Wall clock time and date at job start Tue Mar 31 2020 07:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36458 * 124.84928 * 2 1 4 4 C 1.34482 * 108.85507 * 180.30306 * 3 2 1 5 5 C 1.46689 * 106.33457 * 359.73144 * 4 3 2 6 6 C 1.47259 * 126.94157 * 180.02562 * 5 4 3 7 7 O 1.21631 * 119.99963 * 179.97438 * 6 5 4 8 8 N 1.34772 * 120.00251 * 359.97438 * 6 5 4 9 9 C 1.46504 * 120.00249 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47029 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46733 * 175.45565 * 10 9 8 12 12 C 1.53003 * 115.55047 * 279.32165 * 11 10 9 13 13 N 1.46504 * 109.47107 * 294.95358 * 12 11 10 14 14 C 1.36931 * 119.99931 * 174.37039 * 13 12 11 15 15 H 1.08001 * 120.00102 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00028 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99929 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00054 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47109 * 89.99681 * 18 16 14 20 20 H 1.48509 * 109.46832 * 209.99884 * 18 16 14 21 21 H 1.48495 * 109.46966 * 329.99541 * 18 16 14 22 22 C 1.52999 * 117.49879 * 133.61793 * 11 10 9 23 23 C 1.52998 * 117.49990 * 64.99449 * 11 10 9 24 24 C 1.34654 * 124.85726 * 179.83160 * 2 1 3 25 25 H 1.08995 * 109.47739 * 270.16169 * 1 2 3 26 26 H 1.09000 * 109.47582 * 30.16840 * 1 2 3 27 27 H 1.09003 * 109.47080 * 150.16002 * 1 2 3 28 28 H 1.08002 * 125.57016 * 0.02562 * 3 2 1 29 29 H 1.08002 * 126.83354 * 179.73526 * 4 3 2 30 30 H 0.97002 * 120.00209 * 359.97438 * 8 6 5 31 31 H 1.09003 * 109.46820 * 299.99815 * 9 8 6 32 32 H 1.08991 * 109.47048 * 59.99435 * 9 8 6 33 33 H 1.09002 * 109.47146 * 295.45266 * 10 9 8 34 34 H 1.08993 * 109.47259 * 55.45750 * 10 9 8 35 35 H 1.09000 * 109.47182 * 54.95113 * 12 11 10 36 36 H 1.08999 * 109.47242 * 174.95505 * 12 11 10 37 37 H 0.97002 * 120.00069 * 354.36964 * 13 12 11 38 38 H 0.96996 * 120.00043 * 180.02562 * 17 16 14 39 39 H 1.09005 * 117.49720 * 359.97438 * 22 11 10 40 40 H 1.09000 * 117.50203 * 145.02215 * 22 11 10 41 41 H 1.09000 * 117.50018 * 214.97524 * 23 11 10 42 42 H 1.09006 * 117.49889 * 359.97438 * 23 11 10 43 43 H 1.08004 * 125.79737 * 359.96927 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2447 1.1199 0.0000 4 6 3.5374 0.7493 -0.0067 5 6 3.5462 -0.7176 -0.0046 6 6 4.7284 -1.5956 -0.0094 7 8 4.5886 -2.8038 -0.0064 8 7 5.9653 -1.0604 -0.0172 9 6 7.1414 -1.9339 -0.0214 10 6 8.4108 -1.0799 -0.0307 11 6 9.6372 -1.9882 0.0792 12 6 9.9800 -2.4661 1.4917 13 7 10.3637 -1.3175 2.3162 14 6 10.6032 -1.4846 3.6540 15 1 10.5096 -2.4632 4.1013 16 6 10.9662 -0.3962 4.4354 17 7 11.0806 0.7963 3.8902 18 14 11.2936 -0.6243 6.2603 19 1 12.7297 -0.9383 6.4701 20 1 10.9490 0.6254 6.9849 21 1 10.4621 -1.7411 6.7765 22 6 10.8001 -1.7240 -0.8793 23 6 9.9088 -2.9516 -1.0779 24 6 2.2345 -1.1049 0.0032 25 1 -0.3634 0.0029 1.0276 26 1 -0.3634 0.8884 -0.5164 27 1 -0.3633 -0.8914 -0.5114 28 1 1.8827 2.1374 0.0004 29 1 4.3980 1.4019 -0.0125 30 1 6.0768 -0.0968 -0.0199 31 1 7.1314 -2.5610 0.8701 32 1 7.1220 -2.5650 -0.9098 33 1 8.4607 -0.5131 -0.9604 34 1 8.3918 -0.3915 0.8141 35 1 9.1102 -2.9544 1.9311 36 1 10.8086 -3.1728 1.4451 37 1 10.4481 -0.4386 1.9144 38 1 11.3346 1.5568 4.4361 39 1 10.6913 -0.9034 -1.5885 40 1 11.8097 -1.8906 -0.5038 41 1 10.3320 -3.9257 -0.8330 42 1 9.2135 -2.9387 -1.9173 43 1 1.8768 -2.1240 0.0067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164081156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:15 Heat of formation + Delta-G solvation = 20.900623 kcal Electronic energy + Delta-G solvation = -22390.012996 eV Core-core repulsion = 19050.056105 eV Total energy + Delta-G solvation = -3339.956890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.11474 -40.31427 -39.39013 -36.05774 -35.65894 -33.70041 -32.76781 -31.15261 -30.03385 -27.90861 -27.38401 -24.88849 -24.58778 -23.35268 -22.69914 -21.08096 -20.78734 -19.87322 -19.05642 -18.69642 -17.06919 -16.79550 -16.58052 -16.51297 -16.21393 -15.94716 -15.50809 -15.16493 -14.96680 -14.74509 -14.37863 -14.13060 -13.91000 -13.81875 -13.28613 -13.16027 -13.07994 -13.02838 -12.88261 -12.78326 -12.53395 -12.25877 -12.13638 -11.91749 -11.82097 -11.09561 -11.00780 -10.87398 -10.54863 -10.10331 -9.50214 -9.27991 -8.96191 -7.93574 -5.21095 0.77468 1.46589 1.48141 1.53272 1.56663 1.93116 2.45459 2.55543 2.60297 2.92502 3.39077 3.83742 3.85900 3.96408 4.00724 4.02683 4.08899 4.11314 4.24655 4.36275 4.44392 4.47985 4.50962 4.60279 4.68078 4.75701 4.85367 4.95336 4.98780 5.02486 5.09304 5.13884 5.22140 5.29317 5.35755 5.39560 5.49548 5.52601 5.77206 6.07453 6.28879 6.36297 6.68029 7.34251 7.35873 8.11973 8.38458 9.29729 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.003339 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.201895 B = 8384.212800 C = 9728.050039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.009 4.009 4 C -0.188 4.188 5 C -0.269 4.269 6 C 0.582 3.418 7 O -0.602 6.602 8 N -0.716 5.716 9 C 0.136 3.864 10 C -0.075 4.075 11 C -0.140 4.140 12 C 0.188 3.812 13 N -0.735 5.735 14 C -0.246 4.246 15 H 0.069 0.931 16 C -0.072 4.072 17 N -0.965 5.965 18 Si 0.970 3.030 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.274 1.274 22 C -0.162 4.162 23 C -0.151 4.151 24 C 0.068 3.932 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.202 0.798 29 H 0.156 0.844 30 H 0.410 0.590 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.015 0.985 36 H 0.014 0.986 37 H 0.377 0.623 38 H 0.251 0.749 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.704 1.328 -13.867 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.135 4.135 4 C -0.211 4.211 5 C -0.279 4.279 6 C 0.373 3.627 7 O -0.486 6.486 8 N -0.366 5.366 9 C 0.012 3.988 10 C -0.113 4.113 11 C -0.141 4.141 12 C 0.061 3.939 13 N -0.377 5.377 14 C -0.378 4.378 15 H 0.087 0.913 16 C -0.264 4.264 17 N -0.616 5.616 18 Si 0.800 3.200 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.199 1.199 22 C -0.199 4.199 23 C -0.188 4.188 24 C -0.070 4.070 25 H 0.104 0.896 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.219 0.781 29 H 0.173 0.827 30 H 0.246 0.754 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.032 0.968 37 H 0.209 0.791 38 H 0.060 0.940 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.132 0.868 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -21.156 0.420 -13.707 25.212 hybrid contribution 0.698 0.553 1.233 1.521 sum -20.458 0.974 -12.474 23.981 Atomic orbital electron populations 1.22457 0.74136 1.06445 1.04856 1.43940 1.08422 1.05082 1.54330 1.22301 0.89952 0.92652 1.08641 1.22307 0.97907 0.92169 1.08726 1.20396 0.92391 0.94472 1.20644 1.17862 0.83393 0.86845 0.74595 1.90710 1.87350 1.16610 1.53917 1.45748 1.05060 1.11014 1.74824 1.21145 0.83636 0.92887 1.01099 1.21086 0.90738 0.96706 1.02792 1.21401 0.97742 1.03628 0.91321 1.20232 0.95575 0.89445 0.88611 1.42423 1.82727 1.07086 1.05499 1.19600 1.37534 0.94258 0.86428 0.91314 1.25495 1.03380 0.95317 1.02244 1.69804 1.56153 0.99419 1.36210 0.85187 0.77793 0.76667 0.80401 1.21335 1.21888 1.19909 1.23011 0.94900 1.00553 1.01459 1.23059 1.02660 0.94493 0.98618 1.21918 0.89736 0.92825 1.02488 0.89601 0.87250 0.88436 0.78085 0.82671 0.75374 0.94201 0.91128 0.89253 0.92369 0.96678 0.96831 0.79072 0.93972 0.87334 0.90045 0.88519 0.86834 0.80359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 11.03 127.77 1.41 1.73 16 2 N -0.44 -6.61 3.09 -547.91 -1.69 -8.30 16 3 C -0.01 -0.13 11.34 83.11 0.94 0.81 16 4 C -0.19 -3.87 10.56 23.62 0.25 -3.62 16 5 C -0.27 -7.16 6.29 -19.04 -0.12 -7.28 16 6 C 0.58 19.22 7.81 86.62 0.68 19.90 16 7 O -0.60 -24.16 16.91 -4.13 -0.07 -24.23 16 8 N -0.72 -21.19 5.55 -466.53 -2.59 -23.78 16 9 C 0.14 4.28 5.51 86.38 0.48 4.75 16 10 C -0.08 -2.31 5.24 30.59 0.16 -2.15 16 11 C -0.14 -4.61 1.52 -52.18 -0.08 -4.69 16 12 C 0.19 8.03 6.10 86.38 0.53 8.56 16 13 N -0.73 -38.54 5.30 -343.44 -1.82 -40.36 16 14 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 15 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 16 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 17 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 18 Si 0.97 47.35 29.55 68.60 2.03 49.38 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 21 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 22 C -0.16 -4.70 9.90 30.59 0.30 -4.39 16 23 C -0.15 -3.92 9.57 30.59 0.29 -3.63 16 24 C 0.07 1.47 11.12 83.92 0.93 2.40 16 25 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.11 0.10 8.13 -2.39 -0.02 0.08 16 27 H 0.10 0.31 8.13 -2.39 -0.02 0.29 16 28 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.16 2.72 7.70 -2.91 -0.02 2.70 16 30 H 0.41 10.21 7.60 -92.71 -0.70 9.50 16 31 H 0.04 1.49 7.69 -2.39 -0.02 1.48 16 32 H 0.07 2.11 7.80 -2.39 -0.02 2.09 16 33 H 0.09 2.24 7.94 -2.39 -0.02 2.22 16 34 H 0.06 2.13 7.64 -2.39 -0.02 2.11 16 35 H 0.02 0.68 7.69 -2.39 -0.02 0.67 16 36 H 0.01 0.60 8.09 -2.39 -0.02 0.58 16 37 H 0.38 20.70 7.46 -92.71 -0.69 20.01 16 38 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.11 2.71 8.08 -2.38 -0.02 2.69 16 40 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 42 H 0.11 2.46 7.98 -2.38 -0.02 2.44 16 43 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -77.65 364.85 2.83 -74.82 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.38 Total: 36.59 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 7.08 Total: -4.81 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -5.82 Total: -131.75 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.07 Total: -24.23 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -77.65 2.83 -74.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164081156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.722 kcal (2) G-P(sol) polarization free energy of solvation -77.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds