Wall clock time and date at job start Tue Mar 31 2020 07:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35623 * 117.00108 * 2 1 4 4 C 1.39149 * 120.50207 * 0.23095 * 3 2 1 5 5 C 1.38306 * 118.62994 * 180.24945 * 4 3 2 6 6 C 1.39948 * 119.59237 * 359.47550 * 5 4 3 7 7 N 1.38906 * 119.49410 * 180.28271 * 6 5 4 8 8 C 1.46497 * 120.00011 * 359.97438 * 7 6 5 9 9 H 1.08994 * 109.47024 * 35.00625 * 8 7 6 10 10 C 1.52998 * 109.47335 * 275.00058 * 8 7 6 11 11 C 1.52998 * 109.47149 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47344 * 60.00175 * 11 10 8 13 13 C 1.52999 * 109.47184 * 300.00192 * 12 11 10 14 14 H 1.09001 * 109.47028 * 300.00155 * 13 12 11 15 15 N 1.46904 * 109.47564 * 179.97438 * 13 12 11 16 16 C 1.52998 * 109.47510 * 59.99650 * 13 12 11 17 17 N 1.31862 * 121.00495 * 0.30086 * 6 5 4 18 18 C 1.33819 * 121.47747 * 359.97438 * 17 6 5 19 19 C 1.40911 * 119.85243 * 179.97438 * 18 17 6 20 20 H 1.08000 * 120.00203 * 180.02562 * 19 18 17 21 21 C 1.40030 * 120.00124 * 359.97438 * 19 18 17 22 22 N 1.30778 * 119.99781 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00364 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47006 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47256 * 120.00426 * 23 21 19 26 26 H 1.48500 * 109.47222 * 240.00305 * 23 21 19 27 27 H 1.09002 * 109.47376 * 60.00459 * 1 2 3 28 28 H 1.09002 * 109.47036 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47541 * 300.00099 * 1 2 3 30 30 H 1.08005 * 120.68514 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.20790 * 179.75855 * 5 4 3 32 32 H 0.96996 * 119.99558 * 180.02562 * 7 6 5 33 33 H 1.09005 * 109.47093 * 300.00416 * 10 8 7 34 34 H 1.09002 * 109.46733 * 60.00398 * 10 8 7 35 35 H 1.09005 * 109.47006 * 180.02562 * 11 10 8 36 36 H 1.09005 * 109.47270 * 300.00072 * 11 10 8 37 37 H 1.09005 * 109.47021 * 59.99744 * 12 11 10 38 38 H 1.08996 * 109.47629 * 179.97438 * 12 11 10 39 39 H 1.00897 * 110.99573 * 59.99619 * 15 13 12 40 40 H 1.00898 * 111.00005 * 183.95586 * 15 13 12 41 41 H 1.08995 * 109.47575 * 180.02562 * 16 13 12 42 42 H 1.08997 * 109.47207 * 59.99910 * 16 13 12 43 43 H 0.97004 * 120.00262 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0048 5 6 1.9649 3.5931 -0.0006 6 6 3.3643 3.6107 0.0003 7 7 4.0329 4.8283 0.0008 8 6 3.2734 6.0810 -0.0003 9 1 2.3647 5.9555 0.5883 10 6 2.9030 6.4517 -1.4377 11 6 2.1104 7.7604 -1.4389 12 6 2.9638 8.8741 -0.8288 13 6 3.3343 8.5035 0.6086 14 1 2.4255 8.3782 1.1973 15 7 4.1542 9.5725 1.1942 16 6 4.1269 7.1948 0.6099 17 7 4.0577 2.4892 0.0004 18 6 3.4544 1.2947 0.0002 19 6 4.2291 0.1176 -0.0003 20 1 3.7447 -0.8477 -0.0009 21 6 5.6270 0.1994 -0.0009 22 7 6.2135 1.3683 -0.0006 23 14 6.6540 -1.3609 -0.0007 24 1 5.7566 -2.5442 0.0008 25 1 7.5104 -1.3900 -1.2135 26 1 7.5114 -1.3891 1.2114 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2176 2.3479 0.0091 31 1 1.4099 4.5197 -0.0010 32 1 5.0026 4.8490 0.0011 33 1 3.8119 6.5772 -2.0263 34 1 2.2953 5.6581 -1.8725 35 1 1.8462 8.0242 -2.4630 36 1 1.2015 7.6352 -0.8502 37 1 3.8727 8.9992 -1.4175 38 1 2.3994 9.8065 -0.8300 39 1 3.6528 10.4480 1.2048 40 1 4.4657 9.3228 2.1209 41 1 4.3904 6.9305 1.6339 42 1 5.0357 7.3199 0.0212 43 1 7.1819 1.4251 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162394071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:40 Heat of formation + Delta-G solvation = -30.320479 kcal Electronic energy + Delta-G solvation = -23533.174618 eV Core-core repulsion = 20190.996614 eV Total energy + Delta-G solvation = -3342.178004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.78606 -39.90927 -38.37347 -36.23559 -35.03995 -33.76388 -32.15927 -31.37440 -29.50450 -28.69607 -27.95945 -26.77646 -23.84950 -23.06504 -22.92961 -21.68250 -20.72889 -19.28867 -18.34598 -18.07717 -16.99742 -16.66687 -16.25909 -16.21098 -16.17347 -15.93390 -15.54092 -15.20635 -14.93778 -14.40321 -14.21589 -14.00383 -13.87242 -13.32659 -13.28742 -13.09298 -12.88758 -12.82007 -12.56512 -12.48513 -12.20776 -12.05812 -11.94858 -11.62597 -11.51797 -11.40564 -11.36972 -11.16435 -10.08667 -9.89319 -9.59454 -9.55277 -8.24685 -8.04670 -6.31294 1.00136 1.29387 1.41975 1.56572 1.57646 2.26942 2.58776 2.92253 3.05075 3.46865 3.78845 3.94662 4.00483 4.10403 4.21971 4.27913 4.34335 4.43198 4.48096 4.51989 4.53184 4.53941 4.65262 4.67919 4.75648 4.89630 4.94094 5.02731 5.11375 5.17819 5.21060 5.27169 5.33500 5.37686 5.48825 5.54496 5.75907 5.90081 6.26014 6.28183 6.43985 6.63747 6.77169 6.86721 7.03091 7.36033 8.31929 8.50416 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.004413 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.906939 B = 6343.943669 C = 7655.815996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.338 6.338 3 C -0.100 4.100 4 C -0.112 4.112 5 C -0.342 4.342 6 C 0.378 3.622 7 N -0.730 5.730 8 C 0.169 3.831 9 H 0.068 0.932 10 C -0.129 4.129 11 C -0.108 4.108 12 C -0.106 4.106 13 C 0.101 3.899 14 H 0.041 0.959 15 N -0.852 5.852 16 C -0.109 4.109 17 N -0.545 5.545 18 C 0.252 3.748 19 C -0.452 4.452 20 H 0.083 0.917 21 C 0.025 3.975 22 N -0.749 5.749 23 Si 0.985 3.015 24 H -0.259 1.259 25 H -0.265 1.265 26 H -0.265 1.265 27 H 0.047 0.953 28 H 0.111 0.889 29 H 0.047 0.953 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.390 0.610 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.352 0.648 40 H 0.346 0.654 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 12.435 0.496 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.148 4.148 4 C -0.137 4.137 5 C -0.368 4.368 6 C 0.140 3.860 7 N -0.364 5.364 8 C 0.063 3.937 9 H 0.086 0.914 10 C -0.169 4.169 11 C -0.147 4.147 12 C -0.144 4.144 13 C -0.010 4.010 14 H 0.059 0.941 15 N -0.383 5.383 16 C -0.148 4.148 17 N -0.268 5.268 18 C 0.124 3.876 19 C -0.484 4.484 20 H 0.101 0.899 21 C -0.196 4.196 22 N -0.372 5.372 23 Si 0.805 3.195 24 H -0.182 1.182 25 H -0.190 1.190 26 H -0.190 1.190 27 H 0.065 0.935 28 H 0.129 0.871 29 H 0.065 0.935 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.224 0.776 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.804 12.384 -0.096 13.284 hybrid contribution -1.010 -0.602 0.702 1.369 sum -5.815 11.782 0.606 13.153 Atomic orbital electron populations 1.23016 0.79157 1.03963 1.00534 1.85852 1.21019 1.27333 1.91064 1.20069 0.93207 0.84550 1.16947 1.21037 0.98833 0.91665 1.02159 1.20710 0.92635 0.97345 1.26087 1.18897 0.88721 0.87261 0.91167 1.44334 1.07716 1.01413 1.82929 1.20777 0.94562 0.82261 0.96066 0.91398 1.21991 1.00200 0.97874 0.96787 1.21444 0.98189 0.93189 1.01841 1.21525 0.99998 0.98328 0.94565 1.21159 0.93670 0.90154 0.96065 0.94129 1.58649 1.45340 1.05567 1.28784 1.21687 0.98860 0.93498 1.00723 1.68325 1.36161 0.95788 1.26528 1.18214 0.86779 0.91659 0.90970 1.19757 0.91932 0.92954 1.43783 0.89899 1.26927 0.99255 1.00669 0.92764 1.70257 1.10729 1.26575 1.29637 0.85127 0.77792 0.77733 0.78831 1.18213 1.18977 1.18957 0.93479 0.87117 0.93454 0.85127 0.86289 0.77600 0.92684 0.93521 0.90525 0.91346 0.91918 0.90263 0.83438 0.84056 0.92275 0.91539 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.83 113.37 1.11 2.08 16 2 O -0.34 -16.26 9.61 -89.35 -0.86 -17.11 16 3 C -0.10 -5.27 6.74 23.23 0.16 -5.11 16 4 C -0.11 -5.19 9.12 22.51 0.21 -4.99 16 5 C -0.34 -15.61 8.83 22.70 0.20 -15.41 16 6 C 0.38 18.80 7.63 133.45 1.02 19.82 16 7 N -0.73 -29.75 5.24 -324.32 -1.70 -31.45 16 8 C 0.17 5.20 2.14 44.99 0.10 5.30 16 9 H 0.07 2.15 6.43 -2.39 -0.02 2.14 16 10 C -0.13 -3.64 5.41 30.59 0.17 -3.48 16 11 C -0.11 -2.20 5.92 30.59 0.18 -2.01 16 12 C -0.11 -1.94 5.50 30.59 0.17 -1.77 16 13 C 0.10 1.98 3.25 44.91 0.15 2.12 16 14 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 15 N -0.85 -14.18 9.25 -168.67 -1.56 -15.74 16 16 C -0.11 -2.77 4.93 30.60 0.15 -2.61 16 17 N -0.54 -31.34 7.88 -186.18 -1.47 -32.81 16 18 C 0.25 14.88 6.56 40.23 0.26 15.15 16 19 C -0.45 -26.26 8.94 23.36 0.21 -26.05 16 20 H 0.08 4.73 7.31 -2.91 -0.02 4.71 16 21 C 0.03 1.35 5.50 85.28 0.47 1.82 16 22 N -0.75 -41.43 11.45 21.84 0.25 -41.18 16 23 Si 0.98 40.20 29.56 68.60 2.03 42.22 16 24 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 25 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 27 H 0.05 1.47 7.70 -2.39 -0.02 1.45 16 28 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.05 1.47 7.68 -2.39 -0.02 1.45 16 30 H 0.13 5.03 6.44 -2.91 -0.02 5.01 16 31 H 0.12 4.70 6.03 -2.91 -0.02 4.68 16 32 H 0.39 16.39 8.72 -92.71 -0.81 15.58 16 33 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.05 1.52 7.64 -2.39 -0.02 1.50 16 35 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.35 4.38 9.04 -89.70 -0.81 3.57 16 40 H 0.35 5.28 8.99 -89.70 -0.81 4.48 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.28 13.76 8.30 -92.70 -0.77 12.99 16 Total: -1.00 -68.72 342.13 -0.14 -68.86 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: -1.38 Total: 42.36 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 4.54 Total: -15.15 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -4.48 Total: -121.17 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.86 Total: -17.11 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.22 kcal Total: -68.72 -0.14 -68.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162394071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.540 kcal (2) G-P(sol) polarization free energy of solvation -68.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds