Wall clock time and date at job start Tue Mar 31 2020 07:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35619 * 116.99961 * 2 1 4 4 C 1.39158 * 120.49863 * 0.02562 * 3 2 1 5 5 C 1.38308 * 118.62323 * 179.97438 * 4 3 2 6 6 C 1.39942 * 119.59758 * 359.97438 * 5 4 3 7 7 N 1.38909 * 119.49595 * 179.97438 * 6 5 4 8 8 C 1.46493 * 120.00091 * 359.97438 * 7 6 5 9 9 H 1.08996 * 109.47262 * 325.00221 * 8 7 6 10 10 C 1.53005 * 109.46939 * 84.99804 * 8 7 6 11 11 C 1.52998 * 109.47028 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47517 * 299.99972 * 11 10 8 13 13 C 1.53002 * 109.46595 * 59.99982 * 12 11 10 14 14 H 1.08996 * 109.46982 * 60.00126 * 13 12 11 15 15 N 1.46903 * 109.46878 * 179.97438 * 13 12 11 16 16 C 1.52993 * 109.47429 * 204.99667 * 8 7 6 17 17 N 1.31869 * 121.00605 * 0.25645 * 6 5 4 18 18 C 1.33827 * 121.47280 * 359.48145 * 17 6 5 19 19 C 1.40911 * 119.84594 * 180.24240 * 18 17 6 20 20 H 1.08000 * 119.99453 * 173.96225 * 19 18 17 21 21 C 1.40021 * 120.00258 * 353.96307 * 19 18 17 22 22 N 1.30776 * 120.00137 * 6.34766 * 21 19 18 23 23 Si 1.86805 * 119.99789 * 186.34476 * 21 19 18 24 24 H 1.48494 * 109.46990 * 94.98790 * 23 21 19 25 25 H 1.48506 * 109.47095 * 214.98665 * 23 21 19 26 26 H 1.48496 * 109.47137 * 334.98240 * 23 21 19 27 27 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47275 * 299.99536 * 1 2 3 29 29 H 1.09002 * 109.47031 * 60.00179 * 1 2 3 30 30 H 1.07994 * 120.69126 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.20312 * 179.97438 * 5 4 3 32 32 H 0.97000 * 119.99458 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47266 * 300.00346 * 10 8 7 34 34 H 1.09005 * 109.46887 * 59.99969 * 10 8 7 35 35 H 1.08996 * 109.47083 * 60.00472 * 11 10 8 36 36 H 1.09008 * 109.47011 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.46680 * 300.00340 * 12 11 10 38 38 H 1.08995 * 109.47006 * 180.02562 * 12 11 10 39 39 H 1.00896 * 110.99846 * 300.00225 * 15 13 12 40 40 H 1.00906 * 110.99756 * 63.95530 * 15 13 12 41 41 H 1.09005 * 109.47172 * 300.00506 * 16 8 7 42 42 H 1.09007 * 109.47175 * 59.99890 * 16 8 7 43 43 H 0.97003 * 119.99897 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2969 2.3820 0.0005 5 6 1.9648 3.5931 0.0011 6 6 3.3642 3.6108 0.0016 7 7 4.0328 4.8284 0.0016 8 6 3.2734 6.0811 0.0004 9 1 2.3656 5.9551 -0.5896 10 6 2.9003 6.4526 1.4371 11 6 2.1077 7.7612 1.4360 12 6 2.9622 8.8747 0.8268 13 6 3.3352 8.5031 -0.6098 14 1 2.4275 8.3775 -1.1999 15 7 4.1551 9.5723 -1.1950 16 6 4.1273 7.1947 -0.6089 17 7 4.0576 2.4892 -0.0035 18 6 3.4543 1.2946 0.0010 19 6 4.2291 0.1177 0.0006 20 1 3.7494 -0.8446 0.1026 21 6 5.6208 0.1956 -0.1321 22 7 6.2136 1.3614 -0.1308 23 14 6.6309 -1.3656 -0.3110 24 1 6.8641 -1.6419 -1.7513 25 1 7.9354 -1.1928 0.3774 26 1 5.8963 -2.5030 0.2988 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2176 2.3479 0.0014 31 1 1.4099 4.5196 0.0011 32 1 5.0026 4.8490 0.0015 33 1 2.2919 5.6592 1.8713 34 1 3.8081 6.5785 2.0272 35 1 1.2000 7.6357 0.8458 36 1 1.8423 8.0262 2.4595 37 1 3.8700 9.0001 1.4170 38 1 2.3977 9.8070 0.8265 39 1 3.6531 10.4474 -1.2070 40 1 5.0320 9.6652 -0.7043 41 1 5.0351 7.3206 -0.0188 42 1 4.3931 6.9300 -1.6324 43 1 7.1777 1.4154 -0.2231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162394063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:33 Heat of formation + Delta-G solvation = -10.534449 kcal Electronic energy + Delta-G solvation = -23535.958752 eV Core-core repulsion = 20194.638735 eV Total energy + Delta-G solvation = -3341.320017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.28368 -38.50978 -36.71863 -34.75658 -33.39122 -32.52426 -30.25636 -29.92341 -28.13744 -27.43551 -26.30458 -24.97873 -22.47227 -21.77779 -21.37859 -20.14305 -19.81751 -17.38948 -16.66644 -16.41179 -15.87806 -15.52459 -14.95302 -14.59893 -14.57422 -14.35996 -14.14769 -13.78351 -13.42978 -13.09652 -12.72316 -12.55484 -12.38574 -12.31001 -12.01071 -11.55439 -11.25149 -11.17468 -11.13667 -11.04012 -10.76653 -10.62512 -10.54047 -10.37837 -10.34795 -10.19952 -9.74174 -9.38241 -8.79471 -8.38154 -7.96002 -7.61045 -6.34217 -6.21756 -4.30700 2.86611 3.15197 3.18063 3.20356 3.31797 4.02614 4.06168 4.44007 4.65117 4.71376 4.85522 4.89679 5.11800 5.21880 5.26046 5.48885 5.53244 5.55923 5.68137 5.83816 5.84048 5.91480 5.99166 6.01776 6.03581 6.07828 6.14823 6.16740 6.30510 6.39803 6.47684 6.60351 6.80226 6.86650 6.99890 7.25369 7.28629 7.36976 7.56184 7.75516 8.27132 8.34040 8.50834 8.76093 8.85315 9.23516 10.23480 10.40199 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.004414 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.123268 B = 6342.359403 C = 7674.429362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.312 6.312 3 C -0.078 4.078 4 C -0.114 4.114 5 C -0.347 4.347 6 C 0.396 3.604 7 N -0.733 5.733 8 C 0.171 3.829 9 H 0.074 0.926 10 C -0.136 4.136 11 C -0.113 4.113 12 C -0.152 4.152 13 C 0.095 3.905 14 H 0.081 0.919 15 N -0.845 5.845 16 C -0.117 4.117 17 N -0.514 5.514 18 C 0.290 3.710 19 C -0.414 4.414 20 H 0.090 0.910 21 C 0.069 3.931 22 N -0.714 5.714 23 Si 0.907 3.093 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.261 1.261 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.394 0.606 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.338 0.662 40 H 0.339 0.661 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 11.522 1.291 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.126 4.126 4 C -0.139 4.139 5 C -0.373 4.373 6 C 0.158 3.842 7 N -0.368 5.368 8 C 0.063 3.937 9 H 0.092 0.908 10 C -0.175 4.175 11 C -0.152 4.152 12 C -0.192 4.192 13 C -0.017 4.017 14 H 0.099 0.901 15 N -0.373 5.373 16 C -0.155 4.155 17 N -0.237 5.237 18 C 0.161 3.839 19 C -0.447 4.447 20 H 0.109 0.891 21 C -0.156 4.156 22 N -0.336 5.336 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.184 1.184 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.229 0.771 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.543 11.112 0.584 11.677 hybrid contribution -0.559 0.112 0.946 1.105 sum -4.102 11.224 1.531 12.048 Atomic orbital electron populations 1.22675 0.82281 1.01440 0.99602 1.85918 1.17761 1.27960 1.90939 1.20029 0.93434 0.83079 1.16024 1.20672 0.97204 0.92423 1.03558 1.20377 0.92890 0.96245 1.27781 1.18482 0.87711 0.86685 0.91321 1.44108 1.07672 1.01245 1.83824 1.20542 0.94937 0.83407 0.94825 0.90774 1.22095 1.00308 0.96708 0.98375 1.21430 0.98477 0.94762 1.00484 1.22422 1.00286 0.98555 0.97893 1.21389 0.96400 0.91360 0.92552 0.90074 1.58908 1.08148 1.09486 1.60762 1.21760 0.98442 0.93264 1.02068 1.68386 1.34798 0.94987 1.25512 1.17763 0.85009 0.91060 0.90043 1.19528 0.90923 0.93267 1.40959 0.89148 1.26068 0.98625 0.97099 0.93842 1.70172 1.10010 1.24614 1.28836 0.86320 0.79043 0.82365 0.79129 1.19564 1.20297 1.18444 0.90239 0.94560 0.94537 0.88388 0.88891 0.77108 0.91134 0.92163 0.91901 0.92201 0.92120 0.92427 0.84925 0.84901 0.91895 0.90646 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.83 101.05 0.99 1.64 16 2 O -0.31 -7.43 9.62 -18.55 -0.18 -7.61 16 3 C -0.08 -2.02 6.74 -38.11 -0.26 -2.28 16 4 C -0.11 -2.67 9.12 -39.21 -0.36 -3.02 16 5 C -0.35 -7.98 8.83 -38.92 -0.34 -8.32 16 6 C 0.40 9.62 7.63 -155.26 -1.18 8.44 16 7 N -0.73 -14.59 5.24 -53.87 -0.28 -14.87 16 8 C 0.17 2.64 2.14 -67.93 -0.15 2.50 16 9 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 10 C -0.14 -1.92 5.41 -26.73 -0.14 -2.06 16 11 C -0.11 -1.24 5.92 -26.73 -0.16 -1.40 16 12 C -0.15 -1.46 5.49 -26.73 -0.15 -1.61 16 13 C 0.09 1.01 3.24 -67.74 -0.22 0.79 16 14 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 15 N -0.85 -7.97 9.25 -4.69 -0.04 -8.01 16 16 C -0.12 -1.51 4.93 -26.76 -0.13 -1.65 16 17 N -0.51 -14.23 7.90 -10.20 -0.08 -14.31 16 18 C 0.29 8.21 6.55 -84.85 -0.56 7.65 16 19 C -0.41 -11.53 8.92 -37.90 -0.34 -11.87 16 20 H 0.09 2.45 7.33 -52.49 -0.38 2.07 16 21 C 0.07 1.78 5.49 -17.33 -0.10 1.69 16 22 N -0.71 -19.07 11.48 55.55 0.64 -18.43 16 23 Si 0.91 19.15 29.57 -169.99 -5.03 14.12 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 26 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.04 0.60 7.69 -51.93 -0.40 0.21 16 30 H 0.10 2.00 6.43 -52.49 -0.34 1.66 16 31 H 0.09 1.91 6.03 -52.49 -0.32 1.59 16 32 H 0.39 7.94 8.72 -40.82 -0.36 7.58 16 33 H 0.07 1.15 7.64 -51.93 -0.40 0.76 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.34 2.57 9.04 -39.29 -0.36 2.21 16 40 H 0.34 2.89 8.98 -39.29 -0.35 2.54 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.27 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -30.33 342.18 -9.47 -39.80 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.57 Total: 13.68 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.08 Total: -9.52 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.23 Total: -55.63 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.18 Total: -7.61 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.33 -9.47 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162394063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.269 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds