Wall clock time and date at job start Tue Mar 31 2020 07:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35612 * 117.00365 * 2 1 4 4 C 1.39161 * 120.50222 * 359.97438 * 3 2 1 5 5 C 1.38310 * 118.62723 * 179.76398 * 4 3 2 6 6 C 1.39938 * 119.59585 * 0.47995 * 5 4 3 7 7 N 1.38903 * 119.49686 * 179.78289 * 6 5 4 8 8 C 1.46500 * 119.99857 * 359.73196 * 7 6 5 9 9 H 1.09004 * 109.47042 * 324.99640 * 8 7 6 10 10 C 1.52996 * 109.47368 * 84.99724 * 8 7 6 11 11 C 1.53000 * 109.47328 * 59.99845 * 10 8 7 12 12 C 1.52997 * 109.47060 * 60.00126 * 11 10 8 13 13 C 1.53006 * 109.47127 * 300.00449 * 12 11 10 14 14 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 15 15 N 1.46898 * 109.47006 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47164 * 59.99836 * 13 12 11 17 17 N 1.31864 * 121.00790 * 359.51039 * 6 5 4 18 18 C 1.33825 * 121.47504 * 0.25525 * 17 6 5 19 19 C 1.40913 * 119.85357 * 180.02562 * 18 17 6 20 20 H 1.07998 * 120.00066 * 180.02562 * 19 18 17 21 21 C 1.40029 * 119.99594 * 359.97438 * 19 18 17 22 22 N 1.30775 * 120.00069 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99894 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47188 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47529 * 119.99538 * 23 21 19 26 26 H 1.48503 * 109.47050 * 239.99858 * 23 21 19 27 27 H 1.08997 * 109.46874 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46905 * 299.99939 * 1 2 3 29 29 H 1.08997 * 109.46839 * 60.00018 * 1 2 3 30 30 H 1.07999 * 120.68472 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.19761 * 180.24474 * 5 4 3 32 32 H 0.96999 * 120.00634 * 179.72518 * 7 6 5 33 33 H 1.09004 * 109.47368 * 300.00056 * 10 8 7 34 34 H 1.09001 * 109.47372 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47398 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47194 * 300.00476 * 11 10 8 37 37 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 38 38 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 39 39 H 1.00905 * 111.00294 * 60.00339 * 15 13 12 40 40 H 1.00899 * 110.99915 * 183.95106 * 15 13 12 41 41 H 1.09002 * 109.47045 * 180.02562 * 16 13 12 42 42 H 1.09001 * 109.47375 * 59.99966 * 16 13 12 43 43 H 0.97005 * 120.00128 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 1.2972 2.3820 -0.0005 5 6 1.9652 3.5931 0.0045 6 6 3.3644 3.6107 -0.0003 7 7 4.0331 4.8281 0.0002 8 6 3.2737 6.0809 -0.0003 9 1 2.3659 5.9553 -0.5904 10 6 2.9008 6.4519 1.4364 11 6 4.1750 6.6282 2.2648 12 6 5.0291 7.7421 1.6559 13 6 5.4020 7.3712 0.2191 14 1 5.9670 6.4391 0.2194 15 7 6.2215 8.4409 -0.3658 16 6 4.1278 7.1948 -0.6092 17 7 4.0579 2.4891 0.0002 18 6 3.4545 1.2946 0.0001 19 6 4.2292 0.1175 0.0012 20 1 3.7447 -0.8478 0.0007 21 6 5.6271 0.1993 0.0018 22 7 6.2136 1.3682 0.0008 23 14 6.6540 -1.3610 0.0025 24 1 5.7566 -2.5443 0.0029 25 1 7.5114 -1.3900 -1.2097 26 1 7.5104 -1.3894 1.2153 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2178 2.3479 -0.0005 31 1 1.4102 4.5196 0.0082 32 1 5.0029 4.8489 0.0010 33 1 2.2923 5.6584 1.8703 34 1 2.3354 7.3838 1.4360 35 1 3.9093 6.8921 3.2885 36 1 4.7400 5.6961 2.2652 37 1 4.4641 8.6742 1.6554 38 1 5.9370 7.8675 2.2457 39 1 7.0696 8.5772 0.1636 40 1 6.4271 8.2500 -1.3350 41 1 4.3934 6.9302 -1.6327 42 1 3.5627 8.1269 -0.6096 43 1 7.1820 1.4249 0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162394067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:37 Heat of formation + Delta-G solvation = -6.638370 kcal Electronic energy + Delta-G solvation = -23892.569372 eV Core-core repulsion = 20551.418301 eV Total energy + Delta-G solvation = -3341.151071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.38485 -38.47609 -36.60801 -34.50221 -33.36510 -32.29317 -30.29072 -29.94537 -28.06147 -27.68611 -26.32600 -24.97983 -22.55451 -21.65786 -21.27257 -20.70151 -18.78224 -17.26774 -16.77221 -16.39047 -15.54178 -15.36485 -15.05462 -14.88362 -14.58923 -14.55839 -14.19416 -13.99711 -13.16105 -12.90330 -12.56802 -12.43092 -12.23354 -11.92440 -11.83185 -11.60442 -11.53020 -11.39739 -11.20988 -11.15338 -10.53624 -10.51915 -10.48909 -10.38054 -10.17301 -9.91349 -9.73491 -9.41935 -8.71074 -8.38093 -7.97113 -7.62501 -6.35281 -6.22102 -4.32295 2.84155 3.13547 3.16931 3.19707 3.29794 4.00977 4.21056 4.42726 4.66275 4.80992 4.87064 4.94920 5.27864 5.35227 5.45664 5.61200 5.65024 5.73781 5.81711 5.83458 5.86022 5.99301 6.02990 6.04238 6.12532 6.14135 6.18840 6.32307 6.37890 6.46584 6.55436 6.59982 6.79694 6.85633 7.12515 7.23500 7.35616 7.39529 7.55718 7.74880 8.25815 8.32937 8.50232 8.74817 8.83872 9.22587 10.22180 10.38388 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.005286 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.003075 B = 5296.101802 C = 6819.971426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.313 6.313 3 C -0.079 4.079 4 C -0.114 4.114 5 C -0.346 4.346 6 C 0.395 3.605 7 N -0.730 5.730 8 C 0.167 3.833 9 H 0.076 0.924 10 C -0.134 4.134 11 C -0.115 4.115 12 C -0.107 4.107 13 C 0.089 3.911 14 H 0.040 0.960 15 N -0.849 5.849 16 C -0.116 4.116 17 N -0.514 5.514 18 C 0.290 3.710 19 C -0.414 4.414 20 H 0.091 0.909 21 C 0.068 3.932 22 N -0.715 5.715 23 Si 0.906 3.094 24 H -0.259 1.259 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.392 0.608 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.338 0.662 40 H 0.340 0.660 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 9.192 0.911 9.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.126 4.126 4 C -0.139 4.139 5 C -0.373 4.373 6 C 0.158 3.842 7 N -0.367 5.367 8 C 0.059 3.941 9 H 0.094 0.906 10 C -0.173 4.173 11 C -0.153 4.153 12 C -0.145 4.145 13 C -0.022 4.022 14 H 0.058 0.942 15 N -0.378 5.378 16 C -0.154 4.154 17 N -0.237 5.237 18 C 0.161 3.839 19 C -0.446 4.446 20 H 0.109 0.891 21 C -0.156 4.156 22 N -0.337 5.337 23 Si 0.730 3.270 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.228 0.772 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.481 9.708 1.062 9.877 hybrid contribution 0.287 -1.137 -0.122 1.179 sum -1.194 8.570 0.941 8.704 Atomic orbital electron populations 1.22673 0.82268 1.01437 0.99606 1.85917 1.17772 1.27977 1.90947 1.20031 0.93439 0.83083 1.16075 1.20678 0.97208 0.92437 1.03529 1.20383 0.92918 0.96239 1.27721 1.18501 0.87724 0.86758 0.91262 1.44205 1.07545 1.01205 1.83742 1.20617 0.94772 0.83552 0.95114 0.90603 1.22021 0.97535 1.01022 0.96706 1.21433 0.96728 0.98962 0.98225 1.21518 0.99554 0.98966 0.94470 1.21332 0.94143 0.92142 0.94593 0.94193 1.58800 1.24168 1.47928 1.06950 1.21797 0.96106 0.98670 0.98861 1.68387 1.34767 0.94984 1.25567 1.17767 0.84995 0.91082 0.90028 1.19562 0.90499 0.93166 1.41364 0.89141 1.26069 0.98771 0.97065 0.93735 1.70184 1.09963 1.24396 1.29151 0.86294 0.79827 0.82505 0.78340 1.18276 1.19996 1.19995 0.90245 0.94540 0.94550 0.88404 0.88869 0.77187 0.91276 0.92167 0.92465 0.91223 0.91588 0.92699 0.85005 0.84818 0.91783 0.90466 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.83 101.05 0.99 1.64 16 2 O -0.31 -7.41 9.61 -18.53 -0.18 -7.59 16 3 C -0.08 -2.02 6.74 -38.10 -0.26 -2.28 16 4 C -0.11 -2.65 9.12 -39.21 -0.36 -3.00 16 5 C -0.35 -7.89 8.81 -38.92 -0.34 -8.23 16 6 C 0.40 9.45 7.63 -155.27 -1.18 8.27 16 7 N -0.73 -14.15 4.40 -53.86 -0.24 -14.38 16 8 C 0.17 2.57 2.46 -67.93 -0.17 2.41 16 9 H 0.08 1.22 6.44 -51.93 -0.33 0.89 16 10 C -0.13 -1.91 5.51 -26.73 -0.15 -2.06 16 11 C -0.12 -1.58 5.77 -26.73 -0.15 -1.74 16 12 C -0.11 -1.30 5.50 -26.73 -0.15 -1.45 16 13 C 0.09 1.11 3.07 -67.71 -0.21 0.90 16 14 H 0.04 0.57 6.51 -51.93 -0.34 0.23 16 15 N -0.85 -9.06 9.25 -4.67 -0.04 -9.10 16 16 C -0.12 -1.51 5.15 -26.73 -0.14 -1.64 16 17 N -0.51 -14.05 7.88 -10.20 -0.08 -14.13 16 18 C 0.29 8.14 6.56 -84.85 -0.56 7.58 16 19 C -0.41 -11.42 8.94 -37.90 -0.34 -11.76 16 20 H 0.09 2.45 7.31 -52.49 -0.38 2.06 16 21 C 0.07 1.76 5.50 -17.33 -0.10 1.66 16 22 N -0.71 -18.85 11.45 55.55 0.64 -18.22 16 23 Si 0.91 19.00 29.56 -169.99 -5.02 13.98 16 24 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 30 H 0.10 1.98 6.43 -52.49 -0.34 1.65 16 31 H 0.09 1.89 6.01 -52.49 -0.32 1.58 16 32 H 0.39 7.77 6.99 -40.82 -0.29 7.48 16 33 H 0.07 1.13 7.61 -51.93 -0.40 0.74 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.13 7.60 -51.93 -0.39 0.74 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.34 3.17 9.04 -39.29 -0.36 2.82 16 40 H 0.34 3.34 8.99 -39.29 -0.35 2.98 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.27 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -29.74 337.64 -9.32 -39.06 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -6.39 Total: 15.00 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.10 Total: -9.70 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.28 Total: -55.83 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.18 Total: -7.59 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.74 -9.32 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162394067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.423 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds