Wall clock time and date at job start Tue Mar 31 2020 07:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35623 * 117.00108 * 2 1 4 4 C 1.39149 * 120.50207 * 0.23095 * 3 2 1 5 5 C 1.38306 * 118.62994 * 180.24945 * 4 3 2 6 6 C 1.39948 * 119.59237 * 359.47550 * 5 4 3 7 7 N 1.38906 * 119.49410 * 180.28271 * 6 5 4 8 8 C 1.46497 * 120.00011 * 359.97438 * 7 6 5 9 9 H 1.08994 * 109.47024 * 35.00625 * 8 7 6 10 10 C 1.52998 * 109.47335 * 275.00058 * 8 7 6 11 11 C 1.52998 * 109.47149 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47344 * 60.00175 * 11 10 8 13 13 C 1.52999 * 109.47184 * 300.00192 * 12 11 10 14 14 H 1.09001 * 109.47028 * 300.00155 * 13 12 11 15 15 N 1.46904 * 109.47564 * 179.97438 * 13 12 11 16 16 C 1.52998 * 109.47510 * 59.99650 * 13 12 11 17 17 N 1.31862 * 121.00495 * 0.30086 * 6 5 4 18 18 C 1.33819 * 121.47747 * 359.97438 * 17 6 5 19 19 C 1.40911 * 119.85243 * 179.97438 * 18 17 6 20 20 H 1.08000 * 120.00203 * 180.02562 * 19 18 17 21 21 C 1.40030 * 120.00124 * 359.97438 * 19 18 17 22 22 N 1.30778 * 119.99781 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00364 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47006 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47256 * 120.00426 * 23 21 19 26 26 H 1.48500 * 109.47222 * 240.00305 * 23 21 19 27 27 H 1.09002 * 109.47376 * 60.00459 * 1 2 3 28 28 H 1.09002 * 109.47036 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47541 * 300.00099 * 1 2 3 30 30 H 1.08005 * 120.68514 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.20790 * 179.75855 * 5 4 3 32 32 H 0.96996 * 119.99558 * 180.02562 * 7 6 5 33 33 H 1.09005 * 109.47093 * 300.00416 * 10 8 7 34 34 H 1.09002 * 109.46733 * 60.00398 * 10 8 7 35 35 H 1.09005 * 109.47006 * 180.02562 * 11 10 8 36 36 H 1.09005 * 109.47270 * 300.00072 * 11 10 8 37 37 H 1.09005 * 109.47021 * 59.99744 * 12 11 10 38 38 H 1.08996 * 109.47629 * 179.97438 * 12 11 10 39 39 H 1.00897 * 110.99573 * 59.99619 * 15 13 12 40 40 H 1.00898 * 111.00005 * 183.95586 * 15 13 12 41 41 H 1.08995 * 109.47575 * 180.02562 * 16 13 12 42 42 H 1.08997 * 109.47207 * 59.99910 * 16 13 12 43 43 H 0.97004 * 120.00262 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0048 5 6 1.9649 3.5931 -0.0006 6 6 3.3643 3.6107 0.0003 7 7 4.0329 4.8283 0.0008 8 6 3.2734 6.0810 -0.0003 9 1 2.3647 5.9555 0.5883 10 6 2.9030 6.4517 -1.4377 11 6 2.1104 7.7604 -1.4389 12 6 2.9638 8.8741 -0.8288 13 6 3.3343 8.5035 0.6086 14 1 2.4255 8.3782 1.1973 15 7 4.1542 9.5725 1.1942 16 6 4.1269 7.1948 0.6099 17 7 4.0577 2.4892 0.0004 18 6 3.4544 1.2947 0.0002 19 6 4.2291 0.1176 -0.0003 20 1 3.7447 -0.8477 -0.0009 21 6 5.6270 0.1994 -0.0009 22 7 6.2135 1.3683 -0.0006 23 14 6.6540 -1.3609 -0.0007 24 1 5.7566 -2.5442 0.0008 25 1 7.5104 -1.3900 -1.2135 26 1 7.5114 -1.3891 1.2114 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2176 2.3479 0.0091 31 1 1.4099 4.5197 -0.0010 32 1 5.0026 4.8490 0.0011 33 1 3.8119 6.5772 -2.0263 34 1 2.2953 5.6581 -1.8725 35 1 1.8462 8.0242 -2.4630 36 1 1.2015 7.6352 -0.8502 37 1 3.8727 8.9992 -1.4175 38 1 2.3994 9.8065 -0.8300 39 1 3.6528 10.4480 1.2048 40 1 4.4657 9.3228 2.1209 41 1 4.3904 6.9305 1.6339 42 1 5.0357 7.3199 0.0212 43 1 7.1819 1.4251 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162394071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:41 Heat of formation + Delta-G solvation = -9.559080 kcal Electronic energy + Delta-G solvation = -23532.274337 eV Core-core repulsion = 20190.996614 eV Total energy + Delta-G solvation = -3341.277722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.23605 -38.48097 -36.70225 -34.71171 -33.39711 -32.57921 -30.25898 -29.88897 -28.16340 -27.49787 -26.30916 -24.97850 -22.49720 -21.73484 -21.36835 -20.07174 -19.64985 -17.39062 -16.62397 -16.38234 -15.56815 -15.50325 -14.99790 -14.91653 -14.58603 -14.57856 -14.14265 -14.06749 -13.33487 -12.80480 -12.64750 -12.52763 -12.31898 -12.23611 -11.84680 -11.59623 -11.52349 -11.20934 -11.17293 -10.97948 -10.63874 -10.58967 -10.50134 -10.34809 -10.27106 -10.13602 -9.72175 -9.41702 -8.82986 -8.38618 -7.96577 -7.61598 -6.33575 -6.22186 -4.31333 2.85447 3.15398 3.17535 3.21436 3.30837 4.02245 4.05817 4.37484 4.65166 4.77137 4.87439 4.95704 5.17784 5.24736 5.36564 5.49528 5.55860 5.58437 5.71402 5.83558 5.83582 5.95528 6.01300 6.03591 6.08561 6.12773 6.14544 6.21910 6.30704 6.42148 6.48789 6.59783 6.80156 6.86456 7.01989 7.25004 7.28765 7.36653 7.55832 7.75152 8.26873 8.33703 8.50663 8.76057 8.85008 9.23262 10.23382 10.39975 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.004413 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.906939 B = 6343.943669 C = 7655.815996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.312 6.312 3 C -0.078 4.078 4 C -0.114 4.114 5 C -0.347 4.347 6 C 0.396 3.604 7 N -0.733 5.733 8 C 0.171 3.829 9 H 0.072 0.928 10 C -0.135 4.135 11 C -0.115 4.115 12 C -0.111 4.111 13 C 0.096 3.904 14 H 0.035 0.965 15 N -0.848 5.848 16 C -0.118 4.118 17 N -0.514 5.514 18 C 0.289 3.711 19 C -0.413 4.413 20 H 0.091 0.909 21 C 0.068 3.932 22 N -0.714 5.714 23 Si 0.906 3.094 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.395 0.605 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.338 0.662 40 H 0.341 0.659 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 11.101 0.414 12.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.126 4.126 4 C -0.139 4.139 5 C -0.374 4.374 6 C 0.158 3.842 7 N -0.369 5.369 8 C 0.063 3.937 9 H 0.090 0.910 10 C -0.175 4.175 11 C -0.154 4.154 12 C -0.149 4.149 13 C -0.016 4.016 14 H 0.053 0.947 15 N -0.378 5.378 16 C -0.157 4.157 17 N -0.236 5.236 18 C 0.161 3.839 19 C -0.446 4.446 20 H 0.109 0.891 21 C -0.157 4.157 22 N -0.336 5.336 23 Si 0.731 3.269 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.229 0.771 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.708 10.989 -0.180 11.600 hybrid contribution -1.208 -0.301 0.725 1.441 sum -4.916 10.689 0.545 11.778 Atomic orbital electron populations 1.22673 0.82288 1.01437 0.99594 1.85918 1.17757 1.27963 1.90944 1.20029 0.93436 0.83074 1.16064 1.20667 0.97190 0.92426 1.03570 1.20375 0.92897 0.96224 1.27883 1.18485 0.87702 0.86699 0.91297 1.44118 1.07704 1.01233 1.83812 1.20544 0.94755 0.83369 0.95023 0.91012 1.22085 1.00441 0.96703 0.98231 1.21483 0.98389 0.94907 1.00625 1.21560 1.00218 0.97802 0.95314 1.21263 0.93866 0.91103 0.95372 0.94713 1.58711 1.45384 1.05374 1.28337 1.21785 0.99266 0.93029 1.01576 1.68385 1.34755 0.94972 1.25531 1.17772 0.85000 0.91079 0.90059 1.19570 0.90525 0.93155 1.41315 0.89114 1.26079 0.98769 0.97093 0.93763 1.70179 1.10087 1.24417 1.28884 0.86285 0.79820 0.82436 0.78374 1.18298 1.19957 1.19972 0.94551 0.90239 0.94563 0.88410 0.88930 0.77064 0.91924 0.91191 0.91865 0.92165 0.91135 0.92547 0.84960 0.84637 0.91729 0.90798 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.83 101.05 0.99 1.64 16 2 O -0.31 -7.43 9.61 -18.57 -0.18 -7.61 16 3 C -0.08 -2.03 6.74 -38.11 -0.26 -2.28 16 4 C -0.11 -2.67 9.12 -39.22 -0.36 -3.02 16 5 C -0.35 -8.01 8.83 -38.92 -0.34 -8.35 16 6 C 0.40 9.63 7.63 -155.26 -1.18 8.45 16 7 N -0.73 -14.66 5.24 -53.86 -0.28 -14.94 16 8 C 0.17 2.67 2.14 -67.93 -0.15 2.53 16 9 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 10 C -0.14 -1.96 5.41 -26.73 -0.14 -2.10 16 11 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 12 C -0.11 -1.17 5.50 -26.73 -0.15 -1.32 16 13 C 0.10 1.04 3.25 -67.71 -0.22 0.82 16 14 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 15 N -0.85 -8.10 9.25 -4.67 -0.04 -8.14 16 16 C -0.12 -1.55 4.93 -26.73 -0.13 -1.68 16 17 N -0.51 -14.22 7.88 -10.20 -0.08 -14.30 16 18 C 0.29 8.19 6.56 -84.85 -0.56 7.63 16 19 C -0.41 -11.49 8.94 -37.90 -0.34 -11.83 16 20 H 0.09 2.46 7.31 -52.49 -0.38 2.08 16 21 C 0.07 1.76 5.50 -17.33 -0.10 1.67 16 22 N -0.71 -19.04 11.45 55.55 0.64 -18.41 16 23 Si 0.91 19.11 29.56 -169.99 -5.02 14.08 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 H 0.04 0.60 7.70 -51.93 -0.40 0.20 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 30 H 0.10 1.99 6.44 -52.48 -0.34 1.65 16 31 H 0.09 1.90 6.03 -52.49 -0.32 1.59 16 32 H 0.39 8.00 8.72 -40.82 -0.36 7.64 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.16 7.64 -51.93 -0.40 0.76 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.34 2.61 9.04 -39.29 -0.36 2.26 16 40 H 0.34 2.96 8.99 -39.29 -0.35 2.61 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.27 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -30.36 342.13 -9.47 -39.83 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -6.57 Total: 13.66 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -3.09 Total: -9.32 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.23 Total: -55.79 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.18 Total: -7.61 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.36 -9.47 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162394071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.272 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds