Wall clock time and date at job start Tue Mar 31 2020 06:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46823 * 2 1 4 4 C 1.46499 * 119.99738 * 269.99831 * 3 2 1 5 5 C 1.52999 * 109.47429 * 276.94547 * 4 3 2 6 6 C 1.34772 * 119.99836 * 90.00065 * 3 2 1 7 7 O 1.21278 * 120.00198 * 4.71590 * 6 3 2 8 8 C 1.50704 * 119.99878 * 184.70618 * 6 3 2 9 9 H 1.09004 * 109.47015 * 305.87253 * 8 6 3 10 10 C 1.52994 * 109.46911 * 65.87094 * 8 6 3 11 11 N 1.46500 * 109.47014 * 185.87196 * 8 6 3 12 12 C 1.38826 * 120.00113 * 155.00167 * 11 8 6 13 13 C 1.39803 * 119.58137 * 359.97438 * 12 11 8 14 14 C 1.38591 * 119.48731 * 179.97438 * 13 12 11 15 15 C 1.38392 * 118.68250 * 0.25666 * 14 13 12 16 16 C 1.40556 * 119.14809 * 359.48187 * 15 14 13 17 17 C 1.41309 * 119.78276 * 180.25149 * 16 15 14 18 18 H 1.08007 * 120.00465 * 0.26979 * 17 16 15 19 19 C 1.40027 * 120.00204 * 180.27466 * 17 16 15 20 20 N 1.30745 * 119.99470 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00458 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47083 * 59.99435 * 21 19 17 23 23 H 1.48496 * 109.47104 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46850 * 299.99727 * 21 19 17 25 25 N 1.31946 * 119.58726 * 179.97438 * 12 11 8 26 26 H 1.08998 * 109.47283 * 59.99850 * 1 2 3 27 27 H 1.09000 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46975 * 300.00053 * 1 2 3 29 29 H 1.09000 * 109.47109 * 240.00366 * 2 1 3 30 30 H 1.08998 * 109.47283 * 120.00150 * 2 1 3 31 31 H 1.09003 * 109.47208 * 36.95247 * 4 3 2 32 32 H 1.09003 * 109.46657 * 156.94815 * 4 3 2 33 33 H 1.09003 * 109.47261 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47106 * 300.00187 * 5 4 3 35 35 H 1.09003 * 109.46982 * 60.00467 * 5 4 3 36 36 H 1.09003 * 109.47212 * 188.72870 * 10 8 6 37 37 H 1.08999 * 109.47364 * 308.72241 * 10 8 6 38 38 H 1.08997 * 109.47525 * 68.72727 * 10 8 6 39 39 H 0.97003 * 120.00131 * 334.99658 * 11 8 6 40 40 H 1.08002 * 120.25493 * 0.02562 * 13 12 11 41 41 H 1.08004 * 120.65606 * 179.97438 * 14 13 12 42 42 H 1.08002 * 120.42131 * 179.74386 * 15 14 13 43 43 H 0.97008 * 120.00130 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6471 1.6926 -1.7977 6 6 2.2429 2.0166 1.1672 7 8 2.1233 1.4190 2.2157 8 6 2.6429 3.4696 1.1694 9 1 3.5180 3.6064 0.5340 10 6 1.4871 4.3175 0.6350 11 7 2.9625 3.8860 2.5371 12 6 3.8215 4.9547 2.7546 13 6 4.3771 5.6269 1.6619 14 6 5.2340 6.6939 1.8813 15 6 5.5191 7.0597 3.1852 16 6 4.9247 6.3479 4.2414 17 6 5.2023 6.7134 5.5779 18 1 5.8658 7.5400 5.7851 19 6 4.6172 6.0038 6.6338 20 7 3.8137 5.0033 6.3830 21 14 4.9835 6.4873 8.4006 22 1 4.5533 7.8901 8.6292 23 1 4.2460 5.5872 9.3231 24 1 6.4420 6.3693 8.6538 25 7 4.1033 5.3231 3.9898 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5035 1.7784 -1.9941 32 1 2.2165 3.1494 -1.1106 33 1 3.8289 2.2068 -2.7415 34 1 4.4060 1.9861 -1.0724 35 1 3.6931 0.6151 -1.9558 36 1 1.8257 5.3435 0.4902 37 1 1.1469 3.9096 -0.3169 38 1 0.6651 4.3038 1.3507 39 1 2.5738 3.4150 3.2908 40 1 4.1397 5.3177 0.6547 41 1 5.6741 7.2264 1.0511 42 1 6.1864 7.8842 3.3884 43 1 3.4080 4.5119 7.1144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164624047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:59 Heat of formation + Delta-G solvation = -10.767264 kcal Electronic energy + Delta-G solvation = -23604.283622 eV Core-core repulsion = 20262.953509 eV Total energy + Delta-G solvation = -3341.330113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47797 -40.00531 -37.42279 -36.91842 -35.22200 -33.37093 -32.45138 -31.78879 -30.44928 -29.60553 -27.32970 -25.79998 -24.54733 -23.58805 -23.37209 -21.97928 -20.12574 -19.19557 -18.76708 -17.71735 -17.26192 -16.69159 -16.55563 -16.23667 -15.87433 -15.50910 -14.96800 -14.88318 -14.69515 -14.52656 -14.28387 -14.04333 -13.65160 -13.54802 -13.43838 -13.36536 -12.93480 -12.77490 -12.75069 -12.70002 -12.58876 -12.48494 -12.17686 -11.93688 -11.80032 -11.70519 -11.32517 -10.85762 -10.66168 -9.85094 -9.76005 -9.42406 -8.34302 -8.21322 -6.47917 1.07217 1.35754 1.39765 1.47872 1.52805 1.58701 1.82671 2.24428 2.63612 2.93124 3.37546 3.96008 3.99989 4.02891 4.13044 4.19869 4.22555 4.41120 4.44299 4.49194 4.52446 4.63207 4.73069 4.79534 4.81765 4.91533 4.97631 4.99003 5.02460 5.04705 5.12825 5.23963 5.27239 5.34546 5.38442 5.60694 5.71960 5.97193 6.05615 6.21751 6.26047 6.55203 6.79656 6.90764 7.06294 7.19532 8.35775 8.52281 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.004008 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.394894 B = 6985.060075 C = 7901.716698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.602 5.602 4 C 0.081 3.919 5 C -0.170 4.170 6 C 0.509 3.491 7 O -0.579 6.579 8 C 0.145 3.855 9 H 0.111 0.889 10 C -0.161 4.161 11 N -0.725 5.725 12 C 0.396 3.604 13 C -0.361 4.361 14 C -0.026 4.026 15 C -0.342 4.342 16 C 0.259 3.741 17 C -0.474 4.474 18 H 0.089 0.911 19 C 0.024 3.976 20 N -0.756 5.756 21 Si 0.986 3.014 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.258 1.258 25 N -0.570 5.570 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.036 0.964 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.391 0.609 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.104 0.896 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 -7.210 -17.874 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.335 5.335 4 C -0.040 4.040 5 C -0.229 4.229 6 C 0.297 3.703 7 O -0.458 6.458 8 C 0.035 3.965 9 H 0.128 0.872 10 C -0.219 4.219 11 N -0.361 5.361 12 C 0.156 3.844 13 C -0.387 4.387 14 C -0.050 4.050 15 C -0.365 4.365 16 C 0.132 3.868 17 C -0.506 4.506 18 H 0.107 0.893 19 C -0.197 4.197 20 N -0.378 5.378 21 Si 0.807 3.193 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.182 1.182 25 N -0.292 5.292 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.048 0.952 29 H 0.127 0.873 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.225 0.775 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.122 0.878 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.282 -8.145 -16.777 19.679 hybrid contribution 0.446 0.335 0.811 0.984 sum -5.835 -7.810 -15.966 18.707 Atomic orbital electron populations 1.22071 0.94870 1.03091 1.01762 1.21560 0.95103 0.81611 1.03387 1.48064 1.64925 1.14700 1.05833 1.22256 0.98811 0.98830 0.84083 1.22196 0.96017 1.02684 1.01960 1.20983 0.76171 0.89252 0.83894 1.90677 1.53395 1.68463 1.33307 1.20737 1.00322 0.90337 0.85080 0.87197 1.22397 0.96643 1.00815 1.02042 1.44147 1.51359 1.34200 1.06370 1.18909 0.87742 0.86969 0.90798 1.20969 1.13832 1.06633 0.97244 1.21036 0.93901 0.94254 0.95855 1.21709 1.12690 1.08125 0.94023 1.18674 0.87080 0.86891 0.94141 1.19948 1.25512 1.14782 0.90356 0.89308 1.27012 0.93281 0.93706 1.05726 1.70285 1.19271 1.13746 1.34516 0.85215 0.79521 0.79274 0.75338 1.18077 1.19670 1.18241 1.68127 1.22574 1.19832 1.18709 0.90597 0.90023 0.95195 0.87261 0.92660 0.87012 0.88277 0.88926 0.94451 0.91924 0.90840 0.87364 0.93426 0.77471 0.85409 0.84660 0.87828 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.24 71.98 0.74 -1.85 16 2 C 0.11 1.96 6.18 86.38 0.53 2.49 16 3 N -0.60 -12.89 2.48 -821.79 -2.03 -14.93 16 4 C 0.08 1.05 5.43 86.38 0.47 1.52 16 5 C -0.17 -2.14 10.22 71.98 0.74 -1.40 16 6 C 0.51 16.23 7.05 87.66 0.62 16.84 16 7 O -0.58 -24.21 15.37 -3.02 -0.05 -24.26 16 8 C 0.14 4.63 1.83 44.24 0.08 4.71 16 9 H 0.11 3.22 6.00 -2.38 -0.01 3.21 16 10 C -0.16 -4.09 8.90 71.98 0.64 -3.45 16 11 N -0.73 -32.39 5.14 -328.02 -1.69 -34.07 16 12 C 0.40 20.18 7.63 133.42 1.02 21.19 16 13 C -0.36 -15.87 8.92 22.73 0.20 -15.67 16 14 C -0.03 -1.16 10.15 22.39 0.23 -0.94 16 15 C -0.34 -17.62 9.83 22.87 0.22 -17.39 16 16 C 0.26 15.26 6.55 40.18 0.26 15.53 16 17 C -0.47 -27.30 9.14 23.46 0.21 -27.09 16 18 H 0.09 4.75 7.85 -2.91 -0.02 4.73 16 19 C 0.02 1.31 5.50 85.29 0.47 1.78 16 20 N -0.76 -43.98 11.46 21.84 0.25 -43.73 16 21 Si 0.99 40.67 29.56 68.60 2.03 42.70 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 25 N -0.57 -33.86 7.89 -186.59 -1.47 -35.33 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 1.28 7.98 -2.39 -0.02 1.26 16 30 H 0.05 1.36 7.36 -2.39 -0.02 1.35 16 31 H 0.11 0.77 8.12 -2.39 -0.02 0.75 16 32 H 0.10 1.24 4.11 -2.39 -0.01 1.23 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.73 8.05 -2.39 -0.02 0.71 16 36 H 0.07 1.94 7.59 -2.39 -0.02 1.92 16 37 H 0.11 1.81 5.43 -2.39 -0.01 1.80 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.39 19.61 7.86 -92.71 -0.73 18.89 16 40 H 0.13 4.52 5.93 -2.91 -0.02 4.50 16 41 H 0.14 4.75 8.06 -2.91 -0.02 4.72 16 42 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.27 14.65 8.29 -92.70 -0.77 13.88 16 Total: -1.00 -76.92 350.31 3.76 -73.16 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.29 Total: 40.19 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.43 Total: -3.72 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -4.94 Total: -128.07 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -76.92 3.76 -73.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164624047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.390 kcal (2) G-P(sol) polarization free energy of solvation -76.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds