Wall clock time and date at job start Tue Mar 31 2020 07:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46875 * 2 1 4 4 O 1.42903 * 109.47182 * 119.99835 * 2 1 3 5 5 C 1.35751 * 116.99767 * 89.99948 * 4 2 1 6 6 N 1.32259 * 120.12207 * 0.29332 * 5 4 2 7 7 C 1.32419 * 120.02078 * 180.25311 * 6 5 4 8 8 C 1.37950 * 120.25663 * 359.74941 * 7 6 5 9 9 N 1.32391 * 120.23658 * 359.96031 * 8 7 6 10 10 C 1.32465 * 119.97843 * 0.02562 * 9 8 7 11 11 N 1.39177 * 120.12882 * 180.02562 * 10 9 8 12 12 C 1.46500 * 120.00197 * 0.02562 * 11 10 9 13 13 H 1.09003 * 109.41302 * 34.99469 * 12 11 10 14 14 C 1.52954 * 109.41368 * 154.85666 * 12 11 10 15 15 C 1.53237 * 109.40308 * 183.63117 * 14 12 11 16 16 C 1.51272 * 108.53618 * 305.37408 * 15 14 12 17 17 C 1.37879 * 120.84479 * 231.32368 * 16 15 14 18 18 N 1.31510 * 120.00107 * 348.93137 * 17 16 15 19 19 Si 1.86804 * 119.99787 * 168.92678 * 17 16 15 20 20 H 1.48504 * 109.46730 * 354.66267 * 19 17 16 21 21 H 1.48501 * 109.46848 * 114.65900 * 19 17 16 22 22 H 1.48496 * 109.47341 * 234.66424 * 19 17 16 23 23 C 1.51262 * 118.30221 * 51.34401 * 16 15 14 24 24 C 1.52962 * 109.35107 * 275.17170 * 12 11 10 25 25 H 1.09002 * 109.47167 * 299.99932 * 1 2 3 26 26 H 1.08994 * 109.47364 * 60.00476 * 1 2 3 27 27 H 1.09003 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47051 * 239.99571 * 2 1 3 29 29 H 1.09006 * 109.46707 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47336 * 299.99447 * 3 2 1 31 31 H 1.08998 * 109.47632 * 59.99926 * 3 2 1 32 32 H 1.08004 * 119.86966 * 179.72823 * 7 6 5 33 33 H 1.07998 * 119.88339 * 179.97438 * 8 7 6 34 34 H 0.96998 * 119.99785 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.48427 * 303.60750 * 14 12 11 36 36 H 1.08999 * 109.48753 * 63.64005 * 14 12 11 37 37 H 1.09000 * 109.62144 * 65.08504 * 15 14 12 38 38 H 1.08996 * 109.62873 * 185.65360 * 15 14 12 39 39 H 0.97007 * 119.99472 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.62541 * 68.36659 * 23 16 15 41 41 H 1.09002 * 109.62818 * 188.94125 * 23 16 15 42 42 H 1.08993 * 109.48441 * 296.30991 * 24 12 11 43 43 H 1.09000 * 109.48076 * 56.35267 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2118 -2.0116 1.0652 6 7 1.9779 -2.6341 -0.0780 7 6 2.1742 -3.9402 -0.1735 8 6 2.6275 -4.6564 0.9150 9 7 2.8703 -4.0426 2.0626 10 6 2.6775 -2.7364 2.1684 11 7 2.9322 -2.0879 3.3732 12 6 3.4152 -2.8499 4.5275 13 1 4.0734 -3.6484 4.1848 14 6 4.1888 -1.9197 5.4633 15 6 4.7707 -2.7339 6.6237 16 6 3.6451 -3.4934 7.2903 17 6 3.4576 -3.4260 8.6546 18 7 4.3781 -2.8798 9.4187 19 14 1.8959 -4.1104 9.4177 20 1 0.9707 -4.5492 8.3421 21 1 2.2343 -5.2690 10.2828 22 1 1.2412 -3.0571 10.2345 23 6 2.7309 -4.3290 6.4220 24 6 2.2229 -3.4570 5.2689 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.9783 -4.4468 -1.1070 33 1 2.7851 -5.7214 0.8306 34 1 2.7900 -1.1314 3.4487 35 1 4.9988 -1.4415 4.9125 36 1 3.5161 -1.1570 5.8555 37 1 5.5113 -3.4369 6.2423 38 1 5.2367 -2.0623 7.3447 39 1 4.2459 -2.8321 10.3785 40 1 3.2826 -5.1797 6.0220 41 1 1.8862 -4.6823 7.0135 42 1 1.5967 -2.6581 5.6659 43 1 1.6396 -4.0683 4.5804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:16 Heat of formation + Delta-G solvation = -1.496809 kcal Electronic energy + Delta-G solvation = -23644.288010 eV Core-core repulsion = 20303.359894 eV Total energy + Delta-G solvation = -3340.928116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08530 -38.62061 -37.54778 -34.78215 -33.66907 -32.75057 -31.59501 -29.76852 -29.18551 -27.44019 -26.94950 -24.49360 -23.39869 -21.74732 -21.45013 -21.17034 -19.49793 -18.44373 -17.75966 -17.06514 -16.03366 -15.88121 -15.13116 -14.78018 -14.48216 -14.38955 -14.37012 -13.75125 -13.26079 -13.01078 -12.76554 -12.60998 -12.47582 -12.38726 -12.17762 -12.12177 -11.82766 -11.46076 -11.33777 -11.09370 -10.92542 -10.79737 -10.75058 -10.56292 -10.09702 -9.97011 -9.59105 -9.29481 -9.10281 -8.84385 -8.58746 -8.38071 -7.22643 -6.10595 -3.98750 1.20695 1.43741 2.91626 3.27169 3.37534 3.38564 3.46681 3.96459 4.30500 4.40042 4.53184 4.72261 4.82724 4.88949 5.09471 5.17653 5.33242 5.36041 5.42191 5.56060 5.62878 5.66062 5.75357 5.93890 5.94151 6.01968 6.21223 6.25824 6.51361 6.64575 6.75048 6.83791 6.93966 7.03270 7.18665 7.19585 7.33742 7.48557 7.53006 7.66948 7.74845 7.79544 7.88028 8.30119 8.39953 8.97351 9.56172 10.98991 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.003989 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.140476 B = 7018.186843 C = 7488.068119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.085 3.915 3 C -0.151 4.151 4 O -0.303 6.303 5 C 0.214 3.786 6 N -0.466 5.466 7 C -0.008 4.008 8 C 0.067 3.933 9 N -0.475 5.475 10 C 0.374 3.626 11 N -0.698 5.698 12 C 0.163 3.837 13 H 0.080 0.920 14 C -0.116 4.116 15 C 0.016 3.984 16 C -0.488 4.488 17 C 0.077 3.923 18 N -0.887 5.887 19 Si 0.877 3.123 20 H -0.256 1.256 21 H -0.283 1.283 22 H -0.287 1.287 23 C -0.022 4.022 24 C -0.111 4.111 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.409 0.591 35 H 0.035 0.965 36 H 0.053 0.947 37 H 0.007 0.993 38 H 0.056 0.944 39 H 0.263 0.737 40 H 0.019 0.981 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 3.663 -18.915 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.028 3.972 3 C -0.208 4.208 4 O -0.209 6.209 5 C 0.021 3.979 6 N -0.195 5.195 7 C -0.165 4.165 8 C -0.091 4.091 9 N -0.200 5.200 10 C 0.129 3.871 11 N -0.329 5.329 12 C 0.060 3.940 13 H 0.098 0.902 14 C -0.155 4.155 15 C -0.022 4.022 16 C -0.507 4.507 17 C -0.126 4.126 18 N -0.525 5.525 19 Si 0.705 3.295 20 H -0.181 1.181 21 H -0.209 1.209 22 H -0.213 1.213 23 C -0.060 4.060 24 C -0.151 4.151 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.178 0.822 33 H 0.183 0.817 34 H 0.245 0.755 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.334 3.774 -18.365 19.493 hybrid contribution -1.040 -0.015 0.234 1.067 sum -6.374 3.759 -18.131 19.583 Atomic orbital electron populations 1.22209 0.95161 1.02770 1.02400 1.22254 0.94167 0.92652 0.88093 1.21904 1.02011 0.94003 1.02869 1.86250 1.81038 1.15290 1.38324 1.20140 1.01169 0.85775 0.90834 1.67734 1.16924 1.11648 1.23186 1.22845 1.04236 0.88878 1.00567 1.23243 0.96361 1.01241 0.88244 1.68190 1.19903 1.06012 1.25873 1.18642 0.93294 0.88810 0.86393 1.45236 1.69220 1.10549 1.07876 1.21067 0.95732 0.94008 0.83160 0.90202 1.21964 0.97860 0.98219 0.97433 1.19306 0.95164 0.95260 0.92447 1.20047 1.12023 1.27587 0.90998 1.24836 0.96263 0.94971 0.96520 1.69903 1.32849 1.44831 1.04880 0.86768 0.84853 0.78795 0.79035 1.18074 1.20936 1.21292 1.19917 0.96689 0.95282 0.94075 1.21916 0.96401 0.99173 0.97563 0.91978 0.91345 0.92120 0.89644 0.91833 0.90699 0.91565 0.82171 0.81738 0.75474 0.94618 0.92861 0.97482 0.92508 0.92706 0.96234 0.94186 0.93437 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.53 37.16 0.35 -1.32 16 2 C 0.08 0.94 3.12 -26.73 -0.08 0.85 16 3 C -0.15 -1.31 9.56 37.16 0.36 -0.96 16 4 O -0.30 -4.23 9.03 -18.96 -0.17 -4.40 16 5 C 0.21 3.26 7.49 -16.72 -0.13 3.13 16 6 N -0.47 -6.51 8.82 -12.97 -0.11 -6.63 16 7 C -0.01 -0.10 11.20 -17.40 -0.19 -0.30 16 8 C 0.07 0.86 11.20 -17.42 -0.20 0.67 16 9 N -0.47 -7.89 9.38 -12.10 -0.11 -8.00 16 10 C 0.37 6.25 7.49 -154.48 -1.16 5.10 16 11 N -0.70 -11.95 5.21 -53.68 -0.28 -12.23 16 12 C 0.16 3.21 2.38 -67.97 -0.16 3.05 16 13 H 0.08 1.68 7.56 -51.93 -0.39 1.29 16 14 C -0.12 -2.40 5.40 -26.63 -0.14 -2.55 16 15 C 0.02 0.40 5.93 -27.48 -0.16 0.24 16 16 C -0.49 -12.76 5.48 -98.92 -0.54 -13.30 16 17 C 0.08 2.09 5.44 -17.82 -0.10 1.99 16 18 N -0.89 -25.42 12.82 55.43 0.71 -24.71 16 19 Si 0.88 20.84 27.95 -169.99 -4.75 16.08 16 20 H -0.26 -5.85 5.58 56.52 0.32 -5.54 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.02 -0.51 5.65 -27.49 -0.16 -0.67 16 24 C -0.11 -2.35 5.52 -26.63 -0.15 -2.50 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.98 7.00 -51.93 -0.36 0.62 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.17 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.41 6.46 7.97 -40.82 -0.33 6.13 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.06 1.52 7.19 -51.93 -0.37 1.15 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.04 0.95 4.36 -51.93 -0.23 0.72 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -29.41 344.61 -8.80 -38.21 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.82 Total: 3.04 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.46 Total: -6.56 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.20 Total: -51.57 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.17 Total: -4.40 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.75 Total: 16.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.41 -8.80 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.717 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds