Wall clock time and date at job start Tue Mar 31 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46823 * 2 1 4 4 C 1.46499 * 119.99738 * 269.99831 * 3 2 1 5 5 C 1.52999 * 109.47429 * 276.94547 * 4 3 2 6 6 C 1.34772 * 119.99836 * 90.00065 * 3 2 1 7 7 O 1.21278 * 120.00198 * 4.71590 * 6 3 2 8 8 C 1.50704 * 119.99878 * 184.70618 * 6 3 2 9 9 H 1.09004 * 109.47015 * 305.87253 * 8 6 3 10 10 C 1.52994 * 109.46911 * 65.87094 * 8 6 3 11 11 N 1.46500 * 109.47014 * 185.87196 * 8 6 3 12 12 C 1.38826 * 120.00113 * 155.00167 * 11 8 6 13 13 C 1.39803 * 119.58137 * 359.97438 * 12 11 8 14 14 C 1.38591 * 119.48731 * 179.97438 * 13 12 11 15 15 C 1.38392 * 118.68250 * 0.25666 * 14 13 12 16 16 C 1.40556 * 119.14809 * 359.48187 * 15 14 13 17 17 C 1.41309 * 119.78276 * 180.25149 * 16 15 14 18 18 H 1.08007 * 120.00465 * 0.26979 * 17 16 15 19 19 C 1.40027 * 120.00204 * 180.27466 * 17 16 15 20 20 N 1.30745 * 119.99470 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00458 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47083 * 59.99435 * 21 19 17 23 23 H 1.48496 * 109.47104 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46850 * 299.99727 * 21 19 17 25 25 N 1.31946 * 119.58726 * 179.97438 * 12 11 8 26 26 H 1.08998 * 109.47283 * 59.99850 * 1 2 3 27 27 H 1.09000 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46975 * 300.00053 * 1 2 3 29 29 H 1.09000 * 109.47109 * 240.00366 * 2 1 3 30 30 H 1.08998 * 109.47283 * 120.00150 * 2 1 3 31 31 H 1.09003 * 109.47208 * 36.95247 * 4 3 2 32 32 H 1.09003 * 109.46657 * 156.94815 * 4 3 2 33 33 H 1.09003 * 109.47261 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47106 * 300.00187 * 5 4 3 35 35 H 1.09003 * 109.46982 * 60.00467 * 5 4 3 36 36 H 1.09003 * 109.47212 * 188.72870 * 10 8 6 37 37 H 1.08999 * 109.47364 * 308.72241 * 10 8 6 38 38 H 1.08997 * 109.47525 * 68.72727 * 10 8 6 39 39 H 0.97003 * 120.00131 * 334.99658 * 11 8 6 40 40 H 1.08002 * 120.25493 * 0.02562 * 13 12 11 41 41 H 1.08004 * 120.65606 * 179.97438 * 14 13 12 42 42 H 1.08002 * 120.42131 * 179.74386 * 15 14 13 43 43 H 0.97008 * 120.00130 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6471 1.6926 -1.7977 6 6 2.2429 2.0166 1.1672 7 8 2.1233 1.4190 2.2157 8 6 2.6429 3.4696 1.1694 9 1 3.5180 3.6064 0.5340 10 6 1.4871 4.3175 0.6350 11 7 2.9625 3.8860 2.5371 12 6 3.8215 4.9547 2.7546 13 6 4.3771 5.6269 1.6619 14 6 5.2340 6.6939 1.8813 15 6 5.5191 7.0597 3.1852 16 6 4.9247 6.3479 4.2414 17 6 5.2023 6.7134 5.5779 18 1 5.8658 7.5400 5.7851 19 6 4.6172 6.0038 6.6338 20 7 3.8137 5.0033 6.3830 21 14 4.9835 6.4873 8.4006 22 1 4.5533 7.8901 8.6292 23 1 4.2460 5.5872 9.3231 24 1 6.4420 6.3693 8.6538 25 7 4.1033 5.3231 3.9898 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5035 1.7784 -1.9941 32 1 2.2165 3.1494 -1.1106 33 1 3.8289 2.2068 -2.7415 34 1 4.4060 1.9861 -1.0724 35 1 3.6931 0.6151 -1.9558 36 1 1.8257 5.3435 0.4902 37 1 1.1469 3.9096 -0.3169 38 1 0.6651 4.3038 1.3507 39 1 2.5738 3.4150 3.2908 40 1 4.1397 5.3177 0.6547 41 1 5.6741 7.2264 1.0511 42 1 6.1864 7.8842 3.3884 43 1 3.4080 4.5119 7.1144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164624047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:00 Heat of formation + Delta-G solvation = 9.644622 kcal Electronic energy + Delta-G solvation = -23603.398496 eV Core-core repulsion = 20262.953509 eV Total energy + Delta-G solvation = -3340.444987 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.26794 -38.17314 -36.31678 -35.35358 -33.35418 -32.32013 -30.95749 -30.08739 -29.39730 -27.97555 -25.40781 -24.63522 -23.79021 -22.35637 -21.50236 -20.32545 -18.92338 -17.47084 -17.29340 -16.53055 -15.80615 -15.34723 -14.99898 -14.62961 -14.34281 -14.12004 -13.91189 -13.69495 -13.37247 -13.17912 -12.79891 -12.67538 -12.64977 -12.46719 -12.05938 -11.96837 -11.84567 -11.82544 -11.41147 -11.15643 -11.09527 -10.99205 -10.95381 -10.60172 -10.37794 -9.89465 -9.59821 -9.46104 -8.88993 -8.78145 -7.88949 -7.45628 -6.50215 -6.26759 -4.43554 2.69414 2.84704 2.93680 3.14976 3.17035 3.27492 3.34029 4.02952 4.17848 4.47136 4.71570 4.88194 4.92642 4.95259 5.13787 5.16333 5.26390 5.27666 5.40092 5.44484 5.55620 5.63738 5.71823 5.80725 5.94125 6.00026 6.04733 6.09879 6.16635 6.33505 6.47854 6.58244 6.88478 6.90534 6.94771 7.27954 7.31158 7.62551 7.83279 7.93365 8.20424 8.22544 8.39630 8.74828 8.84572 9.15881 10.29808 10.45652 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.004008 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.394894 B = 6985.060075 C = 7901.716698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 N -0.615 5.615 4 C 0.089 3.911 5 C -0.173 4.173 6 C 0.513 3.487 7 O -0.526 6.526 8 C 0.149 3.851 9 H 0.099 0.901 10 C -0.170 4.170 11 N -0.721 5.721 12 C 0.416 3.584 13 C -0.372 4.372 14 C -0.031 4.031 15 C -0.317 4.317 16 C 0.293 3.707 17 C -0.434 4.434 18 H 0.083 0.917 19 C 0.070 3.930 20 N -0.712 5.712 21 Si 0.905 3.095 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.266 1.266 25 N -0.529 5.529 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.406 0.594 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 -7.218 -14.893 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.350 5.350 4 C -0.034 4.034 5 C -0.231 4.231 6 C 0.301 3.699 7 O -0.401 6.401 8 C 0.037 3.963 9 H 0.116 0.884 10 C -0.229 4.229 11 N -0.359 5.359 12 C 0.176 3.824 13 C -0.398 4.398 14 C -0.055 4.055 15 C -0.340 4.340 16 C 0.166 3.834 17 C -0.466 4.466 18 H 0.101 0.899 19 C -0.155 4.155 20 N -0.333 5.333 21 Si 0.729 3.271 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.190 1.190 25 N -0.250 5.250 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.243 0.757 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.017 -8.141 -13.682 17.020 hybrid contribution 0.396 0.425 0.138 0.597 sum -5.622 -7.716 -13.545 16.571 Atomic orbital electron populations 1.22126 0.96000 1.02044 1.02322 1.21371 0.94211 0.82575 1.03054 1.47967 1.66854 1.14218 1.05973 1.21924 0.97304 0.98898 0.85232 1.22213 0.97301 1.01995 1.01625 1.21010 0.76203 0.89443 0.83270 1.90695 1.50634 1.67618 1.31139 1.20428 0.98844 0.89340 0.87663 0.88368 1.22463 0.98437 1.01380 1.00639 1.43924 1.52262 1.35231 1.04507 1.18450 0.87158 0.86008 0.90778 1.20579 1.15389 1.07692 0.96180 1.20569 0.94776 0.94539 0.95617 1.21529 1.11790 1.07450 0.93246 1.18188 0.86287 0.86120 0.92783 1.19559 1.24046 1.13583 0.89416 0.89917 1.26061 0.94093 0.94263 1.01094 1.70143 1.17824 1.12304 1.33026 0.86440 0.79530 0.79410 0.81688 1.19028 1.20340 1.19024 1.68192 1.21466 1.18924 1.16467 0.92683 0.91744 0.92167 0.90793 0.89832 0.90543 0.88530 0.91297 0.91994 0.92468 0.90532 0.91576 0.91763 0.75691 0.89253 0.88973 0.88745 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 37.16 0.38 -1.14 16 2 C 0.11 1.13 6.18 -4.04 -0.02 1.10 16 3 N -0.62 -7.19 2.48 -173.68 -0.43 -7.62 16 4 C 0.09 0.76 5.43 -4.04 -0.02 0.73 16 5 C -0.17 -1.40 10.22 37.16 0.38 -1.02 16 6 C 0.51 8.20 7.05 -10.99 -0.08 8.12 16 7 O -0.53 -10.49 15.37 5.56 0.09 -10.41 16 8 C 0.15 2.43 1.83 -69.08 -0.13 2.31 16 9 H 0.10 1.54 6.00 -51.93 -0.31 1.23 16 10 C -0.17 -2.33 8.90 37.15 0.33 -2.00 16 11 N -0.72 -15.64 5.14 -55.03 -0.28 -15.92 16 12 C 0.42 10.40 7.63 -155.33 -1.18 9.22 16 13 C -0.37 -8.46 8.92 -38.87 -0.35 -8.80 16 14 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 15 C -0.32 -8.08 9.83 -38.65 -0.38 -8.46 16 16 C 0.29 8.31 6.55 -85.00 -0.56 7.76 16 17 C -0.43 -12.02 9.14 -37.74 -0.34 -12.36 16 18 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 19 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 20 N -0.71 -19.72 11.46 55.55 0.64 -19.08 16 21 Si 0.91 19.26 29.56 -169.99 -5.02 14.23 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 N -0.53 -15.08 7.89 -10.33 -0.08 -15.16 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.57 7.98 -51.93 -0.41 0.16 16 30 H 0.08 1.02 7.36 -51.93 -0.38 0.64 16 31 H 0.08 0.49 8.12 -51.93 -0.42 0.06 16 32 H 0.10 0.82 4.11 -51.93 -0.21 0.60 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.44 8.05 -51.93 -0.42 0.02 16 36 H 0.08 1.10 7.59 -51.93 -0.39 0.71 16 37 H 0.07 0.67 5.43 -51.93 -0.28 0.39 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.41 9.58 7.86 -40.82 -0.32 9.26 16 40 H 0.09 1.73 5.93 -52.49 -0.31 1.42 16 41 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -32.54 350.31 -8.68 -41.23 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.40 Total: 11.34 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.47 Total: -3.89 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.16 Total: -57.78 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.54 -8.68 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164624047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.874 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds