Wall clock time and date at job start Tue Mar 31 2020 07:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 120.00025 * 2 1 4 4 H 1.07996 * 119.99926 * 211.37962 * 3 2 1 5 5 C 1.38819 * 119.99734 * 31.36763 * 3 2 1 6 6 N 1.31613 * 119.99973 * 6.53412 * 5 3 2 7 7 Si 1.86796 * 119.99607 * 186.52317 * 5 3 2 8 8 H 1.48503 * 109.47254 * 65.00727 * 7 5 3 9 9 H 1.48497 * 109.47257 * 185.00227 * 7 5 3 10 10 H 1.48498 * 109.47616 * 305.00469 * 7 5 3 11 11 C 1.46494 * 120.00118 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47748 * 264.08950 * 11 2 1 13 13 H 1.09002 * 109.70386 * 298.89297 * 12 11 2 14 14 C 1.53189 * 109.58703 * 59.24996 * 12 11 2 15 15 C 1.53043 * 109.31509 * 174.42414 * 14 12 11 16 16 C 1.53038 * 109.52620 * 298.64314 * 15 14 12 17 17 C 1.53161 * 109.32927 * 61.36887 * 16 15 14 18 18 N 1.46922 * 109.59074 * 178.54051 * 12 11 2 19 19 C 1.34782 * 120.63144 * 6.62440 * 18 12 11 20 20 O 1.21622 * 119.99643 * 6.08252 * 19 18 12 21 21 C 1.47263 * 120.00281 * 186.08047 * 19 18 12 22 22 C 1.46681 * 126.94122 * 208.00080 * 21 19 18 23 23 C 1.34490 * 106.33138 * 180.02562 * 22 21 19 24 24 N 1.36446 * 108.85894 * 359.97438 * 23 22 21 25 25 H 0.96996 * 124.85490 * 180.02562 * 24 23 22 26 26 C 1.34665 * 110.29671 * 359.72730 * 24 23 22 27 27 H 1.08997 * 109.47136 * 274.82114 * 1 2 3 28 28 H 1.09000 * 109.47064 * 34.82274 * 1 2 3 29 29 H 1.09001 * 109.46674 * 154.82117 * 1 2 3 30 30 H 0.97006 * 119.99578 * 180.02562 * 6 5 3 31 31 H 1.09007 * 109.46978 * 144.08780 * 11 2 1 32 32 H 1.09003 * 109.47308 * 24.09293 * 11 2 1 33 33 H 1.09003 * 109.50090 * 54.47116 * 14 12 11 34 34 H 1.09008 * 109.49855 * 294.37700 * 14 12 11 35 35 H 1.08999 * 109.45756 * 58.65857 * 15 14 12 36 36 H 1.09001 * 109.45701 * 178.62889 * 15 14 12 37 37 H 1.09001 * 109.50002 * 181.31269 * 16 15 14 38 38 H 1.09009 * 109.49342 * 301.40479 * 16 15 14 39 39 H 1.09000 * 109.58989 * 185.57003 * 17 16 15 40 40 H 1.09004 * 109.70500 * 65.21021 * 17 16 15 41 41 H 1.07998 * 126.83987 * 359.96510 * 22 21 19 42 42 H 1.08004 * 125.57189 * 180.02562 * 23 22 21 43 43 H 1.07997 * 125.80484 * 180.29966 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1112 1.2543 -0.4870 5 6 1.6077 2.3002 0.6258 6 7 0.5003 2.1871 1.3279 7 14 2.4505 3.9601 0.4716 8 1 2.4105 4.4060 -0.9444 9 1 1.7477 4.9532 1.3231 10 1 3.8633 3.8411 0.9133 11 6 2.1975 -1.2687 0.0006 12 6 2.5812 -1.6355 1.4355 13 1 3.2283 -0.8634 1.8517 14 6 1.3157 -1.7603 2.2896 15 6 1.6941 -2.2619 3.6850 16 6 2.3402 -3.6448 3.5736 17 6 3.6173 -3.5415 2.7344 18 7 3.2855 -2.9249 1.4427 19 6 3.6213 -3.5305 0.2864 20 8 3.4418 -2.9606 -0.7730 21 6 4.2057 -4.8821 0.3056 22 6 5.1203 -5.4612 -0.6842 23 6 5.3913 -6.7097 -0.2637 24 7 4.7178 -6.9388 0.9006 25 1 4.7482 -7.7669 1.4048 26 6 4.0101 -5.8487 1.2533 27 1 -0.3633 0.0864 1.0240 28 1 -0.3633 0.8436 -0.5868 29 1 -0.3633 -0.9301 -0.4372 30 1 0.1214 2.9659 1.7649 31 1 3.1000 -1.1674 -0.6023 32 1 1.5668 -2.0526 -0.4186 33 1 0.6297 -2.4670 1.8225 34 1 0.8345 -0.7856 2.3715 35 1 2.3992 -1.5674 4.1417 36 1 0.7982 -2.3283 4.3023 37 1 2.5884 -4.0117 4.5696 38 1 1.6446 -4.3338 3.0945 39 1 4.0275 -4.5378 2.5692 40 1 4.3507 -2.9261 3.2554 41 1 5.4998 -4.9812 -1.5740 42 1 6.0371 -7.4152 -0.7653 43 1 3.3910 -5.7548 2.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157989184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:43 Heat of formation + Delta-G solvation = 41.466034 kcal Electronic energy + Delta-G solvation = -24465.577672 eV Core-core repulsion = 21126.512565 eV Total energy + Delta-G solvation = -3339.065107 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.22244 -40.85363 -38.24823 -37.26399 -34.06202 -33.64670 -32.14041 -31.50395 -29.85990 -28.36338 -27.65661 -25.85206 -24.14125 -23.24221 -22.36398 -21.49879 -21.13783 -20.03166 -18.84532 -18.69705 -17.33467 -16.99804 -16.45134 -15.97591 -15.52077 -15.46640 -15.22748 -15.18408 -14.73350 -14.49277 -14.36112 -14.32052 -13.92802 -13.81020 -13.58256 -13.26302 -12.90663 -12.77178 -12.61533 -12.54901 -12.35105 -12.15463 -11.97653 -11.78840 -11.66877 -11.50462 -11.31059 -10.67915 -10.18279 -9.72437 -9.41540 -9.16066 -8.61469 -7.79284 -5.37177 0.87709 1.44175 1.46814 1.53648 1.59986 2.09554 2.47206 2.51395 2.60680 3.31357 3.76282 3.91077 3.98375 4.01792 4.08231 4.12996 4.24077 4.41030 4.45037 4.54221 4.59060 4.65106 4.75208 4.83296 4.88721 5.03434 5.05411 5.09747 5.16884 5.18749 5.25543 5.26649 5.34735 5.40810 5.51592 5.64267 5.72524 5.76578 5.88278 6.00345 6.39389 6.69311 6.77556 7.18950 7.43157 7.89880 8.39088 9.20985 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.004623 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.736758 B = 6054.812890 C = 6651.514573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.614 5.614 3 C -0.271 4.271 4 H 0.049 0.951 5 C -0.036 4.036 6 N -0.927 5.927 7 Si 0.965 3.035 8 H -0.282 1.282 9 H -0.286 1.286 10 H -0.277 1.277 11 C 0.176 3.824 12 C 0.141 3.859 13 H 0.038 0.962 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.124 4.124 17 C 0.078 3.922 18 N -0.603 5.603 19 C 0.571 3.429 20 O -0.587 6.587 21 C -0.260 4.260 22 C -0.191 4.191 23 C 0.007 3.993 24 N -0.532 5.532 25 H 0.439 0.561 26 C 0.052 3.948 27 H 0.022 0.978 28 H 0.009 0.991 29 H 0.014 0.986 30 H 0.250 0.750 31 H 0.044 0.956 32 H 0.033 0.967 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.208 0.792 43 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.055 -23.589 7.734 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.339 5.339 3 C -0.401 4.401 4 H 0.067 0.933 5 C -0.232 4.232 6 N -0.572 5.572 7 Si 0.793 3.207 8 H -0.209 1.209 9 H -0.211 1.211 10 H -0.203 1.203 11 C 0.050 3.950 12 C 0.035 3.965 13 H 0.056 0.944 14 C -0.148 4.148 15 C -0.153 4.153 16 C -0.162 4.162 17 C -0.043 4.043 18 N -0.335 5.335 19 C 0.363 3.637 20 O -0.468 6.468 21 C -0.271 4.271 22 C -0.215 4.215 23 C -0.122 4.122 24 N -0.128 5.128 25 H 0.280 0.720 26 C -0.085 4.085 27 H 0.040 0.960 28 H 0.027 0.973 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.145 0.855 42 H 0.224 0.776 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.880 -23.322 7.325 25.684 hybrid contribution 0.107 1.521 -0.221 1.541 sum 7.987 -21.801 7.104 24.280 Atomic orbital electron populations 1.20613 0.83238 0.94911 0.98093 1.44290 1.01884 1.01686 1.86034 1.19259 1.03295 0.88965 1.28581 0.93282 1.25871 0.98547 1.01886 0.96897 1.70135 1.22035 1.29369 1.35626 0.85396 0.78168 0.79766 0.77396 1.20865 1.21125 1.20266 1.21304 0.95152 0.85670 0.92863 1.21766 0.92693 0.82945 0.99045 0.94428 1.21715 0.96095 1.00782 0.96211 1.21502 1.01006 0.97607 0.95203 1.21920 0.96338 0.96451 1.01453 1.22616 0.97977 1.01084 0.82591 1.48244 1.57244 1.21347 1.06714 1.18227 0.76826 0.85656 0.83029 1.90785 1.56730 1.66399 1.32879 1.20481 1.10171 0.94522 1.01893 1.22057 1.02805 0.96059 1.00589 1.22197 1.02324 0.97772 0.89939 1.41650 1.36262 1.14396 1.20514 0.71960 1.22473 0.99638 0.86617 0.99729 0.95976 0.97260 0.96726 0.94064 0.93757 0.94855 0.93236 0.92817 0.92916 0.90831 0.87179 0.90829 0.85346 0.91787 0.85484 0.77570 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.65 8.19 127.77 1.05 10.69 16 2 N -0.61 -35.15 2.51 -726.94 -1.82 -36.97 16 3 C -0.27 -16.49 9.58 84.03 0.80 -15.69 16 4 H 0.05 3.05 7.84 -2.91 -0.02 3.03 16 5 C -0.04 -2.11 5.23 84.86 0.44 -1.66 16 6 N -0.93 -56.16 10.90 21.65 0.24 -55.93 16 7 Si 0.97 47.56 29.56 68.60 2.03 49.59 16 8 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 11 C 0.18 9.10 3.64 86.38 0.31 9.42 16 12 C 0.14 6.16 3.17 44.97 0.14 6.30 16 13 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 14 C -0.11 -4.32 4.66 30.67 0.14 -4.17 16 15 C -0.12 -3.27 5.89 30.62 0.18 -3.09 16 16 C -0.12 -2.37 5.94 30.66 0.18 -2.19 16 17 C 0.08 1.77 5.83 86.35 0.50 2.27 16 18 N -0.60 -20.91 2.97 -799.13 -2.37 -23.28 16 19 C 0.57 21.62 7.49 86.61 0.65 22.27 16 20 O -0.59 -28.19 12.63 -4.10 -0.05 -28.24 16 21 C -0.26 -7.20 5.85 -19.04 -0.11 -7.31 16 22 C -0.19 -4.74 11.07 23.62 0.26 -4.48 16 23 C 0.01 0.09 11.89 83.12 0.99 1.08 16 24 N -0.53 -5.25 5.90 -194.54 -1.15 -6.40 16 25 H 0.44 0.43 8.96 -92.71 -0.83 -0.41 16 26 C 0.05 0.84 9.67 83.92 0.81 1.65 16 27 H 0.02 1.26 6.00 -2.39 -0.01 1.24 16 28 H 0.01 0.51 7.70 -2.39 -0.02 0.49 16 29 H 0.01 0.71 7.79 -2.39 -0.02 0.69 16 30 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 31 H 0.04 2.54 6.13 -2.38 -0.01 2.53 16 32 H 0.03 1.74 6.92 -2.39 -0.02 1.73 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 34 H 0.05 2.60 6.30 -2.38 -0.02 2.59 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.13 2.03 3.18 -2.39 -0.01 2.03 16 40 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.21 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.21 2.08 5.95 -2.91 -0.02 2.06 16 Total: -1.00 -82.56 332.07 3.42 -79.14 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.19 Total: 7.00 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.36 Total: 15.08 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -5.11 Total: -122.58 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.05 Total: -28.24 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -82.56 3.42 -79.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157989184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.607 kcal (2) G-P(sol) polarization free energy of solvation -82.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds