Wall clock time and date at job start Tue Mar 31 2020 07:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 120.00025 * 2 1 4 4 H 1.07996 * 119.99926 * 211.37962 * 3 2 1 5 5 C 1.38819 * 119.99734 * 31.36763 * 3 2 1 6 6 N 1.31613 * 119.99973 * 6.53412 * 5 3 2 7 7 Si 1.86796 * 119.99607 * 186.52317 * 5 3 2 8 8 H 1.48503 * 109.47254 * 65.00727 * 7 5 3 9 9 H 1.48497 * 109.47257 * 185.00227 * 7 5 3 10 10 H 1.48498 * 109.47616 * 305.00469 * 7 5 3 11 11 C 1.46494 * 120.00118 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47748 * 264.08950 * 11 2 1 13 13 H 1.09002 * 109.70386 * 298.89297 * 12 11 2 14 14 C 1.53189 * 109.58703 * 59.24996 * 12 11 2 15 15 C 1.53043 * 109.31509 * 174.42414 * 14 12 11 16 16 C 1.53038 * 109.52620 * 298.64314 * 15 14 12 17 17 C 1.53161 * 109.32927 * 61.36887 * 16 15 14 18 18 N 1.46922 * 109.59074 * 178.54051 * 12 11 2 19 19 C 1.34782 * 120.63144 * 6.62440 * 18 12 11 20 20 O 1.21622 * 119.99643 * 6.08252 * 19 18 12 21 21 C 1.47263 * 120.00281 * 186.08047 * 19 18 12 22 22 C 1.46681 * 126.94122 * 208.00080 * 21 19 18 23 23 C 1.34490 * 106.33138 * 180.02562 * 22 21 19 24 24 N 1.36446 * 108.85894 * 359.97438 * 23 22 21 25 25 H 0.96996 * 124.85490 * 180.02562 * 24 23 22 26 26 C 1.34665 * 110.29671 * 359.72730 * 24 23 22 27 27 H 1.08997 * 109.47136 * 274.82114 * 1 2 3 28 28 H 1.09000 * 109.47064 * 34.82274 * 1 2 3 29 29 H 1.09001 * 109.46674 * 154.82117 * 1 2 3 30 30 H 0.97006 * 119.99578 * 180.02562 * 6 5 3 31 31 H 1.09007 * 109.46978 * 144.08780 * 11 2 1 32 32 H 1.09003 * 109.47308 * 24.09293 * 11 2 1 33 33 H 1.09003 * 109.50090 * 54.47116 * 14 12 11 34 34 H 1.09008 * 109.49855 * 294.37700 * 14 12 11 35 35 H 1.08999 * 109.45756 * 58.65857 * 15 14 12 36 36 H 1.09001 * 109.45701 * 178.62889 * 15 14 12 37 37 H 1.09001 * 109.50002 * 181.31269 * 16 15 14 38 38 H 1.09009 * 109.49342 * 301.40479 * 16 15 14 39 39 H 1.09000 * 109.58989 * 185.57003 * 17 16 15 40 40 H 1.09004 * 109.70500 * 65.21021 * 17 16 15 41 41 H 1.07998 * 126.83987 * 359.96510 * 22 21 19 42 42 H 1.08004 * 125.57189 * 180.02562 * 23 22 21 43 43 H 1.07997 * 125.80484 * 180.29966 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1112 1.2543 -0.4870 5 6 1.6077 2.3002 0.6258 6 7 0.5003 2.1871 1.3279 7 14 2.4505 3.9601 0.4716 8 1 2.4105 4.4060 -0.9444 9 1 1.7477 4.9532 1.3231 10 1 3.8633 3.8411 0.9133 11 6 2.1975 -1.2687 0.0006 12 6 2.5812 -1.6355 1.4355 13 1 3.2283 -0.8634 1.8517 14 6 1.3157 -1.7603 2.2896 15 6 1.6941 -2.2619 3.6850 16 6 2.3402 -3.6448 3.5736 17 6 3.6173 -3.5415 2.7344 18 7 3.2855 -2.9249 1.4427 19 6 3.6213 -3.5305 0.2864 20 8 3.4418 -2.9606 -0.7730 21 6 4.2057 -4.8821 0.3056 22 6 5.1203 -5.4612 -0.6842 23 6 5.3913 -6.7097 -0.2637 24 7 4.7178 -6.9388 0.9006 25 1 4.7482 -7.7669 1.4048 26 6 4.0101 -5.8487 1.2533 27 1 -0.3633 0.0864 1.0240 28 1 -0.3633 0.8436 -0.5868 29 1 -0.3633 -0.9301 -0.4372 30 1 0.1214 2.9659 1.7649 31 1 3.1000 -1.1674 -0.6023 32 1 1.5668 -2.0526 -0.4186 33 1 0.6297 -2.4670 1.8225 34 1 0.8345 -0.7856 2.3715 35 1 2.3992 -1.5674 4.1417 36 1 0.7982 -2.3283 4.3023 37 1 2.5884 -4.0117 4.5696 38 1 1.6446 -4.3338 3.0945 39 1 4.0275 -4.5378 2.5692 40 1 4.3507 -2.9261 3.2554 41 1 5.4998 -4.9812 -1.5740 42 1 6.0371 -7.4152 -0.7653 43 1 3.3910 -5.7548 2.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157989184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:44 Heat of formation + Delta-G solvation = 64.284613 kcal Electronic energy + Delta-G solvation = -24464.588185 eV Core-core repulsion = 21126.512565 eV Total energy + Delta-G solvation = -3338.075620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28931 -39.53906 -36.80034 -35.31493 -32.58005 -31.97036 -30.80810 -30.14066 -28.88986 -26.58568 -25.58530 -24.34864 -22.73510 -21.85654 -20.98075 -20.19932 -20.00945 -18.95584 -17.73157 -16.62242 -15.83115 -15.46878 -14.66228 -14.59566 -14.47048 -14.21689 -13.80526 -13.50898 -13.49623 -13.08494 -12.88263 -12.84246 -12.66741 -12.45728 -12.11492 -11.85943 -11.42168 -10.88957 -10.83899 -10.75131 -10.52893 -10.46796 -10.31840 -10.10309 -9.94646 -9.74129 -9.61804 -8.86243 -8.68304 -8.37269 -8.27609 -7.93209 -6.42559 -5.56689 -3.09770 1.85880 2.46380 3.09466 3.47309 3.51305 3.52196 3.55432 3.79350 4.64304 4.80946 4.86866 5.01450 5.09985 5.11996 5.27648 5.46666 5.57109 5.64233 5.65497 5.72459 5.86879 5.92264 6.01666 6.07807 6.13911 6.19905 6.36473 6.40297 6.63163 6.72094 6.76588 6.84699 6.87883 6.96236 7.17323 7.23533 7.32767 7.50077 7.60136 7.89358 7.97827 8.02868 8.62155 8.83773 9.43339 10.06387 10.60578 11.45950 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.004623 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.736758 B = 6054.812890 C = 6651.514573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.600 5.600 3 C -0.248 4.248 4 H 0.062 0.938 5 C 0.007 3.993 6 N -0.908 5.908 7 Si 0.900 3.100 8 H -0.285 1.285 9 H -0.292 1.292 10 H -0.283 1.283 11 C 0.162 3.838 12 C 0.128 3.872 13 H 0.069 0.931 14 C -0.122 4.122 15 C -0.118 4.118 16 C -0.134 4.134 17 C 0.084 3.916 18 N -0.603 5.603 19 C 0.580 3.420 20 O -0.528 6.528 21 C -0.212 4.212 22 C -0.145 4.145 23 C -0.025 4.025 24 N -0.556 5.556 25 H 0.414 0.586 26 C 0.024 3.976 27 H 0.033 0.967 28 H 0.032 0.968 29 H -0.005 1.005 30 H 0.250 0.750 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.146 0.854 42 H 0.167 0.833 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 -20.252 5.377 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.323 5.323 3 C -0.379 4.379 4 H 0.080 0.920 5 C -0.192 4.192 6 N -0.553 5.553 7 Si 0.730 3.270 8 H -0.212 1.212 9 H -0.218 1.218 10 H -0.209 1.209 11 C 0.035 3.965 12 C 0.024 3.976 13 H 0.088 0.912 14 C -0.160 4.160 15 C -0.156 4.156 16 C -0.172 4.172 17 C -0.040 4.040 18 N -0.336 5.336 19 C 0.369 3.631 20 O -0.405 6.405 21 C -0.223 4.223 22 C -0.170 4.170 23 C -0.153 4.153 24 N -0.151 5.151 25 H 0.250 0.750 26 C -0.111 4.111 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.013 0.987 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.164 0.836 42 H 0.185 0.815 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.797 -19.905 4.918 21.601 hybrid contribution 0.384 0.590 0.562 0.901 sum 7.182 -19.315 5.481 21.324 Atomic orbital electron populations 1.20850 0.83515 0.95090 0.99139 1.44137 1.01518 1.01190 1.85482 1.19135 1.03290 0.87582 1.27863 0.92013 1.25193 0.97923 0.98727 0.97327 1.69985 1.21228 1.28647 1.35416 0.86410 0.79001 0.84157 0.77421 1.21207 1.21796 1.20934 1.21557 0.96987 0.87062 0.90856 1.22411 0.92008 0.81445 1.01760 0.91249 1.21934 0.97581 1.03008 0.93443 1.21520 1.00085 0.95554 0.98446 1.21930 0.97341 0.98738 0.99227 1.22242 0.96965 0.99814 0.84939 1.48263 1.57856 1.22786 1.04735 1.17492 0.77658 0.84160 0.83783 1.90830 1.54258 1.64545 1.30882 1.20744 1.07307 0.95539 0.98732 1.21981 1.00906 0.93916 1.00192 1.21764 1.03913 0.99104 0.90504 1.41632 1.38187 1.14147 1.21142 0.75000 1.22307 1.00831 0.87374 1.00548 0.94876 0.94873 0.98650 0.93935 0.90874 0.94013 0.93165 0.88329 0.92112 0.92436 0.91590 0.91956 0.88599 0.91938 0.83603 0.81541 0.80219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 8.19 59.85 0.49 4.62 16 2 N -0.60 -16.14 2.51 -181.12 -0.45 -16.59 16 3 C -0.25 -7.18 9.58 -15.06 -0.14 -7.33 16 4 H 0.06 1.80 7.84 -52.49 -0.41 1.39 16 5 C 0.01 0.19 5.23 -17.43 -0.09 0.10 16 6 N -0.91 -26.67 10.90 55.49 0.60 -26.07 16 7 Si 0.90 22.57 29.56 -169.99 -5.02 17.55 16 8 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 11 C 0.16 3.90 3.64 -4.05 -0.01 3.89 16 12 C 0.13 2.65 3.17 -67.61 -0.21 2.43 16 13 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 14 C -0.12 -2.33 4.66 -26.61 -0.12 -2.45 16 15 C -0.12 -1.77 5.89 -26.69 -0.16 -1.93 16 16 C -0.13 -1.56 5.94 -26.63 -0.16 -1.72 16 17 C 0.08 1.05 5.83 -3.73 -0.02 1.03 16 18 N -0.60 -10.32 2.97 -166.56 -0.50 -10.81 16 19 C 0.58 10.60 7.49 -12.59 -0.09 10.50 16 20 O -0.53 -11.73 12.63 5.26 0.07 -11.67 16 21 C -0.21 -3.04 5.85 -103.35 -0.60 -3.64 16 22 C -0.15 -1.85 11.07 -37.50 -0.42 -2.26 16 23 C -0.02 -0.22 11.89 -16.82 -0.20 -0.42 16 24 N -0.56 -4.18 5.90 -12.84 -0.08 -4.26 16 25 H 0.41 1.53 8.96 -40.82 -0.37 1.16 16 26 C 0.02 0.24 9.67 -16.84 -0.16 0.08 16 27 H 0.03 0.89 6.00 -51.93 -0.31 0.58 16 28 H 0.03 0.91 7.70 -51.93 -0.40 0.51 16 29 H -0.01 -0.12 7.79 -51.93 -0.40 -0.53 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.07 1.92 6.13 -51.92 -0.32 1.60 16 32 H 0.04 1.02 6.92 -51.93 -0.36 0.66 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.10 2.27 6.30 -51.92 -0.33 1.95 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.10 0.97 3.18 -51.93 -0.17 0.80 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.17 0.92 8.06 -52.48 -0.42 0.49 16 43 H 0.18 1.43 5.95 -52.49 -0.31 1.11 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -34.18 332.07 -8.60 -42.78 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.32 Total: 1.16 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.91 Total: 2.90 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.42 Total: -57.73 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.67 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.18 -8.60 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157989184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.063 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds