Wall clock time and date at job start Tue Mar 31 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47561 * 2 1 4 4 C 1.46500 * 120.00080 * 273.89760 * 3 2 1 5 5 C 1.53000 * 109.46961 * 263.84722 * 4 3 2 6 6 C 1.34779 * 120.00194 * 93.89107 * 3 2 1 7 7 O 1.21280 * 120.00016 * 4.29249 * 6 3 2 8 8 C 1.50695 * 120.00214 * 184.28990 * 6 3 2 9 9 H 1.09008 * 109.47192 * 308.99765 * 8 6 3 10 10 C 1.52997 * 109.47122 * 68.99883 * 8 6 3 11 11 N 1.46497 * 109.47318 * 189.00241 * 8 6 3 12 12 C 1.38094 * 119.99942 * 155.00151 * 11 8 6 13 13 N 1.32261 * 119.90640 * 0.02562 * 12 11 8 14 14 C 1.31973 * 121.86379 * 179.72664 * 13 12 11 15 15 C 1.38685 * 121.44806 * 0.55024 * 14 13 12 16 16 C 1.38007 * 119.62254 * 359.44277 * 15 14 13 17 17 C 1.41004 * 118.28651 * 0.27310 * 16 15 14 18 18 C 1.41013 * 120.70769 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00029 * 147.34921 * 18 17 16 20 20 C 1.39955 * 120.00005 * 327.34518 * 18 17 16 21 21 N 1.30869 * 119.99802 * 165.09958 * 20 18 17 22 22 Si 1.86795 * 119.99928 * 345.10471 * 20 18 17 23 23 H 1.48502 * 109.47650 * 84.88352 * 22 20 18 24 24 H 1.48506 * 109.46935 * 204.88211 * 22 20 18 25 25 H 1.48504 * 109.47368 * 324.87793 * 22 20 18 26 26 H 1.08993 * 109.47489 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47131 * 300.00619 * 1 2 3 28 28 H 1.09002 * 109.46975 * 60.00027 * 1 2 3 29 29 H 1.08993 * 109.47092 * 239.99321 * 2 1 3 30 30 H 1.09006 * 109.46265 * 119.99905 * 2 1 3 31 31 H 1.09001 * 109.47062 * 23.84336 * 4 3 2 32 32 H 1.08995 * 109.47404 * 143.84288 * 4 3 2 33 33 H 1.09001 * 109.46917 * 299.99703 * 5 4 3 34 34 H 1.09000 * 109.46972 * 59.99708 * 5 4 3 35 35 H 1.08999 * 109.46998 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47005 * 185.45617 * 10 8 6 37 37 H 1.09007 * 109.47288 * 305.45136 * 10 8 6 38 38 H 1.08996 * 109.47360 * 65.45164 * 10 8 6 39 39 H 0.97001 * 119.99810 * 334.99841 * 11 8 6 40 40 H 1.07996 * 119.27517 * 180.29325 * 14 13 12 41 41 H 1.07991 * 120.18818 * 179.71679 * 15 14 13 42 42 H 1.08003 * 120.85655 * 180.29820 * 16 15 14 43 43 H 0.97005 * 119.99802 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1814 2.1005 -1.2658 5 6 3.6367 1.9983 -1.7268 6 6 2.3178 1.9901 1.1645 7 8 2.2575 1.3709 2.2056 8 6 2.7275 3.4403 1.1730 9 1 3.5264 3.5964 0.4480 10 6 1.5257 4.3119 0.8031 11 7 3.2029 3.8057 2.5096 12 6 4.0850 4.8566 2.6653 13 7 4.4991 5.5324 1.6064 14 6 5.3373 6.5464 1.7111 15 6 5.8365 6.9485 2.9409 16 6 5.4440 6.2859 4.0861 17 6 4.5436 5.2082 3.9593 18 6 4.1085 4.4958 5.0957 19 1 3.1132 4.0776 5.1225 20 6 4.9665 4.3306 6.1890 21 7 4.4889 3.9364 7.3419 22 14 6.7934 4.6729 6.0025 23 1 7.0482 6.1225 6.2000 24 1 7.5488 3.8948 7.0171 25 1 7.2356 4.2733 4.6424 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8901 31 1 1.5295 1.6603 -2.0204 32 1 1.9177 3.1486 -1.1246 33 1 4.2886 2.4385 -0.9722 34 1 3.9003 0.9501 -1.8679 35 1 3.7578 2.5331 -2.6688 36 1 1.8438 5.3507 0.7144 37 1 1.1122 3.9761 -0.1480 38 1 0.7648 4.2299 1.5792 39 1 2.8979 3.3094 3.2853 40 1 5.6443 7.0720 0.8191 41 1 6.5249 7.7783 3.0026 42 1 5.8166 6.5854 5.0546 43 1 5.0836 3.8223 8.0998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164603228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:46 Heat of formation + Delta-G solvation = 1.203049 kcal Electronic energy + Delta-G solvation = -23975.511809 eV Core-core repulsion = 20634.700768 eV Total energy + Delta-G solvation = -3340.811041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.16742 -38.64284 -36.21735 -35.13766 -33.82891 -32.39625 -31.18588 -30.78220 -29.36037 -28.02372 -25.30195 -24.61495 -23.67926 -22.62954 -21.41926 -20.59838 -18.86787 -17.55109 -17.35768 -16.63201 -16.07001 -15.52154 -15.17716 -14.78652 -14.39295 -13.98557 -13.84641 -13.59881 -13.37325 -13.08821 -13.05523 -12.81132 -12.75328 -12.42271 -12.21236 -12.00361 -11.92743 -11.88545 -11.81351 -11.41899 -11.25128 -11.05741 -10.76483 -10.70571 -10.22414 -9.87918 -9.47844 -9.36761 -9.18959 -8.68691 -8.22493 -8.11992 -6.87991 -6.72538 -4.33055 2.57139 2.72944 2.81838 2.96917 3.13272 3.22918 3.34003 4.01219 4.25667 4.57108 4.64623 4.81909 5.01181 5.02628 5.21627 5.24137 5.31442 5.39374 5.50892 5.55307 5.61586 5.64804 5.70502 5.76086 5.87496 5.99570 6.04818 6.09695 6.15380 6.21520 6.42104 6.47418 6.55493 6.60816 6.84257 7.10959 7.33093 7.40494 7.61613 7.81598 8.11266 8.31672 8.37775 8.45183 8.74620 8.82359 9.55533 10.15133 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018373 B = 0.005004 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.576777 B = 5594.215132 C = 6470.218789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.616 5.616 4 C 0.093 3.907 5 C -0.174 4.174 6 C 0.511 3.489 7 O -0.528 6.528 8 C 0.147 3.853 9 H 0.105 0.895 10 C -0.161 4.161 11 N -0.708 5.708 12 C 0.328 3.672 13 N -0.530 5.530 14 C 0.004 3.996 15 C -0.172 4.172 16 C -0.204 4.204 17 C 0.018 3.982 18 C -0.441 4.441 19 H 0.091 0.909 20 C 0.084 3.916 21 N -0.812 5.812 22 Si 0.915 3.085 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.253 1.253 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.417 0.583 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 -4.002 -15.636 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.014 4.014 3 N -0.351 5.351 4 C -0.030 4.030 5 C -0.233 4.233 6 C 0.299 3.701 7 O -0.403 6.403 8 C 0.037 3.963 9 H 0.123 0.877 10 C -0.220 4.220 11 N -0.349 5.349 12 C 0.088 3.912 13 N -0.248 5.248 14 C -0.148 4.148 15 C -0.194 4.194 16 C -0.230 4.230 17 C 0.010 3.990 18 C -0.471 4.471 19 H 0.109 0.891 20 C -0.134 4.134 21 N -0.437 5.437 22 Si 0.742 3.258 23 H -0.193 1.193 24 H -0.220 1.220 25 H -0.177 1.177 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.257 0.743 40 H 0.141 0.859 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.579 -4.640 -15.780 17.074 hybrid contribution 1.039 0.212 1.112 1.537 sum -3.540 -4.429 -14.668 15.726 Atomic orbital electron populations 1.22133 0.96053 1.01994 1.02276 1.21384 0.94149 0.82719 1.03112 1.47980 1.66620 1.14119 1.06355 1.21862 0.97256 0.98576 0.85300 1.22250 0.96783 1.02261 1.01979 1.21156 0.76033 0.89789 0.83134 1.90695 1.51676 1.66370 1.31603 1.20428 0.97808 0.88813 0.89275 0.87729 1.22314 0.97497 1.01494 1.00719 1.43677 1.50017 1.34941 1.06264 1.18397 0.93895 0.89865 0.89032 1.66582 1.16093 1.09874 1.32275 1.21390 1.00194 0.97568 0.95619 1.21293 1.02615 1.01365 0.94151 1.21249 1.05867 0.98210 0.97658 1.18058 0.94945 0.93988 0.91965 1.19111 1.01695 1.29800 0.96531 0.89099 1.26056 1.01632 0.91920 0.93751 1.69683 1.38283 1.34792 1.00953 0.86331 0.81748 0.78413 0.79303 1.19312 1.21986 1.17660 0.91781 0.92212 0.92704 0.90993 0.89634 0.90349 0.89031 0.91737 0.92548 0.91335 0.90581 0.91934 0.92362 0.74326 0.85922 0.88261 0.86952 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.24 37.16 0.38 -1.21 16 2 C 0.11 1.19 6.17 -4.04 -0.02 1.17 16 3 N -0.62 -7.74 2.49 -173.69 -0.43 -8.17 16 4 C 0.09 0.87 5.68 -4.04 -0.02 0.85 16 5 C -0.17 -1.65 10.07 37.16 0.37 -1.28 16 6 C 0.51 8.61 6.97 -10.99 -0.08 8.53 16 7 O -0.53 -10.94 15.33 5.56 0.09 -10.86 16 8 C 0.15 2.55 2.18 -69.09 -0.15 2.40 16 9 H 0.11 1.80 5.63 -51.92 -0.29 1.51 16 10 C -0.16 -2.38 9.13 37.16 0.34 -2.04 16 11 N -0.71 -15.36 5.05 -54.62 -0.28 -15.63 16 12 C 0.33 7.81 7.49 -155.03 -1.16 6.65 16 13 N -0.53 -11.81 9.17 -11.86 -0.11 -11.92 16 14 C 0.00 0.08 11.17 -17.33 -0.19 -0.11 16 15 C -0.17 -3.74 10.08 -39.50 -0.40 -4.14 16 16 C -0.20 -4.98 7.40 -38.62 -0.29 -5.26 16 17 C 0.02 0.47 5.08 -106.47 -0.54 -0.08 16 18 C -0.44 -11.98 8.88 -37.89 -0.34 -12.31 16 19 H 0.09 2.58 7.13 -52.49 -0.37 2.21 16 20 C 0.08 2.25 5.45 -17.32 -0.09 2.16 16 21 N -0.81 -22.04 13.93 55.55 0.77 -21.27 16 22 Si 0.91 21.45 24.71 -169.99 -4.20 17.25 16 23 H -0.27 -6.01 6.24 56.52 0.35 -5.65 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.09 1.12 7.26 -51.93 -0.38 0.74 16 31 H 0.08 0.55 8.03 -51.93 -0.42 0.13 16 32 H 0.09 0.86 4.34 -51.93 -0.23 0.64 16 33 H 0.06 0.77 6.73 -51.93 -0.35 0.42 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 0.71 5.40 -51.93 -0.28 0.43 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.42 9.72 6.06 -40.82 -0.25 9.48 16 40 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.11 2.73 4.66 -52.48 -0.24 2.48 16 43 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -30.35 341.85 -7.41 -37.76 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -6.22 Total: 12.36 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -2.19 Total: -4.67 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.04 Total: -56.99 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.20 Total: 17.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.35 -7.41 -37.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164603228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.967 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds