Wall clock time and date at job start Tue Mar 31 2020 07:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35533 * 125.67654 * 2 1 4 4 C 1.35452 * 108.86950 * 179.97438 * 3 2 1 5 5 C 1.39836 * 107.86767 * 0.02562 * 4 3 2 6 6 C 1.37655 * 125.67503 * 179.97438 * 2 1 3 7 7 C 1.46674 * 126.23465 * 0.04090 * 6 2 1 8 8 O 1.21700 * 119.99773 * 173.34198 * 7 6 2 9 9 N 1.34777 * 120.00246 * 353.34217 * 7 6 2 10 10 C 1.46494 * 119.99890 * 184.73162 * 9 7 6 11 11 C 1.53003 * 109.46993 * 175.02900 * 10 9 7 12 12 C 1.52999 * 109.47061 * 183.54997 * 11 10 9 13 13 C 1.52999 * 115.55344 * 39.06735 * 12 11 10 14 14 N 1.46501 * 109.46831 * 64.39785 * 13 12 11 15 15 C 1.36939 * 120.00033 * 185.04854 * 14 13 12 16 16 H 1.07998 * 120.00048 * 4.98140 * 15 14 13 17 17 C 1.38812 * 120.00000 * 184.97330 * 15 14 13 18 18 N 1.31623 * 120.00027 * 184.62112 * 17 15 14 19 19 Si 1.86797 * 120.00090 * 4.62803 * 17 15 14 20 20 H 1.48504 * 109.46992 * 94.06597 * 19 17 15 21 21 H 1.48500 * 109.47194 * 214.06244 * 19 17 15 22 22 H 1.48494 * 109.47162 * 334.06435 * 19 17 15 23 23 C 1.53000 * 117.49778 * 253.35882 * 12 11 10 24 24 C 1.52992 * 59.99956 * 252.51154 * 23 12 11 25 25 H 1.08997 * 109.46525 * 262.73339 * 1 2 3 26 26 H 1.08996 * 109.46866 * 22.73315 * 1 2 3 27 27 H 1.09002 * 109.47146 * 142.73869 * 1 2 3 28 28 H 1.07999 * 125.56242 * 359.94234 * 3 2 1 29 29 H 1.07999 * 126.06839 * 179.97438 * 4 3 2 30 30 H 1.07996 * 126.45740 * 180.26507 * 5 4 3 31 31 H 0.97002 * 119.99439 * 4.73467 * 9 7 6 32 32 H 1.09000 * 109.47303 * 295.02197 * 10 9 7 33 33 H 1.08995 * 109.47474 * 55.02463 * 10 9 7 34 34 H 1.08995 * 109.46726 * 303.54821 * 11 10 9 35 35 H 1.09003 * 109.47017 * 63.54739 * 11 10 9 36 36 H 1.08992 * 109.47692 * 184.39610 * 13 12 11 37 37 H 1.09000 * 109.46802 * 304.40346 * 13 12 11 38 38 H 0.96997 * 120.00068 * 5.05116 * 14 13 12 39 39 H 0.96994 * 120.00417 * 179.97438 * 18 17 15 40 40 H 1.08993 * 117.50201 * 0.02562 * 23 12 11 41 41 H 1.09001 * 117.50074 * 145.02226 * 23 12 11 42 42 H 1.09001 * 117.50071 * 252.50929 * 24 23 12 43 43 H 1.09006 * 117.49865 * 107.48989 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5781 -0.6888 0.0004 6 6 2.2679 -1.1182 0.0005 7 6 1.8124 -2.5125 0.0003 8 8 2.6187 -3.4159 -0.1214 9 7 0.5011 -2.7931 0.1348 10 6 0.0569 -4.1852 0.2388 11 6 -1.4492 -4.2213 0.5062 12 6 -1.8977 -5.6708 0.7026 13 6 -0.9333 -6.5588 1.4915 14 7 -0.8233 -6.0606 2.8648 15 6 0.0661 -6.6359 3.7328 16 1 0.7426 -7.4020 3.3837 17 6 0.0982 -6.2343 5.0611 18 7 1.0125 -6.7204 5.8737 19 14 -1.1561 -5.0040 5.6955 20 1 -2.3052 -5.7315 6.2918 21 1 -0.5260 -4.1425 6.7281 22 1 -1.6341 -4.1600 4.5712 23 6 -2.6943 -6.3234 -0.4289 24 6 -3.3959 -5.9299 0.8725 25 1 -0.3632 -0.1300 1.0194 26 1 -0.3633 0.9478 -0.3971 27 1 -0.3633 -0.8179 -0.6222 28 1 1.9082 2.1236 -0.0009 29 1 4.4133 1.3611 0.0003 30 1 4.4584 -1.3144 0.0047 31 1 -0.1485 -2.0732 0.1628 32 1 0.2728 -4.7061 -0.6940 33 1 0.5832 -4.6743 1.0584 34 1 -1.6724 -3.6469 1.4052 35 1 -1.9793 -3.7888 -0.3424 36 1 -1.3097 -7.5816 1.5052 37 1 0.0484 -6.5392 1.0182 38 1 -1.3806 -5.3233 3.1594 39 1 1.0352 -6.4395 6.8018 40 1 -2.8986 -5.7202 -1.3134 41 1 -2.5314 -7.3856 -0.6116 42 1 -3.6946 -6.7332 1.5460 43 1 -4.0622 -5.0676 0.8443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163464417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:11 Heat of formation + Delta-G solvation = 62.247228 kcal Electronic energy + Delta-G solvation = -23304.453479 eV Core-core repulsion = 19966.289512 eV Total energy + Delta-G solvation = -3338.163967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.50933 -39.17072 -38.26373 -35.09003 -34.05944 -33.04740 -31.15593 -30.55925 -28.89854 -26.92817 -26.24752 -24.03855 -22.55669 -21.86930 -21.76314 -20.61314 -20.13422 -18.79497 -17.87911 -17.31503 -16.03435 -15.94490 -15.67966 -15.20503 -15.03479 -14.52042 -14.47325 -14.01035 -13.68388 -13.56270 -13.23372 -12.90762 -12.63716 -12.56643 -12.51904 -12.39805 -12.22502 -11.87027 -11.56933 -11.44937 -11.15533 -10.91257 -10.75488 -10.18516 -9.97754 -9.85882 -9.60296 -9.47802 -9.00922 -8.87563 -8.85322 -8.29847 -7.17939 -5.73127 -3.08034 1.43301 2.55061 2.66528 3.18039 3.34448 3.39743 3.45005 3.47926 3.90764 4.26933 4.53229 4.60841 4.70337 4.81895 4.84660 4.91342 5.00346 5.03007 5.19314 5.31945 5.37539 5.43700 5.54364 5.61129 5.67527 5.75795 5.87245 6.01517 6.04800 6.08307 6.19569 6.25073 6.30368 6.37809 6.45511 6.64516 6.68861 6.73109 6.84733 7.00966 7.52708 8.05191 8.27908 8.46293 9.26139 9.97797 10.18771 11.45483 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.004725 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.047969 B = 5924.242245 C = 6987.852581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.434 5.434 3 C 0.013 3.987 4 C -0.210 4.210 5 C -0.109 4.109 6 C -0.053 4.053 7 C 0.585 3.415 8 O -0.522 6.522 9 N -0.737 5.737 10 C 0.114 3.886 11 C -0.086 4.086 12 C -0.127 4.127 13 C 0.188 3.812 14 N -0.751 5.751 15 C -0.241 4.241 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.886 3.114 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.280 1.280 23 C -0.171 4.171 24 C -0.170 4.170 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.167 0.833 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.390 0.610 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.025 0.975 37 H 0.039 0.961 38 H 0.362 0.638 39 H 0.259 0.741 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 16.182 -15.937 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.110 5.110 3 C -0.121 4.121 4 C -0.235 4.235 5 C -0.136 4.136 6 C -0.164 4.164 7 C 0.372 3.628 8 O -0.397 6.397 9 N -0.393 5.393 10 C -0.008 4.008 11 C -0.123 4.123 12 C -0.128 4.128 13 C 0.061 3.939 14 N -0.397 5.397 15 C -0.371 4.371 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.581 5.581 19 Si 0.718 3.282 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.207 1.207 23 C -0.208 4.208 24 C -0.207 4.207 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.185 0.815 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.196 0.804 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.825 15.288 -15.908 22.819 hybrid contribution -1.296 1.350 0.703 1.999 sum -7.121 16.637 -15.205 23.637 Atomic orbital electron populations 1.22345 0.77460 1.04870 1.04063 1.44005 1.06046 1.05910 1.55066 1.21964 0.90751 0.91311 1.08049 1.20873 0.96027 0.95009 1.11555 1.21347 0.94794 0.94851 1.02574 1.20603 0.91251 0.86221 1.18346 1.17041 0.82374 0.86532 0.76839 1.90870 1.53597 1.46003 1.49251 1.46486 1.07457 1.09891 1.75508 1.21588 0.94725 0.81230 1.03303 1.21190 0.94649 0.95224 1.01264 1.21645 0.93697 0.95540 1.01934 1.20230 0.95164 0.93617 0.84878 1.42706 1.48035 1.40543 1.08452 1.19067 1.11018 1.17449 0.89584 0.89239 1.24674 0.98600 0.99661 0.96125 1.69709 1.35592 1.47446 1.05308 0.86513 0.81910 0.81581 0.78245 1.21234 1.21896 1.20697 1.23027 1.04315 1.01340 0.92160 1.22966 0.94378 1.03321 1.00066 0.89738 0.88524 0.89513 0.81539 0.83905 0.83364 0.77092 0.91605 0.88478 0.91136 0.92042 0.95688 0.94328 0.80435 0.93126 0.89169 0.88673 0.88407 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 9.55 59.85 0.57 0.92 16 2 N -0.43 -4.56 3.16 -120.23 -0.38 -4.94 16 3 C 0.01 0.12 11.36 -16.91 -0.19 -0.07 16 4 C -0.21 -2.27 10.81 -39.98 -0.43 -2.70 16 5 C -0.11 -1.50 10.66 -39.12 -0.42 -1.92 16 6 C -0.05 -0.75 6.88 -81.98 -0.56 -1.32 16 7 C 0.59 9.81 7.77 -12.85 -0.10 9.71 16 8 O -0.52 -10.87 16.90 5.19 0.09 -10.78 16 9 N -0.74 -10.36 5.41 -61.62 -0.33 -10.69 16 10 C 0.11 1.77 4.95 -4.04 -0.02 1.75 16 11 C -0.09 -1.14 5.34 -26.73 -0.14 -1.28 16 12 C -0.13 -1.88 1.85 -154.51 -0.29 -2.17 16 13 C 0.19 3.65 5.26 -4.04 -0.02 3.62 16 14 N -0.75 -17.80 5.18 -59.91 -0.31 -18.11 16 15 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 16 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 17 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -29.92 13.97 55.49 0.78 -29.14 16 19 Si 0.89 22.45 28.00 -169.99 -4.76 17.69 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 22 H -0.28 -6.55 6.17 56.52 0.35 -6.20 16 23 C -0.17 -2.05 9.87 -26.73 -0.26 -2.32 16 24 C -0.17 -2.24 9.97 -26.74 -0.27 -2.51 16 25 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 26 H 0.10 0.34 8.11 -51.93 -0.42 -0.08 16 27 H 0.09 0.53 5.98 -51.93 -0.31 0.22 16 28 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.15 2.03 8.06 -52.49 -0.42 1.60 16 31 H 0.39 4.14 4.13 -40.82 -0.17 3.97 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.93 6.47 -51.93 -0.34 1.60 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.64 7.94 -51.93 -0.41 0.23 16 36 H 0.03 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.04 0.79 6.65 -51.93 -0.35 0.44 16 38 H 0.36 8.40 5.39 -40.82 -0.22 8.18 16 39 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 40 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -36.21 353.44 -8.45 -44.66 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.47 Total: 11.30 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -2.39 Total: -5.31 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.25 Total: -62.89 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.76 Total: 17.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.21 -8.45 -44.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163464417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.904 kcal (2) G-P(sol) polarization free energy of solvation -36.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds