Wall clock time and date at job start Tue Mar 31 2020 07:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35612 * 117.00365 * 2 1 4 4 C 1.39161 * 120.50222 * 359.97438 * 3 2 1 5 5 C 1.38310 * 118.62723 * 179.76398 * 4 3 2 6 6 C 1.39938 * 119.59585 * 0.47995 * 5 4 3 7 7 N 1.38903 * 119.49686 * 179.78289 * 6 5 4 8 8 C 1.46500 * 119.99857 * 359.73196 * 7 6 5 9 9 H 1.09004 * 109.47042 * 324.99640 * 8 7 6 10 10 C 1.52996 * 109.47368 * 84.99724 * 8 7 6 11 11 C 1.53000 * 109.47328 * 59.99845 * 10 8 7 12 12 C 1.52997 * 109.47060 * 60.00126 * 11 10 8 13 13 C 1.53006 * 109.47127 * 300.00449 * 12 11 10 14 14 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 15 15 N 1.46898 * 109.47006 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47164 * 59.99836 * 13 12 11 17 17 N 1.31864 * 121.00790 * 359.51039 * 6 5 4 18 18 C 1.33825 * 121.47504 * 0.25525 * 17 6 5 19 19 C 1.40913 * 119.85357 * 180.02562 * 18 17 6 20 20 H 1.07998 * 120.00066 * 180.02562 * 19 18 17 21 21 C 1.40029 * 119.99594 * 359.97438 * 19 18 17 22 22 N 1.30775 * 120.00069 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99894 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47188 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47529 * 119.99538 * 23 21 19 26 26 H 1.48503 * 109.47050 * 239.99858 * 23 21 19 27 27 H 1.08997 * 109.46874 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46905 * 299.99939 * 1 2 3 29 29 H 1.08997 * 109.46839 * 60.00018 * 1 2 3 30 30 H 1.07999 * 120.68472 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.19761 * 180.24474 * 5 4 3 32 32 H 0.96999 * 120.00634 * 179.72518 * 7 6 5 33 33 H 1.09004 * 109.47368 * 300.00056 * 10 8 7 34 34 H 1.09001 * 109.47372 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47398 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47194 * 300.00476 * 11 10 8 37 37 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 38 38 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 39 39 H 1.00905 * 111.00294 * 60.00339 * 15 13 12 40 40 H 1.00899 * 110.99915 * 183.95106 * 15 13 12 41 41 H 1.09002 * 109.47045 * 180.02562 * 16 13 12 42 42 H 1.09001 * 109.47375 * 59.99966 * 16 13 12 43 43 H 0.97005 * 120.00128 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 1.2972 2.3820 -0.0005 5 6 1.9652 3.5931 0.0045 6 6 3.3644 3.6107 -0.0003 7 7 4.0331 4.8281 0.0002 8 6 3.2737 6.0809 -0.0003 9 1 2.3659 5.9553 -0.5904 10 6 2.9008 6.4519 1.4364 11 6 4.1750 6.6282 2.2648 12 6 5.0291 7.7421 1.6559 13 6 5.4020 7.3712 0.2191 14 1 5.9670 6.4391 0.2194 15 7 6.2215 8.4409 -0.3658 16 6 4.1278 7.1948 -0.6092 17 7 4.0579 2.4891 0.0002 18 6 3.4545 1.2946 0.0001 19 6 4.2292 0.1175 0.0012 20 1 3.7447 -0.8478 0.0007 21 6 5.6271 0.1993 0.0018 22 7 6.2136 1.3682 0.0008 23 14 6.6540 -1.3610 0.0025 24 1 5.7566 -2.5443 0.0029 25 1 7.5114 -1.3900 -1.2097 26 1 7.5104 -1.3894 1.2153 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2178 2.3479 -0.0005 31 1 1.4102 4.5196 0.0082 32 1 5.0029 4.8489 0.0010 33 1 2.2923 5.6584 1.8703 34 1 2.3354 7.3838 1.4360 35 1 3.9093 6.8921 3.2885 36 1 4.7400 5.6961 2.2652 37 1 4.4641 8.6742 1.6554 38 1 5.9370 7.8675 2.2457 39 1 7.0696 8.5772 0.1636 40 1 6.4271 8.2500 -1.3350 41 1 4.3934 6.9302 -1.6327 42 1 3.5627 8.1269 -0.6096 43 1 7.1820 1.4249 0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162394067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:36 Heat of formation + Delta-G solvation = -26.491357 kcal Electronic energy + Delta-G solvation = -23893.430262 eV Core-core repulsion = 20551.418301 eV Total energy + Delta-G solvation = -3342.011961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.87014 -40.01128 -38.29558 -36.04142 -34.95335 -33.59043 -32.15626 -31.40647 -29.52200 -28.85552 -27.96567 -26.76512 -23.90462 -23.02528 -22.82271 -22.25056 -20.14540 -19.07780 -18.45185 -18.08671 -16.80033 -16.76126 -16.37092 -16.23605 -16.19037 -16.00133 -15.44566 -15.32410 -14.85151 -14.48607 -14.16250 -14.06947 -13.43791 -13.25724 -13.22446 -12.98923 -12.88950 -12.85776 -12.74835 -12.55174 -12.38043 -12.05411 -12.03890 -11.62554 -11.50597 -11.36899 -11.28771 -10.99750 -10.06407 -9.87514 -9.63754 -9.52417 -8.24672 -8.01378 -6.30500 1.00938 1.30818 1.40863 1.55972 1.56197 2.26124 2.67037 2.92561 3.06974 3.46744 3.76767 3.83930 4.01914 4.20156 4.23706 4.29366 4.33160 4.46269 4.51834 4.52658 4.56684 4.60596 4.70273 4.75517 4.77844 4.85558 4.95466 5.00309 5.11410 5.15085 5.22399 5.29832 5.34925 5.40231 5.48661 5.55847 5.78400 5.91780 6.22095 6.28615 6.44983 6.58872 6.79146 6.88230 7.04702 7.37492 8.33167 8.50254 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.005286 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.003075 B = 5296.101802 C = 6819.971426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.339 6.339 3 C -0.102 4.102 4 C -0.113 4.113 5 C -0.341 4.341 6 C 0.379 3.621 7 N -0.722 5.722 8 C 0.163 3.837 9 H 0.073 0.927 10 C -0.128 4.128 11 C -0.112 4.112 12 C -0.099 4.099 13 C 0.093 3.907 14 H 0.016 0.984 15 N -0.844 5.844 16 C -0.106 4.106 17 N -0.545 5.545 18 C 0.254 3.746 19 C -0.452 4.452 20 H 0.081 0.919 21 C 0.026 3.974 22 N -0.748 5.748 23 Si 0.983 3.017 24 H -0.259 1.259 25 H -0.265 1.265 26 H -0.265 1.265 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.388 0.612 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.347 0.653 40 H 0.345 0.655 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.479 10.676 0.961 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.254 6.254 3 C -0.150 4.150 4 C -0.137 4.137 5 C -0.367 4.367 6 C 0.140 3.860 7 N -0.358 5.358 8 C 0.057 3.943 9 H 0.091 0.909 10 C -0.167 4.167 11 C -0.150 4.150 12 C -0.137 4.137 13 C -0.019 4.019 14 H 0.034 0.966 15 N -0.374 5.374 16 C -0.145 4.145 17 N -0.268 5.268 18 C 0.125 3.875 19 C -0.485 4.485 20 H 0.100 0.900 21 C -0.195 4.195 22 N -0.371 5.371 23 Si 0.804 3.196 24 H -0.183 1.183 25 H -0.190 1.190 26 H -0.190 1.190 27 H 0.128 0.872 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.223 0.777 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.105 11.245 1.111 11.495 hybrid contribution 0.336 -1.467 -0.134 1.511 sum -1.769 9.778 0.978 9.985 Atomic orbital electron populations 1.23008 0.79185 1.03921 1.00515 1.85849 1.20993 1.27413 1.91095 1.20079 0.93240 0.84532 1.17128 1.21047 0.98801 0.91738 1.02143 1.20731 0.92723 0.97335 1.25925 1.18915 0.88702 0.87375 0.91012 1.44368 1.07517 1.01194 1.82701 1.20880 0.94722 0.82537 0.96208 0.90900 1.21965 0.97692 1.01548 0.95486 1.21385 0.96375 0.98104 0.99181 1.21449 0.99712 0.98559 0.93985 1.21218 0.93950 0.91699 0.95026 0.96631 1.58778 1.24602 1.46599 1.07417 1.21715 0.96132 0.98276 0.98343 1.68328 1.36149 0.95783 1.26551 1.18199 0.86723 0.91688 0.90915 1.19732 0.91902 0.92944 1.43908 0.90041 1.26898 0.99241 1.00600 0.92805 1.70260 1.10583 1.26458 1.29824 0.85150 0.77820 0.77864 0.78793 1.18281 1.18978 1.19024 0.87165 0.93496 0.93480 0.85238 0.86146 0.77693 0.93607 0.89166 0.91201 0.94577 0.90212 0.91987 0.84027 0.84202 0.92248 0.88440 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.83 113.37 1.11 2.10 16 2 O -0.34 -16.31 9.61 -89.23 -0.86 -17.17 16 3 C -0.10 -5.37 6.74 23.23 0.16 -5.21 16 4 C -0.11 -5.19 9.12 22.51 0.21 -4.98 16 5 C -0.34 -15.39 8.81 22.70 0.20 -15.19 16 6 C 0.38 18.49 7.63 133.45 1.02 19.51 16 7 N -0.72 -28.38 4.40 -324.32 -1.43 -29.81 16 8 C 0.16 4.81 2.46 44.99 0.11 4.92 16 9 H 0.07 2.21 6.44 -2.38 -0.02 2.20 16 10 C -0.13 -3.44 5.51 30.59 0.17 -3.27 16 11 C -0.11 -2.96 5.77 30.59 0.18 -2.78 16 12 C -0.10 -2.19 5.50 30.60 0.17 -2.02 16 13 C 0.09 2.17 3.07 44.92 0.14 2.31 16 14 H 0.02 0.45 6.51 -2.39 -0.02 0.43 16 15 N -0.84 -16.19 9.25 -168.68 -1.56 -17.75 16 16 C -0.11 -2.56 5.15 30.59 0.16 -2.40 16 17 N -0.54 -30.97 7.88 -186.18 -1.47 -32.44 16 18 C 0.25 14.86 6.56 40.23 0.26 15.12 16 19 C -0.45 -26.20 8.94 23.36 0.21 -25.99 16 20 H 0.08 4.65 7.31 -2.91 -0.02 4.63 16 21 C 0.03 1.38 5.50 85.28 0.47 1.85 16 22 N -0.75 -40.98 11.45 21.84 0.25 -40.73 16 23 Si 0.98 40.06 29.56 68.60 2.03 42.09 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 26 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 27 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.05 1.47 7.69 -2.39 -0.02 1.45 16 29 H 0.05 1.47 7.69 -2.39 -0.02 1.45 16 30 H 0.13 4.99 6.43 -2.91 -0.02 4.97 16 31 H 0.12 4.67 6.01 -2.91 -0.02 4.66 16 32 H 0.39 15.90 6.99 -92.71 -0.65 15.25 16 33 H 0.05 1.45 7.61 -2.39 -0.02 1.43 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.19 7.60 -2.39 -0.02 1.17 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.35 5.80 9.04 -89.69 -0.81 4.98 16 40 H 0.35 6.14 8.99 -89.69 -0.81 5.33 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.28 13.57 8.30 -92.70 -0.77 12.80 16 Total: -1.00 -67.49 337.64 0.31 -67.18 By element: Atomic # 1 Polarization: 45.88 SS G_CDS: -1.21 Total: 44.67 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 4.56 Total: -16.04 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -4.20 Total: -120.73 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.86 Total: -17.17 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -67.49 0.31 -67.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162394067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.689 kcal (2) G-P(sol) polarization free energy of solvation -67.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds