Wall clock time and date at job start Tue Mar 31 2020 07:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35621 * 116.99594 * 2 1 4 4 C 1.39156 * 120.50693 * 0.02562 * 3 2 1 5 5 C 1.38304 * 118.62820 * 179.72663 * 4 3 2 6 6 C 1.39937 * 119.59556 * 0.47925 * 5 4 3 7 7 N 1.38915 * 119.49596 * 179.78994 * 6 5 4 8 8 C 1.46499 * 119.99790 * 359.72718 * 7 6 5 9 9 H 1.09002 * 109.47391 * 34.99892 * 8 7 6 10 10 C 1.53002 * 109.46799 * 274.99988 * 8 7 6 11 11 C 1.52996 * 109.46972 * 300.00013 * 10 8 7 12 12 C 1.53008 * 109.47409 * 300.00085 * 11 10 8 13 13 C 1.52993 * 109.46733 * 60.00092 * 12 11 10 14 14 H 1.09000 * 109.47250 * 60.00079 * 13 12 11 15 15 N 1.46899 * 109.47003 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47473 * 300.00094 * 13 12 11 17 17 N 1.31869 * 121.00948 * 359.51011 * 6 5 4 18 18 C 1.33820 * 121.47217 * 0.25630 * 17 6 5 19 19 C 1.40911 * 119.85167 * 179.97438 * 18 17 6 20 20 H 1.07997 * 120.00407 * 180.02562 * 19 18 17 21 21 C 1.40031 * 119.99724 * 0.02562 * 19 18 17 22 22 N 1.30779 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99820 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47018 * 89.99946 * 23 21 19 25 25 H 1.48495 * 109.47030 * 209.99853 * 23 21 19 26 26 H 1.48493 * 109.47289 * 330.00020 * 23 21 19 27 27 H 1.09007 * 109.46742 * 299.99509 * 1 2 3 28 28 H 1.08991 * 109.47811 * 59.99581 * 1 2 3 29 29 H 1.08996 * 109.47141 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.68209 * 359.97438 * 4 3 2 31 31 H 1.08003 * 120.20489 * 180.26747 * 5 4 3 32 32 H 0.96998 * 119.99580 * 179.72278 * 7 6 5 33 33 H 1.08996 * 109.47407 * 60.00500 * 10 8 7 34 34 H 1.09000 * 109.46986 * 180.02562 * 10 8 7 35 35 H 1.09004 * 109.47552 * 60.00305 * 11 10 8 36 36 H 1.09001 * 109.46993 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.47021 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.46943 * 300.00592 * 12 11 10 39 39 H 1.00903 * 110.99833 * 299.99746 * 15 13 12 40 40 H 1.00896 * 111.00536 * 63.95355 * 15 13 12 41 41 H 1.09004 * 109.47368 * 300.00213 * 16 13 12 42 42 H 1.09001 * 109.47372 * 180.02562 * 16 13 12 43 43 H 0.96994 * 119.99898 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2970 2.3821 0.0005 5 6 1.9648 3.5932 0.0063 6 6 3.3641 3.6108 0.0013 7 7 4.0327 4.8285 0.0026 8 6 3.2732 6.0812 0.0033 9 1 2.3647 5.9550 0.5921 10 6 2.9021 6.4533 -1.4336 11 6 4.1774 6.6304 -2.2601 12 6 5.0306 7.7439 -1.6491 13 6 5.4017 7.3717 -0.2123 14 1 5.9668 6.4396 -0.2128 15 7 6.2204 8.4409 0.3746 16 6 4.1265 7.1945 0.6143 17 7 4.0576 2.4893 0.0007 18 6 3.4544 1.2948 -0.0001 19 6 4.2291 0.1177 -0.0012 20 1 3.7448 -0.8476 -0.0023 21 6 5.6270 0.1997 -0.0009 22 7 6.2135 1.3686 0.0000 23 14 6.6540 -1.3606 -0.0016 24 1 6.9265 -1.7732 -1.4019 25 1 7.9388 -1.1079 0.6988 26 1 5.9133 -2.4412 0.6976 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 0.2175 2.3479 0.0005 31 1 1.4098 4.5197 0.0112 32 1 5.0025 4.8491 0.0032 33 1 2.2942 5.6601 -1.8689 34 1 2.3374 7.3856 -1.4332 35 1 4.7425 5.6983 -2.2606 36 1 3.9130 6.8959 -3.2837 37 1 5.9390 7.8703 -2.2383 38 1 4.4655 8.6759 -1.6486 39 1 7.0692 8.5778 -0.1537 40 1 5.6963 9.3002 0.4456 41 1 3.5613 8.1266 0.6148 42 1 4.3909 6.9298 1.6381 43 1 7.1818 1.4253 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162394060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:29 Heat of formation + Delta-G solvation = -6.840183 kcal Electronic energy + Delta-G solvation = -23890.434990 eV Core-core repulsion = 20549.275168 eV Total energy + Delta-G solvation = -3341.159822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.42220 -38.48629 -36.61351 -34.55754 -33.35444 -32.22522 -30.27195 -29.96715 -28.02432 -27.63002 -26.30979 -24.95712 -22.54567 -21.69238 -21.27417 -20.76325 -18.93255 -17.27753 -16.76140 -16.37139 -16.01202 -15.34800 -14.92524 -14.60410 -14.56946 -14.30845 -14.12444 -13.72524 -13.23520 -13.05433 -12.85053 -12.42433 -12.33854 -12.03281 -11.88009 -11.67249 -11.45716 -11.19734 -11.14127 -11.03555 -10.66027 -10.54561 -10.49186 -10.37120 -10.29781 -9.96990 -9.73171 -9.39319 -8.68138 -8.35949 -7.94924 -7.59946 -6.32383 -6.20020 -4.30061 2.87708 3.15420 3.18870 3.20342 3.32774 4.03340 4.21994 4.47508 4.67412 4.82184 4.84938 4.89602 5.17559 5.33316 5.38189 5.54879 5.63313 5.70982 5.72010 5.84416 5.84749 5.94349 6.03117 6.05090 6.08173 6.14729 6.20964 6.26693 6.36167 6.48262 6.52948 6.57849 6.80851 6.88039 7.11218 7.26196 7.37728 7.39334 7.57506 7.76668 8.27944 8.34855 8.52270 8.77273 8.86167 9.24689 10.24834 10.41116 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.005270 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.367184 B = 5312.164767 C = 6835.194941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.313 6.313 3 C -0.079 4.079 4 C -0.114 4.114 5 C -0.348 4.348 6 C 0.396 3.604 7 N -0.729 5.729 8 C 0.168 3.832 9 H 0.076 0.924 10 C -0.134 4.134 11 C -0.113 4.113 12 C -0.148 4.148 13 C 0.089 3.911 14 H 0.085 0.915 15 N -0.845 5.845 16 C -0.115 4.115 17 N -0.514 5.514 18 C 0.290 3.710 19 C -0.414 4.414 20 H 0.090 0.910 21 C 0.068 3.932 22 N -0.713 5.713 23 Si 0.907 3.093 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.261 1.261 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.394 0.606 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.339 0.661 40 H 0.335 0.665 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 10.454 -1.978 10.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.127 4.127 4 C -0.138 4.138 5 C -0.374 4.374 6 C 0.158 3.842 7 N -0.366 5.366 8 C 0.060 3.940 9 H 0.094 0.906 10 C -0.173 4.173 11 C -0.151 4.151 12 C -0.188 4.188 13 C -0.022 4.022 14 H 0.103 0.897 15 N -0.372 5.372 16 C -0.154 4.154 17 N -0.236 5.236 18 C 0.162 3.838 19 C -0.446 4.446 20 H 0.108 0.892 21 C -0.157 4.157 22 N -0.335 5.335 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.185 1.185 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.230 0.770 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.615 10.032 -1.299 10.243 hybrid contribution -0.640 0.140 -1.042 1.231 sum -2.254 10.172 -2.341 10.678 Atomic orbital electron populations 1.22668 0.82303 1.01417 0.99588 1.85917 1.17746 1.27993 1.90958 1.20033 0.93445 0.83064 1.16147 1.20667 0.97174 0.92449 1.03553 1.20369 0.92929 0.96200 1.27894 1.18501 0.87698 0.86769 0.91211 1.44186 1.07614 1.01117 1.83687 1.20600 0.94823 0.83725 0.94864 0.90592 1.22031 0.97448 1.00922 0.96928 1.21382 0.96710 0.98949 0.98043 1.22377 0.99758 0.98999 0.97653 1.21467 0.94268 0.95416 0.91096 0.89678 1.58931 1.09366 1.10685 1.58246 1.21784 0.95325 0.98253 1.00013 1.68391 1.34731 0.94967 1.25560 1.17760 0.84973 0.91086 0.90024 1.19522 0.90514 0.93131 1.41418 0.89211 1.26069 0.98753 0.97062 0.93791 1.70167 1.10114 1.24396 1.28853 0.86342 0.79090 0.82356 0.79118 1.19540 1.20300 1.18499 0.94559 0.94571 0.90262 0.88450 0.88937 0.77010 0.91209 0.92407 0.90968 0.92790 0.92556 0.92558 0.84899 0.85310 0.91528 0.90682 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.83 101.05 0.99 1.64 16 2 O -0.31 -7.44 9.61 -18.56 -0.18 -7.62 16 3 C -0.08 -2.05 6.74 -38.10 -0.26 -2.30 16 4 C -0.11 -2.65 9.12 -39.22 -0.36 -3.01 16 5 C -0.35 -7.94 8.84 -38.92 -0.34 -8.28 16 6 C 0.40 9.51 7.63 -155.25 -1.18 8.32 16 7 N -0.73 -14.19 4.40 -53.86 -0.24 -14.42 16 8 C 0.17 2.56 2.47 -67.93 -0.17 2.39 16 9 H 0.08 1.22 6.42 -51.93 -0.33 0.88 16 10 C -0.13 -1.88 5.53 -26.73 -0.15 -2.03 16 11 C -0.11 -1.51 5.77 -26.73 -0.15 -1.66 16 12 C -0.15 -1.67 5.49 -26.73 -0.15 -1.82 16 13 C 0.09 1.09 3.08 -67.72 -0.21 0.88 16 14 H 0.09 1.24 6.51 -51.93 -0.34 0.91 16 15 N -0.84 -8.93 9.25 -4.67 -0.04 -8.97 16 16 C -0.12 -1.48 5.15 -26.73 -0.14 -1.62 16 17 N -0.51 -14.10 7.88 -10.20 -0.08 -14.18 16 18 C 0.29 8.18 6.56 -84.85 -0.56 7.62 16 19 C -0.41 -11.47 8.94 -37.90 -0.34 -11.81 16 20 H 0.09 2.43 7.31 -52.49 -0.38 2.05 16 21 C 0.07 1.77 5.50 -17.33 -0.10 1.67 16 22 N -0.71 -18.94 11.45 55.55 0.64 -18.31 16 23 Si 0.91 19.13 29.56 -169.99 -5.02 14.10 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 27 H 0.04 0.60 7.69 -51.92 -0.40 0.20 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.98 6.43 -52.49 -0.34 1.64 16 31 H 0.09 1.88 6.05 -52.48 -0.32 1.56 16 32 H 0.39 7.87 6.99 -40.82 -0.29 7.58 16 33 H 0.07 1.13 7.67 -51.93 -0.40 0.73 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.16 7.60 -51.93 -0.39 0.77 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.34 3.14 9.04 -39.29 -0.36 2.78 16 40 H 0.33 2.99 8.98 -39.29 -0.35 2.63 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -29.93 337.74 -9.33 -39.25 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -6.39 Total: 15.05 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -3.10 Total: -10.00 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.28 Total: -55.88 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.18 Total: -7.62 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.93 -9.33 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162394060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.415 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds