Wall clock time and date at job start Tue Mar 31 2020 07:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47158 * 2 1 4 4 O 1.42900 * 109.46825 * 120.00091 * 2 1 3 5 5 C 1.35677 * 117.00054 * 149.99845 * 4 2 1 6 6 C 1.38943 * 120.02245 * 179.97438 * 5 4 2 7 7 N 1.32087 * 120.10701 * 180.02562 * 6 5 4 8 8 C 1.32034 * 120.14819 * 359.68539 * 7 6 5 9 9 C 1.39160 * 120.03403 * 0.57166 * 8 7 6 10 10 N 1.38996 * 120.04938 * 179.73228 * 9 8 7 11 11 C 1.46498 * 120.00227 * 359.72211 * 10 9 8 12 12 H 1.09000 * 109.41206 * 324.85852 * 11 10 9 13 13 C 1.52952 * 109.41432 * 84.64631 * 11 10 9 14 14 C 1.53670 * 109.32395 * 183.83329 * 13 11 10 15 15 C 1.51258 * 108.31223 * 305.13887 * 14 13 11 16 16 C 1.37879 * 120.85503 * 231.38017 * 15 14 13 17 17 N 1.31520 * 119.99679 * 5.24335 * 16 15 14 18 18 Si 1.86791 * 120.00519 * 185.24232 * 16 15 14 19 19 H 1.48502 * 109.47572 * 180.02562 * 18 16 15 20 20 H 1.48506 * 109.47201 * 299.99992 * 18 16 15 21 21 H 1.48504 * 109.47168 * 59.99851 * 18 16 15 22 22 C 1.51279 * 118.30132 * 51.65486 * 15 14 13 23 23 C 1.52961 * 109.41400 * 205.00400 * 11 10 9 24 24 N 1.32593 * 120.01712 * 0.02562 * 5 4 2 25 25 H 1.09005 * 109.46896 * 300.00185 * 1 2 3 26 26 H 1.08999 * 109.47217 * 59.99779 * 1 2 3 27 27 H 1.08998 * 109.47542 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46896 * 239.99815 * 2 1 3 29 29 H 1.09000 * 109.46920 * 60.00142 * 3 2 1 30 30 H 1.09001 * 109.47002 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47237 * 300.00208 * 3 2 1 32 32 H 1.08002 * 119.94974 * 0.02562 * 6 5 4 33 33 H 1.08000 * 119.98346 * 180.30119 * 8 7 6 34 34 H 0.97006 * 119.99790 * 179.72297 * 10 9 8 35 35 H 1.08998 * 109.48546 * 303.68688 * 13 11 10 36 36 H 1.09006 * 109.48308 * 63.71442 * 13 11 10 37 37 H 1.09005 * 109.68944 * 185.52209 * 14 13 11 38 38 H 1.08997 * 109.78456 * 64.81621 * 14 13 11 39 39 H 0.97000 * 119.99340 * 354.57926 * 17 16 15 40 40 H 1.09003 * 109.61916 * 68.11460 * 22 15 14 41 41 H 1.08989 * 109.62657 * 188.68373 * 22 15 14 42 42 H 1.08996 * 109.48560 * 56.31252 * 23 11 10 43 43 H 1.09003 * 109.49150 * 296.27709 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1986 -1.3131 1.0653 6 6 3.7211 -1.9879 2.1617 7 7 4.8820 -2.6105 2.0650 8 6 5.5474 -2.5994 0.9246 9 6 5.0323 -1.9209 -0.1758 10 7 5.7352 -1.9043 -1.3748 11 6 7.0222 -2.5963 -1.4791 12 1 7.5550 -2.5151 -0.5317 13 6 6.7814 -4.0722 -1.8002 14 6 8.1262 -4.8156 -1.8143 15 6 9.0491 -4.1101 -2.7831 16 6 9.7064 -4.8113 -3.7717 17 7 9.4568 -6.0906 -3.9473 18 14 10.9514 -3.9445 -4.8615 19 1 11.5128 -4.9120 -5.8383 20 1 10.2841 -2.8364 -5.5910 21 1 12.0467 -3.3957 -4.0222 22 6 9.2374 -2.6163 -2.6357 23 6 7.8566 -1.9536 -2.5883 24 7 3.8664 -1.2935 -0.0800 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 3.1772 -2.0034 3.0947 33 1 6.4940 -3.1134 0.8471 34 1 5.3735 -1.4345 -2.1426 35 1 6.1339 -4.5089 -1.0398 36 1 6.3048 -4.1587 -2.7768 37 1 7.9734 -5.8452 -2.1381 38 1 8.5647 -4.8040 -0.8165 39 1 8.8704 -6.5591 -3.3329 40 1 9.7769 -2.4048 -1.7125 41 1 9.7988 -2.2323 -3.4873 42 1 7.9713 -0.8887 -2.3864 43 1 7.3549 -2.0901 -3.5463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:12 Heat of formation + Delta-G solvation = -25.725435 kcal Electronic energy + Delta-G solvation = -23352.932998 eV Core-core repulsion = 20010.954250 eV Total energy + Delta-G solvation = -3341.978748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.29124 -40.09226 -39.13152 -36.47625 -34.92295 -34.26496 -33.12976 -31.53823 -30.47889 -28.43661 -28.19057 -25.82204 -24.74584 -23.85596 -22.87386 -22.41439 -21.22727 -19.54702 -19.02622 -18.46471 -17.68830 -17.18408 -16.91332 -16.72416 -15.73599 -15.67444 -15.49292 -15.36746 -14.88883 -14.51697 -14.20508 -13.84534 -13.82041 -13.48024 -13.41182 -13.22407 -13.00034 -12.91379 -12.68056 -12.64880 -12.41354 -12.19783 -12.01286 -11.93683 -11.91922 -11.72304 -11.39279 -11.22960 -10.58878 -10.43165 -10.29567 -10.21969 -8.79469 -8.55950 -6.15105 0.03446 0.23258 1.54162 1.59707 1.71470 1.78649 2.02304 2.57705 2.74547 3.17382 3.33630 3.49678 3.57557 3.87475 3.90363 3.99290 4.08496 4.16796 4.24111 4.33552 4.45548 4.61754 4.67151 4.76282 4.80547 4.83151 4.85728 4.88827 4.94770 4.96310 5.12093 5.15782 5.19905 5.22503 5.24500 5.28350 5.49812 5.69748 5.74834 5.99255 6.04817 6.25373 6.38342 6.54201 6.76456 6.91578 7.55752 8.81215 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028215 B = 0.003389 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.148536 B = 8259.906098 C = 8691.968583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 C -0.162 4.162 4 O -0.297 6.297 5 C 0.325 3.675 6 C -0.046 4.046 7 N -0.383 5.383 8 C -0.068 4.068 9 C 0.400 3.600 10 N -0.695 5.695 11 C 0.175 3.825 12 H 0.079 0.921 13 C -0.106 4.106 14 C -0.002 4.002 15 C -0.575 4.575 16 C -0.019 4.019 17 N -0.947 5.947 18 Si 1.096 2.904 19 H -0.300 1.300 20 H -0.263 1.263 21 H -0.266 1.266 22 C -0.009 4.009 23 C -0.106 4.106 24 N -0.572 5.572 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.192 0.808 33 H 0.166 0.834 34 H 0.408 0.592 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.012 0.988 38 H 0.009 0.991 39 H 0.259 0.741 40 H 0.023 0.977 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.463 14.821 7.181 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 C -0.219 4.219 4 O -0.202 6.202 5 C 0.141 3.859 6 C -0.209 4.209 7 N -0.096 5.096 8 C -0.235 4.235 9 C 0.160 3.840 10 N -0.325 5.325 11 C 0.071 3.929 12 H 0.097 0.903 13 C -0.145 4.145 14 C -0.040 4.040 15 C -0.594 4.594 16 C -0.217 4.217 17 N -0.586 5.586 18 Si 0.920 3.080 19 H -0.227 1.227 20 H -0.188 1.188 21 H -0.191 1.191 22 C -0.047 4.047 23 C -0.144 4.144 24 N -0.311 5.311 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.209 0.791 33 H 0.183 0.817 34 H 0.245 0.755 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.030 0.970 38 H 0.028 0.972 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.510 14.557 6.111 20.779 hybrid contribution -1.002 -0.301 0.644 1.228 sum -14.512 14.256 6.754 21.435 Atomic orbital electron populations 1.21909 0.90611 1.03277 1.04331 1.22630 0.96121 0.92965 0.86807 1.22171 1.00819 0.95064 1.03884 1.86336 1.30370 1.63917 1.39625 1.20758 0.86205 0.89189 0.89767 1.22782 0.95331 1.03032 0.99778 1.68211 1.05142 1.12224 1.24053 1.23018 1.03883 1.07372 0.89221 1.19108 0.87491 0.89089 0.88315 1.44921 1.21351 1.56370 1.09848 1.20853 0.81373 0.90779 0.99943 0.90310 1.21923 0.97844 0.95554 0.99184 1.19504 0.93156 0.95578 0.95802 1.21603 1.27188 0.94175 1.16446 1.26993 0.99598 0.96014 0.99082 1.70936 1.38067 1.11298 1.38270 0.83184 0.75048 0.74560 0.75223 1.22725 1.18810 1.19097 1.19565 0.93477 0.94155 0.97510 1.21720 0.97136 0.98489 0.97052 1.67387 1.09523 1.27601 1.26611 0.90812 0.88505 0.92147 0.90709 0.91181 0.94043 0.89199 0.79145 0.81698 0.75538 0.94043 0.94196 0.96962 0.97220 0.92948 0.95839 0.94395 0.91124 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.56 71.98 0.69 -1.20 16 2 C 0.07 1.35 3.12 30.59 0.10 1.44 16 3 C -0.16 -2.68 9.53 71.98 0.69 -2.00 16 4 O -0.30 -6.99 9.77 -89.95 -0.88 -7.87 16 5 C 0.32 8.86 7.46 84.75 0.63 9.49 16 6 C -0.05 -1.23 11.16 84.82 0.95 -0.29 16 7 N -0.38 -11.76 10.48 -194.24 -2.04 -13.80 16 8 C -0.07 -2.14 9.94 84.88 0.84 -1.30 16 9 C 0.40 12.20 7.64 132.97 1.02 13.22 16 10 N -0.70 -20.33 5.24 -324.41 -1.70 -22.03 16 11 C 0.17 5.80 2.04 44.96 0.09 5.90 16 12 H 0.08 2.62 6.48 -2.39 -0.02 2.61 16 13 C -0.11 -4.17 5.41 30.80 0.17 -4.00 16 14 C 0.00 -0.10 5.99 30.25 0.18 0.08 16 15 C -0.57 -28.49 5.50 -16.17 -0.09 -28.58 16 16 C -0.02 -1.01 5.46 84.65 0.46 -0.55 16 17 N -0.95 -56.13 13.66 21.45 0.29 -55.83 16 18 Si 1.10 47.57 27.19 68.60 1.87 49.43 16 19 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 22 C -0.01 -0.36 5.56 30.11 0.17 -0.19 16 23 C -0.11 -3.58 5.40 30.66 0.17 -3.42 16 24 N -0.57 -16.63 8.85 -305.56 -2.70 -19.33 16 25 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.65 7.00 -2.38 -0.02 1.63 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.17 5.18 6.09 -2.91 -0.02 5.16 16 34 H 0.41 10.89 8.73 -92.70 -0.81 10.08 16 35 H 0.04 1.56 7.65 -2.39 -0.02 1.54 16 36 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.01 0.63 5.80 -2.38 -0.01 0.61 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.26 15.49 6.36 -92.71 -0.59 14.90 16 40 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.04 1.49 5.25 -2.39 -0.01 1.48 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -60.25 341.26 1.28 -58.97 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.39 Total: 21.85 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 6.05 Total: -11.39 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -6.15 Total: -110.99 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.88 Total: -7.87 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.87 Total: 49.43 kcal Total: -60.25 1.28 -58.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.241 kcal (2) G-P(sol) polarization free energy of solvation -60.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds