Wall clock time and date at job start Tue Mar 31 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46798 * 2 1 4 4 C 1.46500 * 119.99820 * 269.99808 * 3 2 1 5 5 C 1.53004 * 109.47184 * 263.85504 * 4 3 2 6 6 C 1.34774 * 120.00228 * 89.99794 * 3 2 1 7 7 O 1.21279 * 120.00244 * 4.39252 * 6 3 2 8 8 C 1.50698 * 119.99937 * 184.39169 * 6 3 2 9 9 H 1.08998 * 109.47337 * 308.90113 * 8 6 3 10 10 C 1.52997 * 109.47287 * 68.90432 * 8 6 3 11 11 N 1.46498 * 109.47053 * 188.90398 * 8 6 3 12 12 C 1.38372 * 119.99901 * 154.99928 * 11 8 6 13 13 C 1.39702 * 119.43241 * 0.02562 * 12 11 8 14 14 C 1.36560 * 119.49320 * 179.97438 * 13 12 11 15 15 C 1.41326 * 118.41121 * 0.25659 * 14 13 12 16 16 C 1.41198 * 120.57171 * 179.74468 * 15 14 13 17 17 H 1.07999 * 120.00198 * 327.37483 * 16 15 14 18 18 C 1.39871 * 119.99987 * 147.36902 * 16 15 14 19 19 N 1.30894 * 120.00229 * 164.62949 * 18 16 15 20 20 Si 1.86805 * 119.99729 * 344.62964 * 18 16 15 21 21 H 1.48493 * 109.47459 * 84.87501 * 20 18 16 22 22 H 1.48506 * 109.46916 * 204.87486 * 20 18 16 23 23 H 1.48502 * 109.47246 * 324.87077 * 20 18 16 24 24 C 1.40753 * 118.85498 * 359.47658 * 15 14 13 25 25 N 1.31490 * 120.36855 * 0.53175 * 24 15 14 26 26 H 1.08998 * 109.47526 * 60.00384 * 1 2 3 27 27 H 1.09005 * 109.46693 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47457 * 300.00217 * 1 2 3 29 29 H 1.08997 * 109.47166 * 240.00138 * 2 1 3 30 30 H 1.09002 * 109.47081 * 119.99798 * 2 1 3 31 31 H 1.09000 * 109.47313 * 23.85374 * 4 3 2 32 32 H 1.09002 * 109.47187 * 143.85445 * 4 3 2 33 33 H 1.08999 * 109.46988 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46890 * 300.00129 * 5 4 3 35 35 H 1.09002 * 109.47107 * 59.99892 * 5 4 3 36 36 H 1.08998 * 109.47310 * 65.44406 * 10 8 6 37 37 H 1.09000 * 109.47309 * 185.44457 * 10 8 6 38 38 H 1.09000 * 109.47054 * 305.44211 * 10 8 6 39 39 H 0.96996 * 120.00318 * 334.99752 * 11 8 6 40 40 H 1.08002 * 120.25370 * 359.97438 * 13 12 11 41 41 H 1.08006 * 120.79562 * 179.97438 * 14 13 12 42 42 H 0.97003 * 119.99874 * 179.97438 * 19 18 16 43 43 H 1.08006 * 119.81556 * 180.27194 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.7442 1.9603 -1.6332 6 6 2.2428 2.0167 1.1672 7 8 2.1174 1.4207 2.2160 8 6 2.6497 3.4677 1.1690 9 1 3.4937 3.6092 0.4940 10 6 1.4736 4.3278 0.7023 11 7 3.0371 3.8645 2.5250 12 6 3.9081 4.9229 2.7139 13 6 4.4105 5.6052 1.6031 14 6 5.2698 6.6503 1.7881 15 6 5.6260 7.0020 3.1097 16 6 6.5152 8.0715 3.3533 17 1 7.3073 8.2858 2.6512 18 6 6.3700 8.8534 4.5040 19 7 7.3451 9.6365 4.8904 20 14 4.7846 8.7801 5.4891 21 1 4.8448 7.6411 6.4399 22 1 4.6122 10.0469 6.2445 23 1 3.6363 8.5941 4.5660 24 6 5.0747 6.2716 4.1791 25 7 4.2511 5.2731 3.9474 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6599 1.6142 -2.0534 32 1 1.9910 3.1227 -1.1685 33 1 3.9257 2.4737 -2.5774 34 1 4.3467 2.4180 -0.8486 35 1 4.0156 0.9094 -1.7334 36 1 0.6641 4.2615 1.4291 37 1 1.7958 5.3650 0.6109 38 1 1.1231 3.9696 -0.2657 39 1 2.6830 3.3853 3.2904 40 1 4.1215 5.3083 0.6057 41 1 5.6711 7.1921 0.9444 42 1 7.2442 10.1790 5.6882 43 1 5.3329 6.5300 5.1955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164602595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:38 Heat of formation + Delta-G solvation = 4.561892 kcal Electronic energy + Delta-G solvation = -23463.131933 eV Core-core repulsion = 20122.466542 eV Total energy + Delta-G solvation = -3340.665391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.46309 -38.78406 -36.47374 -35.65703 -33.61632 -32.49432 -31.46456 -30.59485 -29.56642 -28.84756 -25.30051 -24.31847 -23.84402 -22.76275 -22.06032 -20.62176 -19.16410 -17.78283 -17.38645 -16.79189 -16.15546 -15.86739 -15.36398 -15.02408 -14.50444 -14.19896 -14.07118 -13.75576 -13.49012 -13.23159 -13.07831 -12.97940 -12.94996 -12.53117 -12.43920 -12.28736 -12.11656 -12.05838 -11.82646 -11.64689 -11.28037 -11.07679 -10.99241 -10.76215 -10.39078 -10.00470 -9.78973 -9.46013 -8.94083 -8.87780 -8.58824 -8.15283 -6.90081 -6.84495 -4.31305 2.48531 2.51209 2.65966 2.72594 3.18948 3.24990 3.34701 3.91962 4.02025 4.28481 4.59156 4.62542 4.80645 4.81941 4.98474 5.02804 5.08048 5.13533 5.20362 5.34680 5.43545 5.46956 5.52725 5.60723 5.67441 5.74497 5.81525 5.90216 5.93797 6.09491 6.18872 6.26520 6.34652 6.48950 6.91035 7.03582 7.11864 7.29936 7.31820 7.78848 7.98498 8.06675 8.33346 8.41351 8.64789 8.81660 9.47465 10.18550 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032296 B = 0.003570 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.775138 B = 7840.444021 C = 8268.668524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 N -0.614 5.614 4 C 0.090 3.910 5 C -0.176 4.176 6 C 0.515 3.485 7 O -0.530 6.530 8 C 0.148 3.852 9 H 0.099 0.901 10 C -0.171 4.171 11 N -0.726 5.726 12 C 0.285 3.715 13 C -0.191 4.191 14 C -0.133 4.133 15 C 0.011 3.989 16 C -0.447 4.447 17 H 0.090 0.910 18 C 0.083 3.917 19 N -0.819 5.819 20 Si 0.906 3.094 21 H -0.263 1.263 22 H -0.290 1.290 23 H -0.254 1.254 24 C 0.005 3.995 25 N -0.506 5.506 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.284 0.716 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.546 -13.380 -13.928 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.349 5.349 4 C -0.032 4.032 5 C -0.235 4.235 6 C 0.303 3.697 7 O -0.405 6.405 8 C 0.037 3.963 9 H 0.116 0.884 10 C -0.230 4.230 11 N -0.367 5.367 12 C 0.053 3.947 13 C -0.215 4.215 14 C -0.160 4.160 15 C 0.005 3.995 16 C -0.477 4.477 17 H 0.108 0.892 18 C -0.134 4.134 19 N -0.444 5.444 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.217 1.217 23 H -0.178 1.178 24 C -0.154 4.154 25 N -0.221 5.221 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.238 0.762 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.094 0.906 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.783 -13.936 -12.677 22.221 hybrid contribution -0.330 0.378 -0.068 0.506 sum -12.114 -13.558 -12.745 22.204 Atomic orbital electron populations 1.22134 0.95915 1.02140 1.02334 1.21408 0.94275 0.82393 1.03160 1.47984 1.66626 1.14247 1.06010 1.21913 0.96960 0.98962 0.85387 1.22272 0.96198 1.02634 1.02347 1.20925 0.76224 0.89266 0.83319 1.90677 1.50998 1.67680 1.31183 1.20472 0.98400 0.89717 0.87699 0.88375 1.22452 0.98201 1.01336 1.01005 1.43407 1.52412 1.36009 1.04833 1.17694 0.95830 0.91799 0.89406 1.20769 1.03865 1.00226 0.96649 1.21042 0.99460 0.98532 0.96957 1.18526 0.94058 0.95054 0.91838 1.19174 1.12140 1.10636 1.05765 0.89242 1.26029 0.97560 0.93806 0.96008 1.69692 1.31296 1.21261 1.22171 0.86490 0.82982 0.76921 0.80292 1.18880 1.21694 1.17784 1.22572 1.00101 0.93927 0.98787 1.66565 1.16012 1.17663 1.21848 0.92603 0.91663 0.92221 0.90664 0.89822 0.90024 0.89105 0.91066 0.91919 0.92280 0.91766 0.90532 0.91400 0.76154 0.87850 0.87036 0.90596 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.11 0.96 6.13 -4.04 -0.02 0.94 16 3 N -0.61 -6.17 2.49 -173.69 -0.43 -6.60 16 4 C 0.09 0.64 5.66 -4.04 -0.02 0.62 16 5 C -0.18 -1.27 10.07 37.16 0.37 -0.90 16 6 C 0.52 7.15 6.97 -10.99 -0.08 7.07 16 7 O -0.53 -9.29 15.38 5.56 0.09 -9.20 16 8 C 0.15 2.08 1.85 -69.09 -0.13 1.95 16 9 H 0.10 1.29 4.52 -51.93 -0.23 1.06 16 10 C -0.17 -2.01 9.03 37.16 0.34 -1.67 16 11 N -0.73 -13.45 5.14 -55.00 -0.28 -13.73 16 12 C 0.28 6.21 7.62 -155.13 -1.18 5.02 16 13 C -0.19 -3.88 8.76 -39.64 -0.35 -4.23 16 14 C -0.13 -2.99 9.88 -39.01 -0.39 -3.38 16 15 C 0.01 0.28 5.07 -106.65 -0.54 -0.26 16 16 C -0.45 -12.06 9.59 -37.85 -0.36 -12.42 16 17 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 18 C 0.08 2.19 5.43 -17.34 -0.09 2.10 16 19 N -0.82 -22.06 13.93 55.54 0.77 -21.29 16 20 Si 0.91 21.32 24.71 -169.99 -4.20 17.12 16 21 H -0.26 -6.10 6.24 56.52 0.35 -5.74 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.25 -6.20 7.11 56.52 0.40 -5.79 16 24 C 0.00 0.12 8.49 -16.75 -0.14 -0.02 16 25 N -0.51 -12.51 10.37 -11.79 -0.12 -12.63 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.08 0.89 7.37 -51.93 -0.38 0.51 16 31 H 0.08 0.41 8.03 -51.93 -0.42 -0.01 16 32 H 0.09 0.61 4.34 -51.93 -0.23 0.38 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.58 6.74 -51.93 -0.35 0.23 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.96 7.57 -51.93 -0.39 0.57 16 38 H 0.07 0.58 5.40 -51.93 -0.28 0.30 16 39 H 0.40 7.87 7.84 -40.82 -0.32 7.55 16 40 H 0.10 1.70 5.92 -52.49 -0.31 1.39 16 41 H 0.11 2.28 8.06 -52.48 -0.42 1.85 16 42 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 43 H 0.14 3.54 4.58 -52.48 -0.24 3.29 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -31.17 340.91 -7.40 -38.57 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.14 Total: 8.72 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.22 Total: -6.10 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.06 Total: -54.25 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.20 Total: 17.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.17 -7.40 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164602595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.129 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds