468 * 8 6 3 12 12 C 1.39080 * 120.00162 * 205.00221 * 11 8 6 13 13 C 1.38741 * 119.65418 * 359.97438 * 12 11 8 14 14 C 1.40780 * 118.66505 * 180.02562 * 13 12 11 15 15 C 1.41554 * 120.99068 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00354 * 26.43202 * 15 14 13 17 17 C 1.40030 * 119.99722 * 206.43907 * 15 14 13 18 18 N 1.30746 * 120.00042 * 14.21318 * 17 15 14 19 19 Si 1.86802 * 119.99894 * 194.21503 * 17 15 14 20 20 H 1.48501 * 109.47061 * 89.99891 * 19 17 15 21 21 H 1.48497 * 109.47028 * 209.99694 * 19 17 15 22 22 H 1.48503 * 109.46976 * 329.99751 * 19 17 15 23 23 C 1.41182 * 118.01513 * 359.97438 * 14 13 12 24 24 C 1.36557 * 119.14834 * 0.02562 * 23 14 13 25 25 N 1.32099 * 121.26565 * 359.71953 * 24 23 14 26 26 H 1.08999 * 109.47517 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46929 * 299.99796 * 1 2 3 28 28 H 1.09005 * 109.46894 * 59.99814 * 1 2 3 29 29 H 1.09009 * 109.47388 * 240.00170 * 2 1 3 30 30 H 1.08997 * 109.47419 * 120.00498 * 2 1 3 31 31 H 1.08995 * 109.47205 * 206.05587 * 4 3 2 32 32 H 1.08999 * 109.47035 * 326.05954 * 4 3 2 33 33 H 1.09001 * 109.46885 * 299.99705 * 5 4 3 34 34 H 1.09000 * 109.47441 * 60.00090 * 5 4 3 35 35 H 1.09003 * 109.47021 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.46475 * 172.95450 * 10 8 6 37 37 H 1.08995 * 109.47448 * 292.95601 * 10 8 6 38 38 H 1.08999 * 109.46792 * 52.96229 * 10 8 6 39 39 H 0.97008 * 119.99962 * 24.99987 * 11 8 6 40 40 H 1.07998 * 120.66992 * 359.97438 * 13 12 11 41 41 H 0.97001 * 120.00081 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.42645 * 179.97438 * 23 14 13 43 43 H 1.08001 * 119.36676 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1984 2.0945 1.2670 5 6 3.5847 1.7835 1.8347 6 6 2.3020 1.9957 -1.1654 7 8 2.0768 1.4352 -2.2170 8 6 2.8990 3.3795 -1.1619 9 1 3.6214 3.4614 -0.3497 10 6 1.7888 4.4134 -0.9634 11 7 3.5716 3.6244 -2.4401 12 6 4.6051 4.5520 -2.5156 13 6 4.9931 5.2417 -1.3760 14 6 6.0412 6.1762 -1.4763 15 6 6.4763 6.9076 -0.3451 16 1 6.3450 6.4985 0.6457 17 6 7.0767 8.1617 -0.5108 18 7 6.9899 8.7816 -1.6587 19 14 8.0019 8.9491 0.9082 20 1 9.4276 8.5363 0.8593 21 1 7.9106 10.4272 0.7992 22 1 7.4031 8.5096 2.1941 23 6 6.6454 6.3622 -2.7387 24 6 6.1954 5.6370 -3.8047 25 7 5.2124 4.7642 -3.6743 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.1080 3.1671 1.0961 32 1 1.4352 1.7739 1.9760 33 1 3.6751 0.7108 2.0056 34 1 4.3480 2.1040 1.1257 35 1 3.7185 2.3138 2.7776 36 1 2.2312 5.4013 -0.8356 37 1 1.1360 4.4176 -1.8362 38 1 1.2086 4.1577 -0.0768 39 1 3.2960 3.1396 -3.2339 40 1 4.5004 5.0659 -0.4312 41 1 7.4062 9.6501 -1.7736 42 1 7.4525 7.0695 -2.8599 43 1 6.6548 5.7767 -4.7721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156364514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:33 Heat of formation + Delta-G solvation = -25.362022 kcal Electronic energy + Delta-G solvation = -23570.867973 eV Core-core repulsion = 20228.904984 eV Total energy + Delta-G solvation = -3341.962989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.49389 -40.19992 -37.45476 -36.91671 -35.75756 -33.26894 -32.56545 -31.83452 -30.35372 -29.22751 -27.79520 -25.83243 -24.57801 -23.80814 -23.19111 -22.23426 -20.03517 -19.58752 -18.38547 -17.88916 -17.26431 -16.71161 -16.48909 -16.42639 -15.78176 -15.59962 -15.12853 -14.89844 -14.79182 -14.55758 -14.23700 -14.19030 -14.01080 -13.50413 -13.43325 -13.38376 -13.14433 -12.92301 -12.85935 -12.79721 -12.63285 -12.48710 -11.97125 -11.92728 -11.88573 -11.71218 -11.25514 -10.91102 -10.70941 -9.89884 -9.83381 -9.78318 -8.66159 -8.28662 -6.52825 0.98724 1.17776 1.41356 1.42680 1.56121 1.62964 1.79834 2.22084 2.54360 2.84852 3.33765 3.80991 3.95471 4.01479 4.11639 4.14513 4.21874 4.25775 4.44557 4.46357 4.53067 4.63646 4.73938 4.75009 4.86495 4.91351 4.98259 4.99600 5.03834 5.05980 5.16030 5.20452 5.29116 5.32594 5.37581 5.57964 5.61722 5.92600 6.11485 6.18554 6.38148 6.55202 6.86615 6.89159 6.99783 7.02290 7.87251 8.32365 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.004101 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.476920 B = 6826.601571 C = 7799.988130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.105 3.895 3 N -0.603 5.603 4 C 0.090 3.910 5 C -0.173 4.173 6 C 0.515 3.485 7 O -0.574 6.574 8 C 0.144 3.856 9 H 0.104 0.896 10 C -0.157 4.157 11 N -0.725 5.725 12 C 0.399 3.601 13 C -0.345 4.345 14 C 0.131 3.869 15 C -0.485 4.485 16 H 0.085 0.915 17 C 0.038 3.962 18 N -0.817 5.817 19 Si 0.988 3.012 20 H -0.263 1.263 21 H -0.269 1.269 22 H -0.253 1.253 23 C -0.265 4.265 24 C 0.114 3.886 25 N -0.639 5.639 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.396 0.604 40 H 0.114 0.886 41 H 0.290 0.710 42 H 0.111 0.889 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.232 -10.216 11.644 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.335 5.335 4 C -0.032 4.032 5 C -0.231 4.231 6 C 0.303 3.697 7 O -0.453 6.453 8 C 0.034 3.966 9 H 0.122 0.878 10 C -0.216 4.216 11 N -0.362 5.362 12 C 0.168 3.832 13 C -0.371 4.371 14 C 0.123 3.877 15 C -0.516 4.516 16 H 0.103 0.897 17 C -0.179 4.179 18 N -0.443 5.443 19 Si 0.808 3.192 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.176 1.176 23 C -0.290 4.290 24 C -0.035 4.035 25 N -0.363 5.363 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.231 0.769 40 H 0.132 0.868 41 H 0.101 0.899 42 H 0.129 0.871 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.618 -10.780 10.429 17.818 hybrid contribution 0.765 0.854 0.300 1.185 sum -8.853 -9.926 10.728 17.088 Atomic orbital electron populations 1.22063 0.94720 1.03127 1.01845 1.21597 0.95308 0.81244 1.03473 1.48089 1.64607 1.14840 1.05978 1.22047 0.98931 0.97950 0.84256 1.22217 0.96167 1.02938 1.01767 1.20788 0.77362 0.87597 0.83970 1.90643 1.54614 1.67469 1.32553 1.20749 0.95798 0.91954 0.88060 0.87810 1.22231 0.97478 0.98796 1.03095 1.44022 1.37051 1.44712 1.10377 1.18119 0.87162 0.88067 0.89898 1.21272 1.07042 1.11242 0.97577 1.17996 0.87670 0.88625 0.93412 1.19868 1.35500 1.02038 0.94199 0.89680 1.26859 0.94214 0.97144 0.99665 1.69852 1.33743 1.13906 1.26798 0.85121 0.78709 0.77313 0.78086 1.18803 1.19367 1.17597 1.21758 1.05891 1.06440 0.94878 1.21723 0.92344 0.91323 0.98122 1.66841 1.16774 1.26509 1.26162 0.89980 0.90873 0.94769 0.92178 0.87570 0.89351 0.86719 0.91495 0.94672 0.89340 0.91740 0.92668 0.88273 0.76877 0.86772 0.89907 0.87106 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.24 71.98 0.74 -1.65 16 2 C 0.11 1.87 6.15 86.38 0.53 2.40 16 3 N -0.60 -12.89 2.47 -821.81 -2.03 -14.93 16 4 C 0.09 1.34 5.68 86.38 0.49 1.83 16 5 C -0.17 -2.72 10.12 71.98 0.73 -1.99 16 6 C 0.52 15.65 6.90 87.66 0.61 16.26 16 7 O -0.57 -21.60 15.52 -3.02 -0.05 -21.64 16 8 C 0.14 4.63 1.82 44.25 0.08 4.71 16 9 H 0.10 3.28 4.61 -2.39 -0.01 3.27 16 10 C -0.16 -4.40 9.03 71.98 0.65 -3.75 16 11 N -0.73 -29.89 5.22 -328.27 -1.71 -31.61 16 12 C 0.40 19.39 7.63 132.90 1.01 20.41 16 13 C -0.34 -17.03 8.68 23.01 0.20 -16.83 16 14 C 0.13 7.10 5.58 -21.12 -0.12 6.98 16 15 C -0.49 -25.21 9.12 23.52 0.21 -25.00 16 16 H 0.09 4.15 7.89 -2.91 -0.02 4.13 16 17 C 0.04 1.84 5.23 85.29 0.45 2.29 16 18 N -0.82 -41.73 10.94 21.84 0.24 -41.50 16 19 Si 0.99 36.22 29.58 68.60 2.03 38.25 16 20 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 21 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 23 C -0.26 -14.30 8.72 22.60 0.20 -14.10 16 24 C 0.11 5.81 11.10 84.26 0.94 6.75 16 25 N -0.64 -32.89 10.37 -194.47 -2.02 -34.91 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.03 0.69 8.14 -2.38 -0.02 0.68 16 29 H 0.06 1.37 7.40 -2.38 -0.02 1.35 16 30 H 0.11 1.24 8.10 -2.39 -0.02 1.22 16 31 H 0.09 1.36 4.70 -2.39 -0.01 1.34 16 32 H 0.11 0.99 8.10 -2.39 -0.02 0.97 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.03 0.76 7.26 -2.39 -0.02 0.75 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 2.03 7.60 -2.39 -0.02 2.01 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 1.98 6.35 -2.39 -0.02 1.97 16 39 H 0.40 16.95 7.87 -92.70 -0.73 16.22 16 40 H 0.11 5.07 5.98 -2.91 -0.02 5.05 16 41 H 0.29 13.33 8.29 -92.71 -0.77 12.56 16 42 H 0.11 6.11 6.29 -2.91 -0.02 6.10 16 43 H 0.14 6.27 8.06 -2.91 -0.02 6.25 16 Total: -1.00 -67.86 348.77 3.47 -64.40 By element: Atomic # 1 Polarization: 43.34 SS G_CDS: 0.29 Total: 43.64 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 6.71 Total: -1.71 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -5.52 Total: -122.93 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -67.86 3.47 -64.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156364514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.035 kcal (2) G-P(sol) polarization free energy of solvation -67.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds