Wall clock time and date at job start Tue Mar 31 2020 07:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36458 * 124.84928 * 2 1 4 4 C 1.34482 * 108.85507 * 180.30306 * 3 2 1 5 5 C 1.46689 * 106.33457 * 359.73144 * 4 3 2 6 6 C 1.47259 * 126.94157 * 180.02562 * 5 4 3 7 7 O 1.21631 * 119.99963 * 179.97438 * 6 5 4 8 8 N 1.34772 * 120.00251 * 359.97438 * 6 5 4 9 9 C 1.46504 * 120.00249 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47029 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46733 * 175.45565 * 10 9 8 12 12 C 1.53003 * 115.55047 * 279.32165 * 11 10 9 13 13 N 1.46504 * 109.47107 * 294.95358 * 12 11 10 14 14 C 1.36931 * 119.99931 * 174.37039 * 13 12 11 15 15 H 1.08001 * 120.00102 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00028 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99929 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00054 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47109 * 89.99681 * 18 16 14 20 20 H 1.48509 * 109.46832 * 209.99884 * 18 16 14 21 21 H 1.48495 * 109.46966 * 329.99541 * 18 16 14 22 22 C 1.52999 * 117.49879 * 133.61793 * 11 10 9 23 23 C 1.52998 * 117.49990 * 64.99449 * 11 10 9 24 24 C 1.34654 * 124.85726 * 179.83160 * 2 1 3 25 25 H 1.08995 * 109.47739 * 270.16169 * 1 2 3 26 26 H 1.09000 * 109.47582 * 30.16840 * 1 2 3 27 27 H 1.09003 * 109.47080 * 150.16002 * 1 2 3 28 28 H 1.08002 * 125.57016 * 0.02562 * 3 2 1 29 29 H 1.08002 * 126.83354 * 179.73526 * 4 3 2 30 30 H 0.97002 * 120.00209 * 359.97438 * 8 6 5 31 31 H 1.09003 * 109.46820 * 299.99815 * 9 8 6 32 32 H 1.08991 * 109.47048 * 59.99435 * 9 8 6 33 33 H 1.09002 * 109.47146 * 295.45266 * 10 9 8 34 34 H 1.08993 * 109.47259 * 55.45750 * 10 9 8 35 35 H 1.09000 * 109.47182 * 54.95113 * 12 11 10 36 36 H 1.08999 * 109.47242 * 174.95505 * 12 11 10 37 37 H 0.97002 * 120.00069 * 354.36964 * 13 12 11 38 38 H 0.96996 * 120.00043 * 180.02562 * 17 16 14 39 39 H 1.09005 * 117.49720 * 359.97438 * 22 11 10 40 40 H 1.09000 * 117.50203 * 145.02215 * 22 11 10 41 41 H 1.09000 * 117.50018 * 214.97524 * 23 11 10 42 42 H 1.09006 * 117.49889 * 359.97438 * 23 11 10 43 43 H 1.08004 * 125.79737 * 359.96927 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2447 1.1199 0.0000 4 6 3.5374 0.7493 -0.0067 5 6 3.5462 -0.7176 -0.0046 6 6 4.7284 -1.5956 -0.0094 7 8 4.5886 -2.8038 -0.0064 8 7 5.9653 -1.0604 -0.0172 9 6 7.1414 -1.9339 -0.0214 10 6 8.4108 -1.0799 -0.0307 11 6 9.6372 -1.9882 0.0792 12 6 9.9800 -2.4661 1.4917 13 7 10.3637 -1.3175 2.3162 14 6 10.6032 -1.4846 3.6540 15 1 10.5096 -2.4632 4.1013 16 6 10.9662 -0.3962 4.4354 17 7 11.0806 0.7963 3.8902 18 14 11.2936 -0.6243 6.2603 19 1 12.7297 -0.9383 6.4701 20 1 10.9490 0.6254 6.9849 21 1 10.4621 -1.7411 6.7765 22 6 10.8001 -1.7240 -0.8793 23 6 9.9088 -2.9516 -1.0779 24 6 2.2345 -1.1049 0.0032 25 1 -0.3634 0.0029 1.0276 26 1 -0.3634 0.8884 -0.5164 27 1 -0.3633 -0.8914 -0.5114 28 1 1.8827 2.1374 0.0004 29 1 4.3980 1.4019 -0.0125 30 1 6.0768 -0.0968 -0.0199 31 1 7.1314 -2.5610 0.8701 32 1 7.1220 -2.5650 -0.9098 33 1 8.4607 -0.5131 -0.9604 34 1 8.3918 -0.3915 0.8141 35 1 9.1102 -2.9544 1.9311 36 1 10.8086 -3.1728 1.4451 37 1 10.4481 -0.4386 1.9144 38 1 11.3346 1.5568 4.4361 39 1 10.6913 -0.9034 -1.5885 40 1 11.8097 -1.8906 -0.5038 41 1 10.3320 -3.9257 -0.8330 42 1 9.2135 -2.9387 -1.9173 43 1 1.8768 -2.1240 0.0067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164081156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:15 Heat of formation + Delta-G solvation = 43.906714 kcal Electronic energy + Delta-G solvation = -22389.015377 eV Core-core repulsion = 19050.056105 eV Total energy + Delta-G solvation = -3338.959272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34941 -39.09015 -38.05451 -34.58810 -33.84485 -33.02440 -30.71461 -29.96978 -29.21520 -26.90257 -25.85503 -23.70927 -22.70040 -22.18904 -21.52119 -20.27482 -19.74785 -18.53013 -17.82869 -16.98769 -15.82468 -15.70063 -15.60763 -15.29005 -14.83362 -14.41125 -14.28253 -14.06447 -13.39954 -13.28165 -13.27761 -13.00284 -12.78832 -12.64077 -12.48364 -12.20836 -12.12010 -11.74368 -11.34662 -11.04021 -10.88710 -10.79728 -10.50027 -10.09898 -9.84377 -9.74534 -9.56032 -9.24222 -8.90827 -8.79630 -8.70670 -8.43979 -6.83827 -5.70556 -2.97917 1.73759 2.28235 2.58703 3.47840 3.52956 3.54504 3.55240 3.70644 4.15229 4.38079 4.66833 4.70524 4.73326 4.80466 4.98669 5.09787 5.14153 5.22104 5.27456 5.32793 5.44109 5.62532 5.67800 5.74697 5.79485 5.87810 5.95754 5.99740 6.25907 6.30302 6.33177 6.52302 6.53961 6.57594 6.62600 6.72997 6.84780 6.85933 6.92882 7.01218 7.76337 7.81005 8.48806 8.52856 9.60334 10.19301 10.55253 11.52425 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.003339 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.201895 B = 8384.212800 C = 9728.050039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.020 4.020 4 C -0.167 4.167 5 C -0.231 4.231 6 C 0.589 3.411 7 O -0.559 6.559 8 N -0.722 5.722 9 C 0.127 3.873 10 C -0.091 4.091 11 C -0.118 4.118 12 C 0.187 3.813 13 N -0.727 5.727 14 C -0.235 4.235 15 H 0.069 0.931 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.165 4.165 23 C -0.178 4.178 24 C 0.071 3.929 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.166 0.834 29 H 0.147 0.853 30 H 0.400 0.600 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.016 0.984 37 H 0.385 0.615 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.204 0.614 -12.924 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.146 4.146 4 C -0.191 4.191 5 C -0.241 4.241 6 C 0.377 3.623 7 O -0.438 6.438 8 N -0.372 5.372 9 C 0.004 3.996 10 C -0.129 4.129 11 C -0.119 4.119 12 C 0.060 3.940 13 N -0.371 5.371 14 C -0.367 4.367 15 H 0.087 0.913 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.202 4.202 23 C -0.215 4.215 24 C -0.064 4.064 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.184 0.816 29 H 0.165 0.835 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.218 0.782 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.637 -0.297 -12.750 23.415 hybrid contribution 0.310 0.800 0.964 1.290 sum -19.327 0.503 -11.787 22.643 Atomic orbital electron populations 1.22104 0.76987 1.04565 1.03562 1.43613 1.06721 1.05969 1.56282 1.21742 0.90597 0.91243 1.11037 1.22098 0.96293 0.93289 1.07433 1.20407 0.92643 0.93390 1.17621 1.17352 0.82411 0.86966 0.75533 1.90756 1.86716 1.14768 1.51610 1.45806 1.05531 1.10546 1.75350 1.21319 0.83092 0.92919 1.02285 1.21251 0.91418 0.97452 1.02733 1.21565 0.96253 1.01102 0.92984 1.20186 0.96496 0.90846 0.86484 1.42290 1.82782 1.06195 1.05845 1.19243 1.38290 0.94224 0.84906 0.91291 1.24707 1.02836 0.95500 0.98010 1.69660 1.54941 0.98841 1.34859 0.86208 0.77907 0.76740 0.85486 1.21829 1.21837 1.20795 1.22962 0.96132 0.99082 1.02067 1.22971 1.03576 0.94943 1.00044 1.21772 0.89854 0.91707 1.03072 0.90659 0.89642 0.89639 0.81638 0.83538 0.76602 0.91089 0.91919 0.92020 0.89477 0.95502 0.96606 0.78154 0.93643 0.89356 0.88657 0.88994 0.89246 0.80886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.03 59.84 0.66 0.95 16 2 N -0.45 -3.85 3.09 -124.53 -0.38 -4.24 16 3 C -0.02 -0.18 11.34 -16.82 -0.19 -0.37 16 4 C -0.17 -1.80 10.56 -37.50 -0.40 -2.20 16 5 C -0.23 -3.05 6.29 -103.35 -0.65 -3.70 16 6 C 0.59 9.40 7.81 -12.60 -0.10 9.31 16 7 O -0.56 -10.74 16.91 5.25 0.09 -10.65 16 8 N -0.72 -10.45 5.55 -61.44 -0.34 -10.79 16 9 C 0.13 1.97 5.51 -4.04 -0.02 1.94 16 10 C -0.09 -1.40 5.24 -26.73 -0.14 -1.54 16 11 C -0.12 -1.97 1.52 -154.51 -0.23 -2.20 16 12 C 0.19 3.92 6.10 -4.04 -0.02 3.89 16 13 N -0.73 -18.60 5.30 -59.91 -0.32 -18.92 16 14 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 18 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.17 -2.52 9.90 -26.73 -0.26 -2.79 16 23 C -0.18 -2.49 9.57 -26.73 -0.26 -2.75 16 24 C 0.07 0.79 11.12 -16.85 -0.19 0.60 16 25 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.21 8.13 -51.93 -0.42 -0.21 16 27 H 0.08 0.25 8.13 -51.93 -0.42 -0.17 16 28 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.15 1.34 7.70 -52.49 -0.40 0.94 16 30 H 0.40 4.91 7.60 -40.82 -0.31 4.60 16 31 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 32 H 0.06 0.95 7.80 -51.93 -0.41 0.54 16 33 H 0.06 0.83 7.94 -51.93 -0.41 0.42 16 34 H 0.09 1.56 7.64 -51.93 -0.40 1.16 16 35 H 0.03 0.58 7.69 -51.93 -0.40 0.18 16 36 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 37 H 0.38 10.28 7.46 -40.82 -0.30 9.97 16 38 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.12 7.98 -51.93 -0.41 0.71 16 43 H 0.17 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -35.10 364.85 -8.59 -43.69 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.79 Total: 11.53 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -2.05 Total: -6.24 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.32 Total: -61.62 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.10 -8.59 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164081156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.600 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds