Wall clock time and date at job start Tue Mar 31 2020 06:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46798 * 2 1 4 4 C 1.46500 * 119.99820 * 269.99808 * 3 2 1 5 5 C 1.53004 * 109.47184 * 263.85504 * 4 3 2 6 6 C 1.34774 * 120.00228 * 89.99794 * 3 2 1 7 7 O 1.21279 * 120.00244 * 4.39252 * 6 3 2 8 8 C 1.50698 * 119.99937 * 184.39169 * 6 3 2 9 9 H 1.08998 * 109.47337 * 308.90113 * 8 6 3 10 10 C 1.52997 * 109.47287 * 68.90432 * 8 6 3 11 11 N 1.46498 * 109.47053 * 188.90398 * 8 6 3 12 12 C 1.38372 * 119.99901 * 154.99928 * 11 8 6 13 13 C 1.39702 * 119.43241 * 0.02562 * 12 11 8 14 14 C 1.36560 * 119.49320 * 179.97438 * 13 12 11 15 15 C 1.41326 * 118.41121 * 0.25659 * 14 13 12 16 16 C 1.41198 * 120.57171 * 179.74468 * 15 14 13 17 17 H 1.07999 * 120.00198 * 327.37483 * 16 15 14 18 18 C 1.39871 * 119.99987 * 147.36902 * 16 15 14 19 19 N 1.30894 * 120.00229 * 164.62949 * 18 16 15 20 20 Si 1.86805 * 119.99729 * 344.62964 * 18 16 15 21 21 H 1.48493 * 109.47459 * 84.87501 * 20 18 16 22 22 H 1.48506 * 109.46916 * 204.87486 * 20 18 16 23 23 H 1.48502 * 109.47246 * 324.87077 * 20 18 16 24 24 C 1.40753 * 118.85498 * 359.47658 * 15 14 13 25 25 N 1.31490 * 120.36855 * 0.53175 * 24 15 14 26 26 H 1.08998 * 109.47526 * 60.00384 * 1 2 3 27 27 H 1.09005 * 109.46693 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47457 * 300.00217 * 1 2 3 29 29 H 1.08997 * 109.47166 * 240.00138 * 2 1 3 30 30 H 1.09002 * 109.47081 * 119.99798 * 2 1 3 31 31 H 1.09000 * 109.47313 * 23.85374 * 4 3 2 32 32 H 1.09002 * 109.47187 * 143.85445 * 4 3 2 33 33 H 1.08999 * 109.46988 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46890 * 300.00129 * 5 4 3 35 35 H 1.09002 * 109.47107 * 59.99892 * 5 4 3 36 36 H 1.08998 * 109.47310 * 65.44406 * 10 8 6 37 37 H 1.09000 * 109.47309 * 185.44457 * 10 8 6 38 38 H 1.09000 * 109.47054 * 305.44211 * 10 8 6 39 39 H 0.96996 * 120.00318 * 334.99752 * 11 8 6 40 40 H 1.08002 * 120.25370 * 359.97438 * 13 12 11 41 41 H 1.08006 * 120.79562 * 179.97438 * 14 13 12 42 42 H 0.97003 * 119.99874 * 179.97438 * 19 18 16 43 43 H 1.08006 * 119.81556 * 180.27194 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.7442 1.9603 -1.6332 6 6 2.2428 2.0167 1.1672 7 8 2.1174 1.4207 2.2160 8 6 2.6497 3.4677 1.1690 9 1 3.4937 3.6092 0.4940 10 6 1.4736 4.3278 0.7023 11 7 3.0371 3.8645 2.5250 12 6 3.9081 4.9229 2.7139 13 6 4.4105 5.6052 1.6031 14 6 5.2698 6.6503 1.7881 15 6 5.6260 7.0020 3.1097 16 6 6.5152 8.0715 3.3533 17 1 7.3073 8.2858 2.6512 18 6 6.3700 8.8534 4.5040 19 7 7.3451 9.6365 4.8904 20 14 4.7846 8.7801 5.4891 21 1 4.8448 7.6411 6.4399 22 1 4.6122 10.0469 6.2445 23 1 3.6363 8.5941 4.5660 24 6 5.0747 6.2716 4.1791 25 7 4.2511 5.2731 3.9474 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6599 1.6142 -2.0534 32 1 1.9910 3.1227 -1.1685 33 1 3.9257 2.4737 -2.5774 34 1 4.3467 2.4180 -0.8486 35 1 4.0156 0.9094 -1.7334 36 1 0.6641 4.2615 1.4291 37 1 1.7958 5.3650 0.6109 38 1 1.1231 3.9696 -0.2657 39 1 2.6830 3.3853 3.2904 40 1 4.1215 5.3083 0.6057 41 1 5.6711 7.1921 0.9444 42 1 7.2442 10.1790 5.6882 43 1 5.3329 6.5300 5.1955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164602595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:37 Heat of formation + Delta-G solvation = -16.072232 kcal Electronic energy + Delta-G solvation = -23464.026695 eV Core-core repulsion = 20122.466542 eV Total energy + Delta-G solvation = -3341.560154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54005 -40.49715 -37.45363 -37.04996 -35.42623 -33.54597 -33.04459 -31.98527 -30.70480 -30.07113 -26.73912 -25.61276 -24.57916 -24.34414 -23.30318 -22.26526 -20.22996 -19.40640 -18.80524 -18.03855 -17.56588 -17.09251 -16.64979 -16.45336 -15.83667 -15.52698 -14.99218 -14.95099 -14.85986 -14.78190 -14.47461 -14.22615 -13.98431 -13.62434 -13.57358 -13.44600 -13.38831 -13.04780 -12.82019 -12.77981 -12.68873 -12.47034 -12.26982 -11.92901 -11.87990 -11.67749 -11.31438 -10.87841 -10.63248 -10.39674 -10.00716 -9.75188 -8.82570 -8.63536 -6.31247 0.65421 0.82838 1.28758 1.37271 1.44750 1.47365 1.80354 2.11123 2.53435 2.69083 3.35498 3.52428 3.86885 4.02019 4.10039 4.11101 4.14611 4.23000 4.33343 4.46285 4.48879 4.52888 4.54093 4.66376 4.72324 4.77080 4.81846 4.93075 4.99161 5.05477 5.10615 5.16984 5.25198 5.29198 5.39972 5.46345 5.51502 5.61212 5.94620 6.16149 6.26588 6.47807 6.55146 6.79719 6.90938 7.05492 7.65551 8.26866 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032296 B = 0.003570 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.775138 B = 7840.444021 C = 8268.668524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.603 5.603 4 C 0.084 3.916 5 C -0.175 4.175 6 C 0.511 3.489 7 O -0.578 6.578 8 C 0.142 3.858 9 H 0.114 0.886 10 C -0.165 4.165 11 N -0.725 5.725 12 C 0.300 3.700 13 C -0.183 4.183 14 C -0.124 4.124 15 C -0.013 4.013 16 C -0.474 4.474 17 H 0.065 0.935 18 C 0.051 3.949 19 N -0.857 5.857 20 Si 0.956 3.044 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.268 1.268 24 C -0.010 4.010 25 N -0.539 5.539 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.395 0.605 40 H 0.152 0.848 41 H 0.134 0.866 42 H 0.291 0.709 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.667 -14.869 -17.253 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.335 5.335 4 C -0.037 4.037 5 C -0.234 4.234 6 C 0.299 3.701 7 O -0.457 6.457 8 C 0.033 3.967 9 H 0.132 0.868 10 C -0.223 4.223 11 N -0.364 5.364 12 C 0.065 3.935 13 C -0.206 4.206 14 C -0.150 4.150 15 C -0.019 4.019 16 C -0.505 4.505 17 H 0.083 0.917 18 C -0.162 4.162 19 N -0.485 5.485 20 Si 0.781 3.219 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.192 1.192 24 C -0.166 4.166 25 N -0.255 5.255 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.231 0.769 40 H 0.170 0.830 41 H 0.152 0.848 42 H 0.101 0.899 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.915 -15.435 -16.060 26.264 hybrid contribution 0.195 0.539 0.717 0.918 sum -13.720 -14.897 -15.343 25.408 Atomic orbital electron populations 1.22078 0.94918 1.03039 1.01815 1.21577 0.95050 0.81576 1.03457 1.48083 1.64844 1.14657 1.05961 1.22222 0.97543 0.99468 0.84496 1.22268 0.95725 1.02757 1.02602 1.20908 0.76222 0.89124 0.83858 1.90666 1.53485 1.68468 1.33094 1.20820 0.99926 0.90584 0.85415 0.86828 1.22413 0.96644 1.00639 1.02623 1.43676 1.51138 1.34681 1.06872 1.18179 0.94530 0.91603 0.89172 1.21139 1.02301 0.98750 0.98429 1.21402 0.98698 0.98536 0.96407 1.18617 0.94782 0.95141 0.93348 1.19149 1.12863 1.12257 1.06266 0.91689 1.26527 0.99475 0.93502 0.96649 1.69715 1.32575 1.22833 1.23399 0.85726 0.79702 0.77402 0.79062 1.19030 1.19871 1.19227 1.22439 1.00994 0.94654 0.98552 1.66584 1.17181 1.18117 1.23617 0.90738 0.90196 0.94948 0.87449 0.92437 0.86774 0.88297 0.88941 0.94125 0.92309 0.92948 0.90796 0.87548 0.76929 0.83045 0.84817 0.89863 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 10.24 71.98 0.74 -1.29 16 2 C 0.11 1.55 6.13 86.38 0.53 2.08 16 3 N -0.60 -10.19 2.49 -821.82 -2.04 -12.23 16 4 C 0.08 0.77 5.66 86.38 0.49 1.26 16 5 C -0.18 -1.79 10.07 71.98 0.72 -1.07 16 6 C 0.51 13.19 6.97 87.66 0.61 13.81 16 7 O -0.58 -20.11 15.38 -3.03 -0.05 -20.16 16 8 C 0.14 3.57 1.85 44.24 0.08 3.65 16 9 H 0.11 2.52 4.52 -2.39 -0.01 2.51 16 10 C -0.16 -3.25 9.03 71.98 0.65 -2.60 16 11 N -0.73 -25.72 5.14 -327.91 -1.69 -27.40 16 12 C 0.30 12.61 7.62 133.31 1.02 13.63 16 13 C -0.18 -6.86 8.76 22.23 0.19 -6.67 16 14 C -0.12 -5.35 9.88 22.64 0.22 -5.13 16 15 C -0.01 -0.68 5.07 -21.18 -0.11 -0.79 16 16 C -0.47 -26.44 9.59 23.39 0.22 -26.22 16 17 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 18 C 0.05 2.81 5.43 85.23 0.46 3.27 16 19 N -0.86 -47.73 13.93 21.82 0.30 -47.43 16 20 Si 0.96 45.09 24.71 68.60 1.69 46.79 16 21 H -0.26 -12.36 6.24 99.48 0.62 -11.74 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 24 C -0.01 -0.54 8.49 85.36 0.72 0.18 16 25 N -0.54 -26.57 10.37 -191.20 -1.98 -28.55 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 0.91 8.07 -2.39 -0.02 0.89 16 30 H 0.06 1.17 7.37 -2.39 -0.02 1.16 16 31 H 0.11 0.42 8.03 -2.39 -0.02 0.40 16 32 H 0.10 0.76 4.34 -2.39 -0.01 0.75 16 33 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.04 0.60 6.74 -2.39 -0.02 0.59 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.54 7.57 -2.39 -0.02 1.52 16 38 H 0.11 1.27 5.40 -2.39 -0.01 1.26 16 39 H 0.40 15.33 7.84 -92.71 -0.73 14.60 16 40 H 0.15 4.20 5.92 -2.91 -0.02 4.18 16 41 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 42 H 0.29 14.70 8.30 -92.71 -0.77 13.93 16 43 H 0.13 6.71 4.58 -2.91 -0.01 6.69 16 Total: -1.00 -71.47 340.91 3.02 -68.45 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.22 Total: 26.44 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 6.56 Total: -5.90 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -5.41 Total: -115.62 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.69 Total: 46.79 kcal Total: -71.47 3.02 -68.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164602595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.376 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds