Wall clock time and date at job start Tue Mar 31 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47561 * 2 1 4 4 C 1.46500 * 120.00080 * 273.89760 * 3 2 1 5 5 C 1.53000 * 109.46961 * 263.84722 * 4 3 2 6 6 C 1.34779 * 120.00194 * 93.89107 * 3 2 1 7 7 O 1.21280 * 120.00016 * 4.29249 * 6 3 2 8 8 C 1.50695 * 120.00214 * 184.28990 * 6 3 2 9 9 H 1.09008 * 109.47192 * 308.99765 * 8 6 3 10 10 C 1.52997 * 109.47122 * 68.99883 * 8 6 3 11 11 N 1.46497 * 109.47318 * 189.00241 * 8 6 3 12 12 C 1.38094 * 119.99942 * 155.00151 * 11 8 6 13 13 N 1.32261 * 119.90640 * 0.02562 * 12 11 8 14 14 C 1.31973 * 121.86379 * 179.72664 * 13 12 11 15 15 C 1.38685 * 121.44806 * 0.55024 * 14 13 12 16 16 C 1.38007 * 119.62254 * 359.44277 * 15 14 13 17 17 C 1.41004 * 118.28651 * 0.27310 * 16 15 14 18 18 C 1.41013 * 120.70769 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00029 * 147.34921 * 18 17 16 20 20 C 1.39955 * 120.00005 * 327.34518 * 18 17 16 21 21 N 1.30869 * 119.99802 * 165.09958 * 20 18 17 22 22 Si 1.86795 * 119.99928 * 345.10471 * 20 18 17 23 23 H 1.48502 * 109.47650 * 84.88352 * 22 20 18 24 24 H 1.48506 * 109.46935 * 204.88211 * 22 20 18 25 25 H 1.48504 * 109.47368 * 324.87793 * 22 20 18 26 26 H 1.08993 * 109.47489 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47131 * 300.00619 * 1 2 3 28 28 H 1.09002 * 109.46975 * 60.00027 * 1 2 3 29 29 H 1.08993 * 109.47092 * 239.99321 * 2 1 3 30 30 H 1.09006 * 109.46265 * 119.99905 * 2 1 3 31 31 H 1.09001 * 109.47062 * 23.84336 * 4 3 2 32 32 H 1.08995 * 109.47404 * 143.84288 * 4 3 2 33 33 H 1.09001 * 109.46917 * 299.99703 * 5 4 3 34 34 H 1.09000 * 109.46972 * 59.99708 * 5 4 3 35 35 H 1.08999 * 109.46998 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47005 * 185.45617 * 10 8 6 37 37 H 1.09007 * 109.47288 * 305.45136 * 10 8 6 38 38 H 1.08996 * 109.47360 * 65.45164 * 10 8 6 39 39 H 0.97001 * 119.99810 * 334.99841 * 11 8 6 40 40 H 1.07996 * 119.27517 * 180.29325 * 14 13 12 41 41 H 1.07991 * 120.18818 * 179.71679 * 15 14 13 42 42 H 1.08003 * 120.85655 * 180.29820 * 16 15 14 43 43 H 0.97005 * 119.99802 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1814 2.1005 -1.2658 5 6 3.6367 1.9983 -1.7268 6 6 2.3178 1.9901 1.1645 7 8 2.2575 1.3709 2.2056 8 6 2.7275 3.4403 1.1730 9 1 3.5264 3.5964 0.4480 10 6 1.5257 4.3119 0.8031 11 7 3.2029 3.8057 2.5096 12 6 4.0850 4.8566 2.6653 13 7 4.4991 5.5324 1.6064 14 6 5.3373 6.5464 1.7111 15 6 5.8365 6.9485 2.9409 16 6 5.4440 6.2859 4.0861 17 6 4.5436 5.2082 3.9593 18 6 4.1085 4.4958 5.0957 19 1 3.1132 4.0776 5.1225 20 6 4.9665 4.3306 6.1890 21 7 4.4889 3.9364 7.3419 22 14 6.7934 4.6729 6.0025 23 1 7.0482 6.1225 6.2000 24 1 7.5488 3.8948 7.0171 25 1 7.2356 4.2733 4.6424 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8901 31 1 1.5295 1.6603 -2.0204 32 1 1.9177 3.1486 -1.1246 33 1 4.2886 2.4385 -0.9722 34 1 3.9003 0.9501 -1.8679 35 1 3.7578 2.5331 -2.6688 36 1 1.8438 5.3507 0.7144 37 1 1.1122 3.9761 -0.1480 38 1 0.7648 4.2299 1.5792 39 1 2.8979 3.3094 3.2853 40 1 5.6443 7.0720 0.8191 41 1 6.5249 7.7783 3.0026 42 1 5.8166 6.5854 5.0546 43 1 5.0836 3.8223 8.0998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164603228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:45 Heat of formation + Delta-G solvation = -18.213534 kcal Electronic energy + Delta-G solvation = -23976.353775 eV Core-core repulsion = 20634.700768 eV Total energy + Delta-G solvation = -3341.653008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46767 -40.38764 -37.38076 -36.67613 -35.75406 -33.46423 -33.06397 -32.12341 -30.39557 -29.62137 -27.15130 -25.87533 -24.52467 -24.10397 -23.04676 -22.19561 -20.08675 -19.37409 -18.95478 -17.91906 -17.56296 -16.92102 -16.74110 -16.28071 -15.69642 -15.49498 -15.19400 -14.93892 -14.80426 -14.66874 -14.37874 -14.14270 -13.89043 -13.80017 -13.55432 -13.42011 -13.36161 -13.21177 -12.81462 -12.79383 -12.60143 -12.45268 -12.03755 -11.93447 -11.80951 -11.69140 -11.28823 -10.96995 -10.74025 -10.10203 -9.93822 -9.74631 -8.84026 -8.50713 -6.32829 0.73787 0.89545 1.23562 1.36206 1.45801 1.49519 1.86852 2.10836 2.66336 2.71266 3.41396 3.58301 4.01103 4.08952 4.14401 4.15390 4.21761 4.23643 4.39327 4.45437 4.47785 4.53253 4.65989 4.71618 4.72802 4.79892 4.84552 4.93556 4.97253 5.04536 5.09442 5.23466 5.24833 5.28614 5.38619 5.52564 5.62902 5.75233 5.98574 6.16162 6.28366 6.44541 6.64447 6.79037 6.95533 7.07758 7.72456 8.25171 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018373 B = 0.005004 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.576777 B = 5594.215132 C = 6470.218789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.103 3.897 3 N -0.604 5.604 4 C 0.086 3.914 5 C -0.171 4.171 6 C 0.506 3.494 7 O -0.581 6.581 8 C 0.145 3.855 9 H 0.110 0.890 10 C -0.151 4.151 11 N -0.716 5.716 12 C 0.321 3.679 13 N -0.529 5.529 14 C 0.027 3.973 15 C -0.183 4.183 16 C -0.202 4.202 17 C -0.016 4.016 18 C -0.470 4.470 19 H 0.055 0.945 20 C 0.045 3.955 21 N -0.858 5.858 22 Si 0.967 3.033 23 H -0.248 1.248 24 H -0.281 1.281 25 H -0.268 1.268 26 H 0.081 0.919 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.033 0.967 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.043 0.957 39 H 0.403 0.597 40 H 0.170 0.830 41 H 0.139 0.861 42 H 0.111 0.889 43 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 -2.880 -19.768 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.019 4.019 3 N -0.336 5.336 4 C -0.035 4.035 5 C -0.229 4.229 6 C 0.294 3.706 7 O -0.460 6.460 8 C 0.036 3.964 9 H 0.128 0.872 10 C -0.209 4.209 11 N -0.354 5.354 12 C 0.082 3.918 13 N -0.248 5.248 14 C -0.126 4.126 15 C -0.206 4.206 16 C -0.228 4.228 17 C -0.024 4.024 18 C -0.502 4.502 19 H 0.073 0.927 20 C -0.168 4.168 21 N -0.486 5.486 22 Si 0.791 3.209 23 H -0.173 1.173 24 H -0.207 1.207 25 H -0.193 1.193 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.062 0.938 39 H 0.241 0.759 40 H 0.187 0.813 41 H 0.156 0.844 42 H 0.128 0.872 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.792 -3.534 -19.984 20.645 hybrid contribution 0.754 -0.070 2.063 2.198 sum -3.038 -3.605 -17.921 18.530 Atomic orbital electron populations 1.22076 0.94665 1.03124 1.01847 1.21590 0.95251 0.81623 1.03387 1.48082 1.64653 1.14748 1.06158 1.22177 0.98235 0.98723 0.84337 1.22222 0.95899 1.02658 1.02144 1.21135 0.76072 0.89572 0.83792 1.90678 1.54365 1.67221 1.33759 1.20666 0.98840 0.89864 0.87022 0.87219 1.22231 0.95989 1.00440 1.02269 1.43874 1.49557 1.34237 1.07715 1.18581 0.93880 0.90348 0.88967 1.66765 1.16519 1.10265 1.31213 1.22294 0.97329 0.95775 0.97217 1.21691 1.03371 1.02257 0.93232 1.21486 1.04825 0.97636 0.98884 1.18216 0.96770 0.95085 0.92306 1.18996 1.00849 1.31992 0.98353 0.92736 1.26701 1.04916 0.91860 0.93314 1.69726 1.39585 1.37572 1.01734 0.85542 0.77520 0.79398 0.78424 1.17270 1.20727 1.19269 0.89986 0.95133 0.90475 0.87427 0.92608 0.86492 0.88809 0.94779 0.92149 0.88821 0.91420 0.87911 0.93759 0.75908 0.81341 0.84365 0.87154 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.24 71.98 0.74 -2.00 16 2 C 0.10 2.10 6.17 86.38 0.53 2.64 16 3 N -0.60 -14.31 2.49 -821.83 -2.04 -16.35 16 4 C 0.09 1.32 5.68 86.38 0.49 1.81 16 5 C -0.17 -2.72 10.07 71.98 0.72 -1.99 16 6 C 0.51 17.41 6.97 87.66 0.61 18.02 16 7 O -0.58 -25.63 15.33 -3.03 -0.05 -25.68 16 8 C 0.15 5.04 2.18 44.24 0.10 5.14 16 9 H 0.11 3.69 5.63 -2.38 -0.01 3.67 16 10 C -0.15 -4.31 9.13 71.98 0.66 -3.65 16 11 N -0.72 -32.43 5.05 -326.71 -1.65 -34.08 16 12 C 0.32 15.48 7.49 134.06 1.00 16.48 16 13 N -0.53 -22.52 9.17 -191.45 -1.76 -24.28 16 14 C 0.03 1.03 11.17 84.78 0.95 1.98 16 15 C -0.18 -7.34 10.08 22.32 0.22 -7.12 16 16 C -0.20 -9.67 7.40 22.89 0.17 -9.50 16 17 C -0.02 -0.86 5.08 -21.06 -0.11 -0.96 16 18 C -0.47 -27.24 8.88 23.37 0.21 -27.04 16 19 H 0.05 3.42 7.13 -2.91 -0.02 3.40 16 20 C 0.04 2.51 5.45 85.25 0.46 2.97 16 21 N -0.86 -49.32 13.93 21.83 0.30 -49.02 16 22 Si 0.97 44.96 24.71 68.60 1.69 46.65 16 23 H -0.25 -10.61 6.24 99.48 0.62 -9.99 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 1.45 8.10 -2.39 -0.02 1.43 16 30 H 0.06 1.49 7.26 -2.38 -0.02 1.48 16 31 H 0.12 1.00 8.03 -2.39 -0.02 0.98 16 32 H 0.09 1.41 4.34 -2.39 -0.01 1.40 16 33 H 0.03 0.75 6.73 -2.39 -0.02 0.74 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.10 2.06 5.40 -2.38 -0.01 2.05 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.40 20.47 6.06 -92.71 -0.56 19.90 16 40 H 0.17 4.95 8.06 -2.91 -0.02 4.93 16 41 H 0.14 4.46 8.06 -2.92 -0.02 4.44 16 42 H 0.11 5.25 4.66 -2.91 -0.01 5.24 16 43 H 0.29 15.11 8.30 -92.70 -0.77 14.34 16 Total: -1.00 -71.43 341.85 3.64 -67.79 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: 0.38 Total: 38.19 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 6.76 Total: -3.23 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -5.14 Total: -123.73 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.69 Total: 46.65 kcal Total: -71.43 3.64 -67.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164603228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.576 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds