Wall clock time and date at job start Tue Mar 31 2020 07:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35621 * 116.99594 * 2 1 4 4 C 1.39156 * 120.50693 * 0.02562 * 3 2 1 5 5 C 1.38304 * 118.62820 * 179.72663 * 4 3 2 6 6 C 1.39937 * 119.59556 * 0.47925 * 5 4 3 7 7 N 1.38915 * 119.49596 * 179.78994 * 6 5 4 8 8 C 1.46499 * 119.99790 * 359.72718 * 7 6 5 9 9 H 1.09002 * 109.47391 * 34.99892 * 8 7 6 10 10 C 1.53002 * 109.46799 * 274.99988 * 8 7 6 11 11 C 1.52996 * 109.46972 * 300.00013 * 10 8 7 12 12 C 1.53008 * 109.47409 * 300.00085 * 11 10 8 13 13 C 1.52993 * 109.46733 * 60.00092 * 12 11 10 14 14 H 1.09000 * 109.47250 * 60.00079 * 13 12 11 15 15 N 1.46899 * 109.47003 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47473 * 300.00094 * 13 12 11 17 17 N 1.31869 * 121.00948 * 359.51011 * 6 5 4 18 18 C 1.33820 * 121.47217 * 0.25630 * 17 6 5 19 19 C 1.40911 * 119.85167 * 179.97438 * 18 17 6 20 20 H 1.07997 * 120.00407 * 180.02562 * 19 18 17 21 21 C 1.40031 * 119.99724 * 0.02562 * 19 18 17 22 22 N 1.30779 * 120.00112 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99820 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47018 * 89.99946 * 23 21 19 25 25 H 1.48495 * 109.47030 * 209.99853 * 23 21 19 26 26 H 1.48493 * 109.47289 * 330.00020 * 23 21 19 27 27 H 1.09007 * 109.46742 * 299.99509 * 1 2 3 28 28 H 1.08991 * 109.47811 * 59.99581 * 1 2 3 29 29 H 1.08996 * 109.47141 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.68209 * 359.97438 * 4 3 2 31 31 H 1.08003 * 120.20489 * 180.26747 * 5 4 3 32 32 H 0.96998 * 119.99580 * 179.72278 * 7 6 5 33 33 H 1.08996 * 109.47407 * 60.00500 * 10 8 7 34 34 H 1.09000 * 109.46986 * 180.02562 * 10 8 7 35 35 H 1.09004 * 109.47552 * 60.00305 * 11 10 8 36 36 H 1.09001 * 109.46993 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.47021 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.46943 * 300.00592 * 12 11 10 39 39 H 1.00903 * 110.99833 * 299.99746 * 15 13 12 40 40 H 1.00896 * 111.00536 * 63.95355 * 15 13 12 41 41 H 1.09004 * 109.47368 * 300.00213 * 16 13 12 42 42 H 1.09001 * 109.47372 * 180.02562 * 16 13 12 43 43 H 0.96994 * 119.99898 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2970 2.3821 0.0005 5 6 1.9648 3.5932 0.0063 6 6 3.3641 3.6108 0.0013 7 7 4.0327 4.8285 0.0026 8 6 3.2732 6.0812 0.0033 9 1 2.3647 5.9550 0.5921 10 6 2.9021 6.4533 -1.4336 11 6 4.1774 6.6304 -2.2601 12 6 5.0306 7.7439 -1.6491 13 6 5.4017 7.3717 -0.2123 14 1 5.9668 6.4396 -0.2128 15 7 6.2204 8.4409 0.3746 16 6 4.1265 7.1945 0.6143 17 7 4.0576 2.4893 0.0007 18 6 3.4544 1.2948 -0.0001 19 6 4.2291 0.1177 -0.0012 20 1 3.7448 -0.8476 -0.0023 21 6 5.6270 0.1997 -0.0009 22 7 6.2135 1.3686 0.0000 23 14 6.6540 -1.3606 -0.0016 24 1 6.9265 -1.7732 -1.4019 25 1 7.9388 -1.1079 0.6988 26 1 5.9133 -2.4412 0.6976 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 0.2175 2.3479 0.0005 31 1 1.4098 4.5197 0.0112 32 1 5.0025 4.8491 0.0032 33 1 2.2942 5.6601 -1.8689 34 1 2.3374 7.3856 -1.4332 35 1 4.7425 5.6983 -2.2606 36 1 3.9130 6.8959 -3.2837 37 1 5.9390 7.8703 -2.2383 38 1 4.4655 8.6759 -1.6486 39 1 7.0692 8.5778 -0.1537 40 1 5.6963 9.3002 0.4456 41 1 3.5613 8.1266 0.6148 42 1 4.3909 6.9298 1.6381 43 1 7.1818 1.4253 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162394060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:28 Heat of formation + Delta-G solvation = -27.095828 kcal Electronic energy + Delta-G solvation = -23891.313340 eV Core-core repulsion = 20549.275168 eV Total energy + Delta-G solvation = -3342.038173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87269 -40.03567 -38.30471 -36.07772 -34.97964 -33.50575 -32.14578 -31.41245 -29.52291 -28.74698 -27.95629 -26.75127 -23.88259 -22.99835 -22.80698 -22.33747 -20.27007 -19.10655 -18.43931 -18.07620 -17.09652 -16.78938 -16.54442 -16.20560 -16.12195 -15.54391 -15.43434 -14.89499 -14.71832 -14.46255 -14.35677 -14.06342 -13.81238 -13.31166 -13.23198 -13.00716 -12.89687 -12.86318 -12.80848 -12.41991 -12.19439 -12.05955 -12.00025 -11.63805 -11.55364 -11.49020 -11.28582 -11.04917 -10.06593 -9.86829 -9.53102 -9.51889 -8.23064 -8.00046 -6.29516 1.02728 1.31927 1.41616 1.54819 1.58871 2.27111 2.68660 2.93946 3.07771 3.54007 3.77356 3.83360 4.02221 4.15176 4.25865 4.28178 4.30324 4.46417 4.49408 4.52447 4.58442 4.59860 4.71924 4.73574 4.75913 4.82492 4.95764 4.99456 5.06894 5.14214 5.20375 5.31809 5.35455 5.43455 5.45907 5.56894 5.79330 5.92838 6.27401 6.29298 6.46195 6.67039 6.80463 6.89543 7.06021 7.38492 8.34704 8.51673 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.005270 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.367184 B = 5312.164767 C = 6835.194941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.339 6.339 3 C -0.103 4.103 4 C -0.113 4.113 5 C -0.342 4.342 6 C 0.379 3.621 7 N -0.722 5.722 8 C 0.163 3.837 9 H 0.072 0.928 10 C -0.127 4.127 11 C -0.111 4.111 12 C -0.137 4.137 13 C 0.094 3.906 14 H 0.053 0.947 15 N -0.848 5.848 16 C -0.106 4.106 17 N -0.545 5.545 18 C 0.254 3.746 19 C -0.453 4.453 20 H 0.082 0.918 21 C 0.025 3.975 22 N -0.748 5.748 23 Si 0.984 3.016 24 H -0.263 1.263 25 H -0.266 1.266 26 H -0.260 1.260 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.389 0.611 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.035 0.965 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.347 0.653 40 H 0.348 0.652 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 12.245 -2.169 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.253 6.253 3 C -0.150 4.150 4 C -0.137 4.137 5 C -0.368 4.368 6 C 0.140 3.860 7 N -0.358 5.358 8 C 0.056 3.944 9 H 0.090 0.910 10 C -0.166 4.166 11 C -0.150 4.150 12 C -0.176 4.176 13 C -0.018 4.018 14 H 0.071 0.929 15 N -0.378 5.378 16 C -0.144 4.144 17 N -0.269 5.269 18 C 0.125 3.875 19 C -0.485 4.485 20 H 0.100 0.900 21 C -0.196 4.196 22 N -0.370 5.370 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.191 1.191 26 H -0.184 1.184 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.224 0.776 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.432 11.882 -1.491 12.220 hybrid contribution -0.536 -0.283 -0.983 1.155 sum -2.968 11.599 -2.474 12.226 Atomic orbital electron populations 1.23004 0.79207 1.03914 1.00497 1.85849 1.20980 1.27411 1.91108 1.20077 0.93234 0.84531 1.17205 1.21038 0.98781 0.91741 1.02155 1.20720 0.92702 0.97329 1.26046 1.18926 0.88707 0.87392 0.90960 1.44376 1.07569 1.01207 1.82636 1.20884 0.94714 0.82647 0.96113 0.90960 1.21961 0.97624 1.01544 0.95480 1.21345 0.96404 0.98216 0.99000 1.22287 0.99941 0.98873 0.96541 1.21273 0.93762 0.94834 0.91908 0.92858 1.58841 1.09686 1.10941 1.58311 1.21701 0.95555 0.98358 0.98803 1.68333 1.36157 0.95799 1.26563 1.18198 0.86727 0.91689 0.90903 1.19706 0.91908 0.92946 1.43960 0.90022 1.26909 0.99249 1.00613 0.92836 1.70252 1.10659 1.26505 1.29633 0.85197 0.77313 0.77736 0.79348 1.18818 1.19063 1.18362 0.93508 0.93501 0.87162 0.85245 0.86141 0.77632 0.93735 0.89056 0.94622 0.91591 0.91865 0.90094 0.83939 0.83789 0.88397 0.92279 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 9.83 113.37 1.11 2.10 16 2 O -0.34 -16.39 9.61 -89.34 -0.86 -17.25 16 3 C -0.10 -5.44 6.74 23.23 0.16 -5.28 16 4 C -0.11 -5.21 9.12 22.51 0.21 -5.01 16 5 C -0.34 -15.52 8.84 22.70 0.20 -15.32 16 6 C 0.38 18.68 7.63 133.45 1.02 19.70 16 7 N -0.72 -28.76 4.40 -324.31 -1.43 -30.18 16 8 C 0.16 4.78 2.47 44.99 0.11 4.89 16 9 H 0.07 2.19 6.42 -2.39 -0.02 2.17 16 10 C -0.13 -3.33 5.53 30.59 0.17 -3.16 16 11 C -0.11 -2.85 5.77 30.60 0.18 -2.67 16 12 C -0.14 -2.74 5.49 30.59 0.17 -2.57 16 13 C 0.09 2.16 3.08 44.91 0.14 2.30 16 14 H 0.05 1.58 6.51 -2.39 -0.02 1.57 16 15 N -0.85 -16.06 9.25 -168.69 -1.56 -17.62 16 16 C -0.11 -2.51 5.15 30.59 0.16 -2.36 16 17 N -0.55 -31.30 7.88 -186.17 -1.47 -32.77 16 18 C 0.25 14.97 6.56 40.23 0.26 15.24 16 19 C -0.45 -26.40 8.94 23.36 0.21 -26.19 16 20 H 0.08 4.68 7.31 -2.91 -0.02 4.66 16 21 C 0.03 1.37 5.50 85.28 0.47 1.84 16 22 N -0.75 -41.45 11.45 21.84 0.25 -41.20 16 23 Si 0.98 40.46 29.56 68.60 2.03 42.48 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 27 H 0.05 1.47 7.69 -2.38 -0.02 1.45 16 28 H 0.05 1.47 7.69 -2.39 -0.02 1.45 16 29 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.13 5.01 6.43 -2.91 -0.02 4.99 16 31 H 0.12 4.69 6.05 -2.91 -0.02 4.67 16 32 H 0.39 16.27 6.99 -92.71 -0.65 15.62 16 33 H 0.04 1.39 7.67 -2.39 -0.02 1.37 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.03 1.17 7.60 -2.39 -0.02 1.15 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.35 5.72 9.04 -89.69 -0.81 4.91 16 40 H 0.35 5.06 8.98 -89.70 -0.81 4.26 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.28 13.83 8.29 -92.71 -0.77 13.06 16 Total: -1.00 -69.09 337.74 0.31 -68.78 By element: Atomic # 1 Polarization: 45.46 SS G_CDS: -1.21 Total: 44.25 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.56 Total: -16.49 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -4.20 Total: -121.77 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.86 Total: -17.25 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -69.09 0.31 -68.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162394060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.681 kcal (2) G-P(sol) polarization free energy of solvation -69.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds