Wall clock time and date at job start Tue Mar 31 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35533 * 125.67654 * 2 1 4 4 C 1.35452 * 108.86950 * 179.97438 * 3 2 1 5 5 C 1.39836 * 107.86767 * 0.02562 * 4 3 2 6 6 C 1.37655 * 125.67503 * 179.97438 * 2 1 3 7 7 C 1.46674 * 126.23465 * 0.04090 * 6 2 1 8 8 O 1.21700 * 119.99773 * 173.34198 * 7 6 2 9 9 N 1.34777 * 120.00246 * 353.34217 * 7 6 2 10 10 C 1.46494 * 119.99890 * 184.73162 * 9 7 6 11 11 C 1.53003 * 109.46993 * 175.02900 * 10 9 7 12 12 C 1.52999 * 109.47061 * 183.54997 * 11 10 9 13 13 C 1.52999 * 115.55344 * 39.06735 * 12 11 10 14 14 N 1.46501 * 109.46831 * 64.39785 * 13 12 11 15 15 C 1.36939 * 120.00033 * 185.04854 * 14 13 12 16 16 H 1.07998 * 120.00048 * 4.98140 * 15 14 13 17 17 C 1.38812 * 120.00000 * 184.97330 * 15 14 13 18 18 N 1.31623 * 120.00027 * 184.62112 * 17 15 14 19 19 Si 1.86797 * 120.00090 * 4.62803 * 17 15 14 20 20 H 1.48504 * 109.46992 * 94.06597 * 19 17 15 21 21 H 1.48500 * 109.47194 * 214.06244 * 19 17 15 22 22 H 1.48494 * 109.47162 * 334.06435 * 19 17 15 23 23 C 1.53000 * 117.49778 * 253.35882 * 12 11 10 24 24 C 1.52992 * 59.99956 * 252.51154 * 23 12 11 25 25 H 1.08997 * 109.46525 * 262.73339 * 1 2 3 26 26 H 1.08996 * 109.46866 * 22.73315 * 1 2 3 27 27 H 1.09002 * 109.47146 * 142.73869 * 1 2 3 28 28 H 1.07999 * 125.56242 * 359.94234 * 3 2 1 29 29 H 1.07999 * 126.06839 * 179.97438 * 4 3 2 30 30 H 1.07996 * 126.45740 * 180.26507 * 5 4 3 31 31 H 0.97002 * 119.99439 * 4.73467 * 9 7 6 32 32 H 1.09000 * 109.47303 * 295.02197 * 10 9 7 33 33 H 1.08995 * 109.47474 * 55.02463 * 10 9 7 34 34 H 1.08995 * 109.46726 * 303.54821 * 11 10 9 35 35 H 1.09003 * 109.47017 * 63.54739 * 11 10 9 36 36 H 1.08992 * 109.47692 * 184.39610 * 13 12 11 37 37 H 1.09000 * 109.46802 * 304.40346 * 13 12 11 38 38 H 0.96997 * 120.00068 * 5.05116 * 14 13 12 39 39 H 0.96994 * 120.00417 * 179.97438 * 18 17 15 40 40 H 1.08993 * 117.50201 * 0.02562 * 23 12 11 41 41 H 1.09001 * 117.50074 * 145.02226 * 23 12 11 42 42 H 1.09001 * 117.50071 * 252.50929 * 24 23 12 43 43 H 1.09006 * 117.49865 * 107.48989 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5781 -0.6888 0.0004 6 6 2.2679 -1.1182 0.0005 7 6 1.8124 -2.5125 0.0003 8 8 2.6187 -3.4159 -0.1214 9 7 0.5011 -2.7931 0.1348 10 6 0.0569 -4.1852 0.2388 11 6 -1.4492 -4.2213 0.5062 12 6 -1.8977 -5.6708 0.7026 13 6 -0.9333 -6.5588 1.4915 14 7 -0.8233 -6.0606 2.8648 15 6 0.0661 -6.6359 3.7328 16 1 0.7426 -7.4020 3.3837 17 6 0.0982 -6.2343 5.0611 18 7 1.0125 -6.7204 5.8737 19 14 -1.1561 -5.0040 5.6955 20 1 -2.3052 -5.7315 6.2918 21 1 -0.5260 -4.1425 6.7281 22 1 -1.6341 -4.1600 4.5712 23 6 -2.6943 -6.3234 -0.4289 24 6 -3.3959 -5.9299 0.8725 25 1 -0.3632 -0.1300 1.0194 26 1 -0.3633 0.9478 -0.3971 27 1 -0.3633 -0.8179 -0.6222 28 1 1.9082 2.1236 -0.0009 29 1 4.4133 1.3611 0.0003 30 1 4.4584 -1.3144 0.0047 31 1 -0.1485 -2.0732 0.1628 32 1 0.2728 -4.7061 -0.6940 33 1 0.5832 -4.6743 1.0584 34 1 -1.6724 -3.6469 1.4052 35 1 -1.9793 -3.7888 -0.3424 36 1 -1.3097 -7.5816 1.5052 37 1 0.0484 -6.5392 1.0182 38 1 -1.3806 -5.3233 3.1594 39 1 1.0352 -6.4395 6.8018 40 1 -2.8986 -5.7202 -1.3134 41 1 -2.5314 -7.3856 -0.6116 42 1 -3.6946 -6.7332 1.5460 43 1 -4.0622 -5.0676 0.8443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163464417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:10 Heat of formation + Delta-G solvation = 36.500109 kcal Electronic energy + Delta-G solvation = -23305.569958 eV Core-core repulsion = 19966.289512 eV Total energy + Delta-G solvation = -3339.280446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.40475 -40.37877 -39.50190 -36.34294 -35.98121 -33.84103 -33.25283 -31.75031 -29.86728 -28.05869 -27.57935 -25.15995 -24.29644 -23.18050 -22.87853 -21.46267 -21.22220 -20.35431 -19.24382 -18.64605 -17.27466 -16.96271 -16.71996 -16.60804 -16.36882 -16.05052 -15.53024 -15.25396 -15.18234 -14.75044 -14.51037 -14.31516 -14.10238 -13.69002 -13.47245 -13.37632 -13.27835 -13.12596 -12.89386 -12.80937 -12.61313 -12.23938 -12.20375 -11.94028 -11.85052 -11.35318 -11.10442 -10.96244 -10.60047 -10.29006 -9.71778 -9.29606 -9.20388 -8.05066 -5.38138 0.40717 1.30075 1.38279 1.44743 1.79870 1.80119 2.05902 2.32661 2.45521 2.83177 3.25217 3.61141 3.68940 3.71285 3.82976 3.91790 4.03507 4.07874 4.19053 4.29047 4.37735 4.41915 4.48179 4.55941 4.57596 4.59207 4.85190 4.92302 4.94717 5.08075 5.09203 5.11260 5.19201 5.23035 5.27524 5.34641 5.35393 5.73171 5.75235 5.89625 6.19084 6.30297 6.43991 7.06588 7.07749 7.82118 8.04960 9.17232 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.004725 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.047969 B = 5924.242245 C = 6987.852581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.428 5.428 3 C 0.042 3.958 4 C -0.226 4.226 5 C -0.133 4.133 6 C -0.092 4.092 7 C 0.577 3.423 8 O -0.583 6.583 9 N -0.720 5.720 10 C 0.119 3.881 11 C -0.073 4.073 12 C -0.151 4.151 13 C 0.187 3.813 14 N -0.747 5.747 15 C -0.236 4.236 16 H 0.046 0.954 17 C -0.067 4.067 18 N -0.986 5.986 19 Si 0.962 3.038 20 H -0.277 1.277 21 H -0.297 1.297 22 H -0.246 1.246 23 C -0.147 4.147 24 C -0.162 4.162 25 H 0.091 0.909 26 H 0.138 0.862 27 H 0.089 0.911 28 H 0.217 0.783 29 H 0.164 0.836 30 H 0.129 0.871 31 H 0.409 0.591 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.369 0.631 39 H 0.258 0.742 40 H 0.122 0.878 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 20.298 -17.499 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.103 5.103 3 C -0.094 4.094 4 C -0.249 4.249 5 C -0.161 4.161 6 C -0.203 4.203 7 C 0.367 3.633 8 O -0.463 6.463 9 N -0.377 5.377 10 C -0.004 4.004 11 C -0.110 4.110 12 C -0.152 4.152 13 C 0.061 3.939 14 N -0.393 5.393 15 C -0.367 4.367 16 H 0.064 0.936 17 C -0.258 4.258 18 N -0.637 5.637 19 Si 0.789 3.211 20 H -0.203 1.203 21 H -0.224 1.224 22 H -0.170 1.170 23 C -0.184 4.184 24 C -0.199 4.199 25 H 0.110 0.890 26 H 0.156 0.844 27 H 0.107 0.893 28 H 0.234 0.766 29 H 0.182 0.818 30 H 0.147 0.853 31 H 0.252 0.748 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.203 0.797 39 H 0.066 0.934 40 H 0.141 0.859 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.918 19.426 -17.523 27.979 hybrid contribution 0.045 0.036 1.115 1.117 sum -9.872 19.463 -16.408 27.303 Atomic orbital electron populations 1.22734 0.74872 1.07334 1.04954 1.44257 1.07616 1.04821 1.53626 1.22758 0.89920 0.92731 1.03994 1.21193 0.98053 0.93551 1.12152 1.21522 0.94516 0.96712 1.03329 1.20250 0.92196 0.86102 1.21783 1.17532 0.82642 0.87300 0.75862 1.90822 1.55178 1.47994 1.52289 1.46348 1.07119 1.09954 1.74308 1.21381 0.96276 0.81654 1.01096 1.21147 0.92524 0.94359 1.02980 1.21453 0.93861 0.95804 1.04068 1.20273 0.95856 0.94505 0.83308 1.42595 1.46906 1.40423 1.09407 1.19014 1.10821 1.16218 0.90631 0.93599 1.25597 1.01190 1.02712 0.96287 1.69920 1.38180 1.49918 1.05659 0.85293 0.78721 0.78932 0.78141 1.20300 1.22391 1.17033 1.23154 1.01195 1.01597 0.92472 1.23054 0.92731 1.03872 1.00251 0.89013 0.84389 0.89294 0.76594 0.81812 0.85290 0.74785 0.91908 0.93796 0.91349 0.87542 0.96443 0.96373 0.79706 0.93363 0.85943 0.88944 0.89878 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 9.55 127.77 1.22 1.57 16 2 N -0.43 -7.78 3.16 -534.30 -1.69 -9.47 16 3 C 0.04 0.61 11.36 83.48 0.95 1.56 16 4 C -0.23 -4.50 10.81 22.01 0.24 -4.26 16 5 C -0.13 -3.81 10.66 22.57 0.24 -3.57 16 6 C -0.09 -2.64 6.88 40.35 0.28 -2.36 16 7 C 0.58 20.24 7.77 86.45 0.67 20.91 16 8 O -0.58 -26.44 16.90 -4.35 -0.07 -26.51 16 9 N -0.72 -19.97 5.41 -467.09 -2.53 -22.49 16 10 C 0.12 3.74 4.95 86.38 0.43 4.16 16 11 C -0.07 -1.72 5.34 30.60 0.16 -1.55 16 12 C -0.15 -4.14 1.85 -52.18 -0.10 -4.24 16 13 C 0.19 7.43 5.26 86.38 0.45 7.88 16 14 N -0.75 -36.01 5.18 -343.46 -1.78 -37.79 16 15 C -0.24 -14.22 10.47 84.03 0.88 -13.34 16 16 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 17 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 18 N -0.99 -66.10 13.97 21.65 0.30 -65.80 16 19 Si 0.96 46.55 28.00 68.60 1.92 48.47 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 22 H -0.25 -10.35 6.17 99.48 0.61 -9.73 16 23 C -0.15 -2.98 9.87 30.59 0.30 -2.68 16 24 C -0.16 -3.65 9.97 30.59 0.30 -3.34 16 25 H 0.09 0.72 8.11 -2.39 -0.02 0.70 16 26 H 0.14 0.10 8.11 -2.39 -0.02 0.08 16 27 H 0.09 0.73 5.98 -2.39 -0.01 0.72 16 28 H 0.22 0.96 8.06 -2.91 -0.02 0.93 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.41 7.74 4.13 -92.71 -0.38 7.36 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.86 6.47 -2.39 -0.02 1.84 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 1.62 7.94 -2.39 -0.02 1.60 16 36 H 0.02 0.72 8.10 -2.39 -0.02 0.70 16 37 H 0.02 0.80 6.65 -2.39 -0.02 0.78 16 38 H 0.37 16.64 5.39 -92.71 -0.50 16.14 16 39 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 40 H 0.12 1.78 8.08 -2.39 -0.02 1.76 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -87.82 353.44 2.69 -85.13 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.04 Total: 31.35 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 6.50 Total: -2.89 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -5.69 Total: -135.55 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.92 Total: 48.47 kcal Total: -87.82 2.69 -85.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163464417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.628 kcal (2) G-P(sol) polarization free energy of solvation -87.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds