Wall clock time and date at job start Tue Mar 31 2020 07:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35619 * 116.99961 * 2 1 4 4 C 1.39158 * 120.49863 * 0.02562 * 3 2 1 5 5 C 1.38308 * 118.62323 * 179.97438 * 4 3 2 6 6 C 1.39942 * 119.59758 * 359.97438 * 5 4 3 7 7 N 1.38909 * 119.49595 * 179.97438 * 6 5 4 8 8 C 1.46493 * 120.00091 * 359.97438 * 7 6 5 9 9 H 1.08996 * 109.47262 * 325.00221 * 8 7 6 10 10 C 1.53005 * 109.46939 * 84.99804 * 8 7 6 11 11 C 1.52998 * 109.47028 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47517 * 299.99972 * 11 10 8 13 13 C 1.53002 * 109.46595 * 59.99982 * 12 11 10 14 14 H 1.08996 * 109.46982 * 60.00126 * 13 12 11 15 15 N 1.46903 * 109.46878 * 179.97438 * 13 12 11 16 16 C 1.52993 * 109.47429 * 204.99667 * 8 7 6 17 17 N 1.31869 * 121.00605 * 0.25645 * 6 5 4 18 18 C 1.33827 * 121.47280 * 359.48145 * 17 6 5 19 19 C 1.40911 * 119.84594 * 180.24240 * 18 17 6 20 20 H 1.08000 * 119.99453 * 173.96225 * 19 18 17 21 21 C 1.40021 * 120.00258 * 353.96307 * 19 18 17 22 22 N 1.30776 * 120.00137 * 6.34766 * 21 19 18 23 23 Si 1.86805 * 119.99789 * 186.34476 * 21 19 18 24 24 H 1.48494 * 109.46990 * 94.98790 * 23 21 19 25 25 H 1.48506 * 109.47095 * 214.98665 * 23 21 19 26 26 H 1.48496 * 109.47137 * 334.98240 * 23 21 19 27 27 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47275 * 299.99536 * 1 2 3 29 29 H 1.09002 * 109.47031 * 60.00179 * 1 2 3 30 30 H 1.07994 * 120.69126 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.20312 * 179.97438 * 5 4 3 32 32 H 0.97000 * 119.99458 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47266 * 300.00346 * 10 8 7 34 34 H 1.09005 * 109.46887 * 59.99969 * 10 8 7 35 35 H 1.08996 * 109.47083 * 60.00472 * 11 10 8 36 36 H 1.09008 * 109.47011 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.46680 * 300.00340 * 12 11 10 38 38 H 1.08995 * 109.47006 * 180.02562 * 12 11 10 39 39 H 1.00896 * 110.99846 * 300.00225 * 15 13 12 40 40 H 1.00906 * 110.99756 * 63.95530 * 15 13 12 41 41 H 1.09005 * 109.47172 * 300.00506 * 16 8 7 42 42 H 1.09007 * 109.47175 * 59.99890 * 16 8 7 43 43 H 0.97003 * 119.99897 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2969 2.3820 0.0005 5 6 1.9648 3.5931 0.0011 6 6 3.3642 3.6108 0.0016 7 7 4.0328 4.8284 0.0016 8 6 3.2734 6.0811 0.0004 9 1 2.3656 5.9551 -0.5896 10 6 2.9003 6.4526 1.4371 11 6 2.1077 7.7612 1.4360 12 6 2.9622 8.8747 0.8268 13 6 3.3352 8.5031 -0.6098 14 1 2.4275 8.3775 -1.1999 15 7 4.1551 9.5723 -1.1950 16 6 4.1273 7.1947 -0.6089 17 7 4.0576 2.4892 -0.0035 18 6 3.4543 1.2946 0.0010 19 6 4.2291 0.1177 0.0006 20 1 3.7494 -0.8446 0.1026 21 6 5.6208 0.1956 -0.1321 22 7 6.2136 1.3614 -0.1308 23 14 6.6309 -1.3656 -0.3110 24 1 6.8641 -1.6419 -1.7513 25 1 7.9354 -1.1928 0.3774 26 1 5.8963 -2.5030 0.2988 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2176 2.3479 0.0014 31 1 1.4099 4.5196 0.0011 32 1 5.0026 4.8490 0.0015 33 1 2.2919 5.6592 1.8713 34 1 3.8081 6.5785 2.0272 35 1 1.2000 7.6357 0.8458 36 1 1.8423 8.0262 2.4595 37 1 3.8700 9.0001 1.4170 38 1 2.3977 9.8070 0.8265 39 1 3.6531 10.4474 -1.2070 40 1 5.0320 9.6652 -0.7043 41 1 5.0351 7.3206 -0.0188 42 1 4.3931 6.9300 -1.6324 43 1 7.1777 1.4154 -0.2231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162394063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:32 Heat of formation + Delta-G solvation = -31.346125 kcal Electronic energy + Delta-G solvation = -23536.861214 eV Core-core repulsion = 20194.638735 eV Total energy + Delta-G solvation = -3342.222479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79294 -39.94773 -38.38870 -36.26945 -35.05705 -33.68925 -32.15874 -31.38608 -29.52153 -28.56962 -27.95293 -26.77839 -23.83075 -23.07692 -22.89396 -21.71582 -20.91722 -19.28794 -18.36020 -18.09376 -17.04185 -16.80992 -16.49113 -16.21176 -16.16994 -15.62063 -15.31667 -14.94970 -14.69622 -14.53461 -14.31243 -14.02559 -13.97292 -13.47709 -13.30568 -13.23500 -12.91916 -12.85770 -12.47927 -12.27331 -12.11124 -12.08054 -11.98907 -11.63887 -11.61207 -11.51154 -11.38617 -11.20307 -10.09238 -9.89090 -9.55141 -9.53828 -8.25580 -8.04198 -6.30924 1.00621 1.29452 1.41896 1.56180 1.57731 2.27055 2.59161 2.91966 3.05311 3.54731 3.75502 3.94364 3.99274 4.14628 4.20557 4.25216 4.29325 4.41629 4.48442 4.50460 4.52356 4.55084 4.65916 4.70250 4.75792 4.86978 4.93994 5.00700 5.11120 5.13578 5.17416 5.26332 5.33254 5.38978 5.48432 5.54309 5.76049 5.90110 6.26720 6.28307 6.44304 6.65308 6.77401 6.86838 7.03435 7.36145 8.31778 8.50358 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.004414 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.123268 B = 6342.359403 C = 7674.429362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.338 6.338 3 C -0.100 4.100 4 C -0.113 4.113 5 C -0.341 4.341 6 C 0.378 3.622 7 N -0.729 5.729 8 C 0.169 3.831 9 H 0.067 0.933 10 C -0.128 4.128 11 C -0.107 4.107 12 C -0.144 4.144 13 C 0.102 3.898 14 H 0.078 0.922 15 N -0.851 5.851 16 C -0.108 4.108 17 N -0.545 5.545 18 C 0.253 3.747 19 C -0.453 4.453 20 H 0.083 0.917 21 C 0.026 3.974 22 N -0.749 5.749 23 Si 0.985 3.015 24 H -0.265 1.265 25 H -0.265 1.265 26 H -0.259 1.259 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.390 0.610 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.352 0.648 40 H 0.345 0.655 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 12.974 1.387 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.148 4.148 4 C -0.137 4.137 5 C -0.367 4.367 6 C 0.139 3.861 7 N -0.364 5.364 8 C 0.063 3.937 9 H 0.085 0.915 10 C -0.167 4.167 11 C -0.146 4.146 12 C -0.183 4.183 13 C -0.010 4.010 14 H 0.097 0.903 15 N -0.381 5.381 16 C -0.146 4.146 17 N -0.268 5.268 18 C 0.124 3.876 19 C -0.486 4.486 20 H 0.101 0.899 21 C -0.195 4.195 22 N -0.372 5.372 23 Si 0.805 3.195 24 H -0.190 1.190 25 H -0.190 1.190 26 H -0.182 1.182 27 H 0.129 0.871 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.224 0.776 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.438 12.626 0.684 13.400 hybrid contribution -0.426 -0.227 0.916 1.035 sum -4.864 12.399 1.599 13.414 Atomic orbital electron populations 1.23018 0.79158 1.03970 1.00531 1.85852 1.21015 1.27322 1.91060 1.20070 0.93210 0.84549 1.16926 1.21041 0.98838 0.91674 1.02159 1.20713 0.92660 0.97352 1.26019 1.18897 0.88725 0.87278 0.91164 1.44326 1.07711 1.01412 1.82927 1.20774 0.94637 0.82301 0.95991 0.91497 1.21986 1.00184 0.97839 0.96740 1.21403 0.98298 0.93252 1.01647 1.22357 1.00429 0.98799 0.96704 1.21244 0.95860 0.90369 0.93504 0.90344 1.58837 1.08493 1.09901 1.60820 1.21656 0.98524 0.93731 1.00717 1.68328 1.36189 0.95796 1.26525 1.18207 0.86781 0.91651 0.90959 1.19721 0.92342 0.93082 1.43416 0.89913 1.26918 0.99057 1.00684 0.92888 1.70249 1.10632 1.26765 1.29562 0.85167 0.77378 0.77705 0.79242 1.18963 1.18962 1.18234 0.87102 0.93464 0.93479 0.85128 0.86289 0.77588 0.93624 0.92566 0.91414 0.90903 0.91824 0.90148 0.83398 0.84208 0.91562 0.92316 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.83 113.37 1.11 2.08 16 2 O -0.34 -16.29 9.62 -89.30 -0.86 -17.15 16 3 C -0.10 -5.28 6.74 23.23 0.16 -5.12 16 4 C -0.11 -5.22 9.12 22.51 0.21 -5.02 16 5 C -0.34 -15.66 8.83 22.70 0.20 -15.46 16 6 C 0.38 18.82 7.63 133.45 1.02 19.84 16 7 N -0.73 -29.66 5.24 -324.34 -1.70 -31.36 16 8 C 0.17 5.16 2.14 44.99 0.10 5.25 16 9 H 0.07 2.15 6.43 -2.39 -0.02 2.13 16 10 C -0.13 -3.51 5.41 30.60 0.17 -3.34 16 11 C -0.11 -2.09 5.92 30.59 0.18 -1.91 16 12 C -0.14 -2.31 5.49 30.60 0.17 -2.14 16 13 C 0.10 1.94 3.24 44.90 0.15 2.09 16 14 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 15 N -0.85 -13.94 9.25 -168.75 -1.56 -15.50 16 16 C -0.11 -2.69 4.93 30.57 0.15 -2.54 16 17 N -0.54 -31.41 7.90 -186.18 -1.47 -32.88 16 18 C 0.25 14.93 6.55 40.23 0.26 15.19 16 19 C -0.45 -26.38 8.92 23.36 0.21 -26.18 16 20 H 0.08 4.73 7.33 -2.91 -0.02 4.71 16 21 C 0.03 1.40 5.49 85.28 0.47 1.86 16 22 N -0.75 -41.44 11.48 21.84 0.25 -41.19 16 23 Si 0.98 40.25 29.57 68.60 2.03 42.28 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 27 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.05 1.48 7.69 -2.39 -0.02 1.46 16 29 H 0.05 1.47 7.69 -2.39 -0.02 1.46 16 30 H 0.13 5.05 6.43 -2.91 -0.02 5.04 16 31 H 0.12 4.73 6.03 -2.91 -0.02 4.71 16 32 H 0.39 16.27 8.72 -92.71 -0.81 15.46 16 33 H 0.04 1.47 7.64 -2.39 -0.02 1.45 16 34 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.35 4.28 9.04 -89.70 -0.81 3.47 16 40 H 0.34 5.05 8.98 -89.69 -0.81 4.25 16 41 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.28 13.79 8.30 -92.71 -0.77 13.02 16 Total: -1.00 -68.96 342.18 -0.15 -69.10 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: -1.38 Total: 42.08 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.54 Total: -15.39 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -4.48 Total: -120.93 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.86 Total: -17.15 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -68.96 -0.15 -69.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162394063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.757 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds