Wall clock time and date at job start Tue Mar 31 2020 07:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47158 * 2 1 4 4 O 1.42900 * 109.46825 * 120.00091 * 2 1 3 5 5 C 1.35677 * 117.00054 * 149.99845 * 4 2 1 6 6 C 1.38943 * 120.02245 * 179.97438 * 5 4 2 7 7 N 1.32087 * 120.10701 * 180.02562 * 6 5 4 8 8 C 1.32034 * 120.14819 * 359.68539 * 7 6 5 9 9 C 1.39160 * 120.03403 * 0.57166 * 8 7 6 10 10 N 1.38996 * 120.04938 * 179.73228 * 9 8 7 11 11 C 1.46498 * 120.00227 * 359.72211 * 10 9 8 12 12 H 1.09000 * 109.41206 * 324.85852 * 11 10 9 13 13 C 1.52952 * 109.41432 * 84.64631 * 11 10 9 14 14 C 1.53670 * 109.32395 * 183.83329 * 13 11 10 15 15 C 1.51258 * 108.31223 * 305.13887 * 14 13 11 16 16 C 1.37879 * 120.85503 * 231.38017 * 15 14 13 17 17 N 1.31520 * 119.99679 * 5.24335 * 16 15 14 18 18 Si 1.86791 * 120.00519 * 185.24232 * 16 15 14 19 19 H 1.48502 * 109.47572 * 180.02562 * 18 16 15 20 20 H 1.48506 * 109.47201 * 299.99992 * 18 16 15 21 21 H 1.48504 * 109.47168 * 59.99851 * 18 16 15 22 22 C 1.51279 * 118.30132 * 51.65486 * 15 14 13 23 23 C 1.52961 * 109.41400 * 205.00400 * 11 10 9 24 24 N 1.32593 * 120.01712 * 0.02562 * 5 4 2 25 25 H 1.09005 * 109.46896 * 300.00185 * 1 2 3 26 26 H 1.08999 * 109.47217 * 59.99779 * 1 2 3 27 27 H 1.08998 * 109.47542 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46896 * 239.99815 * 2 1 3 29 29 H 1.09000 * 109.46920 * 60.00142 * 3 2 1 30 30 H 1.09001 * 109.47002 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47237 * 300.00208 * 3 2 1 32 32 H 1.08002 * 119.94974 * 0.02562 * 6 5 4 33 33 H 1.08000 * 119.98346 * 180.30119 * 8 7 6 34 34 H 0.97006 * 119.99790 * 179.72297 * 10 9 8 35 35 H 1.08998 * 109.48546 * 303.68688 * 13 11 10 36 36 H 1.09006 * 109.48308 * 63.71442 * 13 11 10 37 37 H 1.09005 * 109.68944 * 185.52209 * 14 13 11 38 38 H 1.08997 * 109.78456 * 64.81621 * 14 13 11 39 39 H 0.97000 * 119.99340 * 354.57926 * 17 16 15 40 40 H 1.09003 * 109.61916 * 68.11460 * 22 15 14 41 41 H 1.08989 * 109.62657 * 188.68373 * 22 15 14 42 42 H 1.08996 * 109.48560 * 56.31252 * 23 11 10 43 43 H 1.09003 * 109.49150 * 296.27709 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1986 -1.3131 1.0653 6 6 3.7211 -1.9879 2.1617 7 7 4.8820 -2.6105 2.0650 8 6 5.5474 -2.5994 0.9246 9 6 5.0323 -1.9209 -0.1758 10 7 5.7352 -1.9043 -1.3748 11 6 7.0222 -2.5963 -1.4791 12 1 7.5550 -2.5151 -0.5317 13 6 6.7814 -4.0722 -1.8002 14 6 8.1262 -4.8156 -1.8143 15 6 9.0491 -4.1101 -2.7831 16 6 9.7064 -4.8113 -3.7717 17 7 9.4568 -6.0906 -3.9473 18 14 10.9514 -3.9445 -4.8615 19 1 11.5128 -4.9120 -5.8383 20 1 10.2841 -2.8364 -5.5910 21 1 12.0467 -3.3957 -4.0222 22 6 9.2374 -2.6163 -2.6357 23 6 7.8566 -1.9536 -2.5883 24 7 3.8664 -1.2935 -0.0800 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 3.1772 -2.0034 3.0947 33 1 6.4940 -3.1134 0.8471 34 1 5.3735 -1.4345 -2.1426 35 1 6.1339 -4.5089 -1.0398 36 1 6.3048 -4.1587 -2.7768 37 1 7.9734 -5.8452 -2.1381 38 1 8.5647 -4.8040 -0.8165 39 1 8.8704 -6.5591 -3.3329 40 1 9.7769 -2.4048 -1.7125 41 1 9.7988 -2.2323 -3.4873 42 1 7.9713 -0.8887 -2.3864 43 1 7.3549 -2.0901 -3.5463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:13 Heat of formation + Delta-G solvation = -8.456349 kcal Electronic energy + Delta-G solvation = -23352.184155 eV Core-core repulsion = 20010.954250 eV Total energy + Delta-G solvation = -3341.229904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.13417 -38.98761 -37.70685 -34.99381 -33.77709 -33.08414 -31.60895 -29.84305 -29.21302 -27.52071 -26.81439 -24.66772 -23.35401 -22.27144 -21.51094 -21.16803 -19.68786 -18.42761 -17.82071 -16.80119 -16.41296 -16.02560 -15.76927 -15.30166 -14.70397 -14.44850 -13.99845 -13.82561 -13.73584 -13.16769 -12.76539 -12.66123 -12.53423 -12.43866 -12.32848 -12.10836 -11.80545 -11.56036 -11.36929 -11.28107 -11.09956 -10.86665 -10.73873 -10.51908 -10.26681 -10.19038 -9.70841 -9.61085 -9.15746 -9.08169 -8.62364 -8.38265 -7.55785 -6.51803 -4.12349 1.21688 1.42687 2.80106 3.17591 3.34043 3.36395 3.55534 3.93256 4.39794 4.46864 4.60391 4.69161 4.73074 4.73879 5.02204 5.13384 5.27972 5.30992 5.37905 5.43104 5.48212 5.58544 5.61057 5.69708 5.83666 5.87758 5.94770 6.16554 6.25975 6.37956 6.48153 6.56766 6.62780 6.76084 6.87855 7.00931 7.08527 7.19450 7.21595 7.45118 7.59681 7.73427 7.93584 8.10679 8.21327 8.77450 9.50962 10.85859 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028215 B = 0.003389 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.148536 B = 8259.906098 C = 8691.968583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.167 4.167 4 O -0.297 6.297 5 C 0.327 3.673 6 C -0.050 4.050 7 N -0.369 5.369 8 C -0.053 4.053 9 C 0.408 3.592 10 N -0.701 5.701 11 C 0.160 3.840 12 H 0.076 0.924 13 C -0.119 4.119 14 C 0.004 3.996 15 C -0.573 4.573 16 C 0.036 3.964 17 N -0.904 5.904 18 Si 1.061 2.939 19 H -0.287 1.287 20 H -0.286 1.286 21 H -0.284 1.284 22 C -0.002 4.002 23 C -0.112 4.112 24 N -0.571 5.571 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.401 0.599 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.010 0.990 39 H 0.273 0.727 40 H 0.016 0.984 41 H 0.031 0.969 42 H 0.040 0.960 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.160 12.010 6.640 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.023 3.977 3 C -0.225 4.225 4 O -0.203 6.203 5 C 0.143 3.857 6 C -0.212 4.212 7 N -0.082 5.082 8 C -0.221 4.221 9 C 0.167 3.833 10 N -0.330 5.330 11 C 0.057 3.943 12 H 0.094 0.906 13 C -0.158 4.158 14 C -0.035 4.035 15 C -0.592 4.592 16 C -0.169 4.169 17 N -0.540 5.540 18 Si 0.890 3.110 19 H -0.213 1.213 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.041 4.041 23 C -0.151 4.151 24 N -0.311 5.311 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.183 0.817 33 H 0.186 0.814 34 H 0.236 0.764 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.187 11.709 5.558 17.791 hybrid contribution -1.262 0.543 0.679 1.533 sum -13.449 12.252 6.237 19.232 Atomic orbital electron populations 1.21901 0.92867 1.03015 1.02899 1.22352 0.94411 0.92781 0.88199 1.22202 1.02208 0.95591 1.02465 1.86322 1.31364 1.64116 1.38484 1.20588 0.85769 0.89297 0.90003 1.22316 0.95882 1.04224 0.98797 1.68207 1.04391 1.11637 1.23995 1.23032 1.03603 1.06662 0.88786 1.19123 0.87140 0.88699 0.88375 1.45275 1.21921 1.56233 1.09538 1.21193 0.80508 0.92565 1.00035 0.90648 1.22131 1.00093 0.93804 0.99755 1.19494 0.91191 0.96534 0.96243 1.21001 1.28673 0.92024 1.17493 1.25769 0.98032 0.96088 0.97041 1.70830 1.36105 1.09838 1.37202 0.83618 0.76133 0.74943 0.76276 1.21270 1.21227 1.21050 1.19509 0.91273 0.96371 0.96907 1.21860 0.99209 0.97034 0.96986 1.67373 1.09804 1.27782 1.26095 0.91640 0.90550 0.91800 0.89288 0.92015 0.92004 0.91163 0.81739 0.81366 0.76378 0.94712 0.92721 0.94190 0.97210 0.91458 0.96581 0.95054 0.94148 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.56 37.16 0.36 -0.83 16 2 C 0.08 0.84 3.12 -26.73 -0.08 0.75 16 3 C -0.17 -1.58 9.53 37.16 0.35 -1.23 16 4 O -0.30 -3.81 9.77 -18.73 -0.18 -3.99 16 5 C 0.33 4.75 7.46 -16.96 -0.13 4.62 16 6 C -0.05 -0.72 11.16 -17.18 -0.19 -0.91 16 7 N -0.37 -5.91 10.48 -12.75 -0.13 -6.04 16 8 C -0.05 -0.85 9.94 -17.12 -0.17 -1.02 16 9 C 0.41 6.50 7.64 -154.72 -1.18 5.32 16 10 N -0.70 -10.85 5.24 -53.89 -0.28 -11.13 16 11 C 0.16 2.78 2.04 -67.98 -0.14 2.64 16 12 H 0.08 1.32 6.48 -51.93 -0.34 0.98 16 13 C -0.12 -2.34 5.41 -26.41 -0.14 -2.49 16 14 C 0.00 0.08 5.99 -27.26 -0.16 -0.08 16 15 C -0.57 -14.18 5.50 -98.92 -0.54 -14.72 16 16 C 0.04 0.97 5.46 -17.82 -0.10 0.87 16 17 N -0.90 -25.81 13.66 55.43 0.76 -25.05 16 18 Si 1.06 23.80 27.19 -169.99 -4.62 19.17 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.00 -0.05 5.56 -27.48 -0.15 -0.20 16 23 C -0.11 -2.05 5.40 -26.63 -0.14 -2.19 16 24 N -0.57 -8.75 8.85 -12.31 -0.11 -8.85 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 1.06 7.00 -51.93 -0.36 0.69 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.17 2.69 6.09 -52.49 -0.32 2.37 16 34 H 0.40 5.76 8.73 -40.82 -0.36 5.40 16 35 H 0.03 0.65 7.65 -51.93 -0.40 0.25 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.04 0.99 5.80 -51.93 -0.30 0.69 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.27 7.72 6.36 -40.82 -0.26 7.46 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.03 0.66 5.25 -51.93 -0.27 0.39 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -27.60 341.26 -8.33 -35.94 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.48 Total: 4.28 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -2.43 Total: -9.47 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.23 Total: -51.08 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.18 Total: -3.99 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.62 Total: 19.17 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.60 -8.33 -35.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.479 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds