Wall clock time and date at job start Tue Mar 31 2020 07:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46875 * 2 1 4 4 O 1.42903 * 109.47182 * 119.99835 * 2 1 3 5 5 C 1.35751 * 116.99767 * 89.99948 * 4 2 1 6 6 N 1.32259 * 120.12207 * 0.29332 * 5 4 2 7 7 C 1.32419 * 120.02078 * 180.25311 * 6 5 4 8 8 C 1.37950 * 120.25663 * 359.74941 * 7 6 5 9 9 N 1.32391 * 120.23658 * 359.96031 * 8 7 6 10 10 C 1.32465 * 119.97843 * 0.02562 * 9 8 7 11 11 N 1.39177 * 120.12882 * 180.02562 * 10 9 8 12 12 C 1.46500 * 120.00197 * 0.02562 * 11 10 9 13 13 H 1.09003 * 109.41302 * 34.99469 * 12 11 10 14 14 C 1.52954 * 109.41368 * 154.85666 * 12 11 10 15 15 C 1.53237 * 109.40308 * 183.63117 * 14 12 11 16 16 C 1.51272 * 108.53618 * 305.37408 * 15 14 12 17 17 C 1.37879 * 120.84479 * 231.32368 * 16 15 14 18 18 N 1.31510 * 120.00107 * 348.93137 * 17 16 15 19 19 Si 1.86804 * 119.99787 * 168.92678 * 17 16 15 20 20 H 1.48504 * 109.46730 * 354.66267 * 19 17 16 21 21 H 1.48501 * 109.46848 * 114.65900 * 19 17 16 22 22 H 1.48496 * 109.47341 * 234.66424 * 19 17 16 23 23 C 1.51262 * 118.30221 * 51.34401 * 16 15 14 24 24 C 1.52962 * 109.35107 * 275.17170 * 12 11 10 25 25 H 1.09002 * 109.47167 * 299.99932 * 1 2 3 26 26 H 1.08994 * 109.47364 * 60.00476 * 1 2 3 27 27 H 1.09003 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47051 * 239.99571 * 2 1 3 29 29 H 1.09006 * 109.46707 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47336 * 299.99447 * 3 2 1 31 31 H 1.08998 * 109.47632 * 59.99926 * 3 2 1 32 32 H 1.08004 * 119.86966 * 179.72823 * 7 6 5 33 33 H 1.07998 * 119.88339 * 179.97438 * 8 7 6 34 34 H 0.96998 * 119.99785 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.48427 * 303.60750 * 14 12 11 36 36 H 1.08999 * 109.48753 * 63.64005 * 14 12 11 37 37 H 1.09000 * 109.62144 * 65.08504 * 15 14 12 38 38 H 1.08996 * 109.62873 * 185.65360 * 15 14 12 39 39 H 0.97007 * 119.99472 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.62541 * 68.36659 * 23 16 15 41 41 H 1.09002 * 109.62818 * 188.94125 * 23 16 15 42 42 H 1.08993 * 109.48441 * 296.30991 * 24 12 11 43 43 H 1.09000 * 109.48076 * 56.35267 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2118 -2.0116 1.0652 6 7 1.9779 -2.6341 -0.0780 7 6 2.1742 -3.9402 -0.1735 8 6 2.6275 -4.6564 0.9150 9 7 2.8703 -4.0426 2.0626 10 6 2.6775 -2.7364 2.1684 11 7 2.9322 -2.0879 3.3732 12 6 3.4152 -2.8499 4.5275 13 1 4.0734 -3.6484 4.1848 14 6 4.1888 -1.9197 5.4633 15 6 4.7707 -2.7339 6.6237 16 6 3.6451 -3.4934 7.2903 17 6 3.4576 -3.4260 8.6546 18 7 4.3781 -2.8798 9.4187 19 14 1.8959 -4.1104 9.4177 20 1 0.9707 -4.5492 8.3421 21 1 2.2343 -5.2690 10.2828 22 1 1.2412 -3.0571 10.2345 23 6 2.7309 -4.3290 6.4220 24 6 2.2229 -3.4570 5.2689 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.9783 -4.4468 -1.1070 33 1 2.7851 -5.7214 0.8306 34 1 2.7900 -1.1314 3.4487 35 1 4.9988 -1.4415 4.9125 36 1 3.5161 -1.1570 5.8555 37 1 5.5113 -3.4369 6.2423 38 1 5.2367 -2.0623 7.3447 39 1 4.2459 -2.8321 10.3785 40 1 3.2826 -5.1797 6.0220 41 1 1.8862 -4.6823 7.0135 42 1 1.5967 -2.6581 5.6659 43 1 1.6396 -4.0683 4.5804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:16 Heat of formation + Delta-G solvation = -19.991166 kcal Electronic energy + Delta-G solvation = -23645.089986 eV Core-core repulsion = 20303.359894 eV Total energy + Delta-G solvation = -3341.730092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.16847 -39.64891 -39.11119 -36.27699 -34.65357 -34.16003 -33.10938 -31.52760 -30.55596 -28.58569 -28.14001 -25.66519 -24.64307 -23.35679 -23.21220 -22.19256 -21.18946 -19.47235 -18.96830 -18.28743 -17.84562 -16.92200 -16.41823 -16.31843 -15.76161 -15.60393 -15.40091 -15.01863 -14.75548 -14.45410 -14.25602 -14.03136 -13.91426 -13.57304 -13.34264 -13.18548 -12.94854 -12.82805 -12.76036 -12.64856 -12.49132 -12.24383 -11.94141 -11.87219 -11.72696 -11.62536 -11.24451 -10.95706 -10.76183 -10.50516 -10.30503 -10.06000 -8.42101 -8.17085 -6.08907 0.14894 0.33068 1.38173 1.43349 1.51482 1.93363 2.22727 2.42560 2.89075 3.10790 3.30928 3.52115 3.77974 3.96295 4.05135 4.07486 4.26061 4.28576 4.42265 4.49563 4.56676 4.69883 4.72866 4.83548 4.85128 4.89418 4.93828 5.01102 5.09003 5.13772 5.21488 5.26687 5.27024 5.31990 5.42097 5.59493 5.61674 5.78258 5.81613 6.03436 6.18209 6.35034 6.36666 6.71885 6.95603 7.13835 7.48457 8.93859 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.003989 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.140476 B = 7018.186843 C = 7488.068119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 C -0.146 4.146 4 O -0.314 6.314 5 C 0.207 3.793 6 N -0.472 5.472 7 C 0.010 3.990 8 C 0.059 3.941 9 N -0.501 5.501 10 C 0.346 3.654 11 N -0.702 5.702 12 C 0.183 3.817 13 H 0.065 0.935 14 C -0.104 4.104 15 C 0.014 3.986 16 C -0.498 4.498 17 C 0.024 3.976 18 N -0.928 5.928 19 Si 0.931 3.069 20 H -0.240 1.240 21 H -0.283 1.283 22 H -0.287 1.287 23 C -0.021 4.021 24 C -0.102 4.102 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.203 0.797 33 H 0.199 0.801 34 H 0.413 0.587 35 H 0.052 0.948 36 H 0.050 0.950 37 H -0.002 1.002 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.018 0.982 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 3.304 -21.607 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 C -0.203 4.203 4 O -0.221 6.221 5 C 0.016 3.984 6 N -0.201 5.201 7 C -0.148 4.148 8 C -0.098 4.098 9 N -0.226 5.226 10 C 0.104 3.896 11 N -0.336 5.336 12 C 0.078 3.922 13 H 0.084 0.916 14 C -0.142 4.142 15 C -0.024 4.024 16 C -0.517 4.517 17 C -0.174 4.174 18 N -0.568 5.568 19 Si 0.758 3.242 20 H -0.164 1.164 21 H -0.209 1.209 22 H -0.214 1.214 23 C -0.059 4.059 24 C -0.141 4.141 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.220 0.780 33 H 0.216 0.784 34 H 0.250 0.750 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.017 0.983 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.912 3.431 -21.098 22.465 hybrid contribution -0.520 0.022 0.866 1.011 sum -7.433 3.453 -20.232 21.829 Atomic orbital electron populations 1.22176 0.94360 1.01966 1.03478 1.22523 0.94852 0.93456 0.86982 1.21916 1.01715 0.92647 1.04037 1.86240 1.81148 1.14895 1.39846 1.20106 1.01218 0.86317 0.90725 1.67871 1.17030 1.12609 1.22553 1.23593 1.01204 0.88204 1.01762 1.23868 0.95709 1.02812 0.87411 1.68147 1.20171 1.06341 1.27945 1.18708 0.95066 0.89285 0.86561 1.44823 1.70715 1.10475 1.07559 1.20566 0.94618 0.93347 0.83631 0.91642 1.21735 0.98370 0.97743 0.96396 1.19252 0.94934 0.94992 0.93270 1.20601 1.12349 1.27235 0.91509 1.25586 0.98866 0.95754 0.97238 1.70026 1.34720 1.47013 1.05046 0.85904 0.81827 0.78035 0.78470 1.16415 1.20898 1.21394 1.19896 0.96173 0.95246 0.94597 1.21775 0.96892 0.98655 0.96788 0.92241 0.88920 0.93782 0.90062 0.92309 0.88209 0.91684 0.78012 0.78432 0.74969 0.92912 0.93105 0.98341 0.95409 0.92835 0.96356 0.94135 0.93874 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.53 71.98 0.69 -2.25 16 2 C 0.08 1.59 3.12 30.59 0.10 1.68 16 3 C -0.15 -2.26 9.56 71.98 0.69 -1.57 16 4 O -0.31 -8.49 9.03 -90.77 -0.82 -9.31 16 5 C 0.21 6.05 7.49 85.05 0.64 6.68 16 6 N -0.47 -12.06 8.82 -307.76 -2.71 -14.78 16 7 C 0.01 0.20 11.20 84.54 0.95 1.15 16 8 C 0.06 1.36 11.20 84.54 0.95 2.31 16 9 N -0.50 -15.88 9.38 -192.19 -1.80 -17.68 16 10 C 0.35 11.25 7.49 133.19 1.00 12.25 16 11 N -0.70 -23.70 5.21 -323.74 -1.69 -25.39 16 12 C 0.18 7.13 2.38 44.96 0.11 7.23 16 13 H 0.07 2.75 7.56 -2.39 -0.02 2.73 16 14 C -0.10 -4.32 5.40 30.66 0.17 -4.16 16 15 C 0.01 0.69 5.93 30.11 0.18 0.87 16 16 C -0.50 -26.37 5.48 -16.17 -0.09 -26.46 16 17 C 0.02 1.32 5.44 84.66 0.46 1.78 16 18 N -0.93 -54.74 12.82 21.45 0.28 -54.46 16 19 Si 0.93 43.00 27.95 68.60 1.92 44.92 16 20 H -0.24 -10.36 5.58 99.48 0.56 -9.80 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 23 C -0.02 -0.99 5.65 30.11 0.17 -0.82 16 24 C -0.10 -4.22 5.52 30.66 0.17 -4.05 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.71 7.00 -2.39 -0.02 1.70 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.20 2.35 8.06 -2.91 -0.02 2.32 16 33 H 0.20 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.41 12.92 7.97 -92.71 -0.74 12.18 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 37 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.03 1.54 7.19 -2.39 -0.02 1.52 16 39 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.04 1.86 4.36 -2.39 -0.01 1.85 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -64.51 344.61 1.45 -63.06 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.12 Total: 19.00 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 6.16 Total: -5.35 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -5.93 Total: -112.32 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.82 Total: -9.31 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.92 Total: 44.92 kcal Total: -64.51 1.45 -63.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.068 kcal (2) G-P(sol) polarization free energy of solvation -64.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds