Wall clock time and date at job start Tue Mar 31 2020 06:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47377 * 2 1 4 4 C 1.46501 * 119.99845 * 84.66137 * 3 2 1 5 5 C 1.53005 * 109.47202 * 90.00081 * 4 3 2 6 6 C 1.34767 * 120.00058 * 264.39038 * 3 2 1 7 7 O 1.21282 * 119.99809 * 185.00331 * 6 3 2 8 8 C 1.50696 * 120.00204 * 5.00179 * 6 3 2 9 9 H 1.09005 * 109.46892 * 46.31369 * 8 6 3 10 10 C 1.53002 * 109.47261 * 286.31505 * 8 6 3 11 11 N 1.46508 * 109.47356 * 166.31101 * 8 6 3 12 12 C 1.38817 * 119.99902 * 205.00198 * 11 8 6 13 13 C 1.39799 * 119.58958 * 359.72633 * 12 11 8 14 14 C 1.38591 * 119.49323 * 179.78991 * 13 12 11 15 15 C 1.38391 * 118.67894 * 0.47855 * 14 13 12 16 16 C 1.40557 * 119.14894 * 359.74530 * 15 14 13 17 17 C 1.41314 * 119.78337 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00295 * 0.02983 * 17 16 15 19 19 C 1.40026 * 120.00349 * 180.02562 * 17 16 15 20 20 N 1.30748 * 119.99469 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00237 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47130 * 90.00579 * 21 19 17 23 23 H 1.48503 * 109.47213 * 210.00023 * 21 19 17 24 24 H 1.48494 * 109.47472 * 330.00254 * 21 19 17 25 25 N 1.31957 * 119.57899 * 180.02562 * 12 11 8 26 26 H 1.08996 * 109.47043 * 299.99997 * 1 2 3 27 27 H 1.09004 * 109.47033 * 60.00354 * 1 2 3 28 28 H 1.09004 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47500 * 239.99981 * 2 1 3 30 30 H 1.09001 * 109.46960 * 120.00403 * 2 1 3 31 31 H 1.08999 * 109.47125 * 210.00297 * 4 3 2 32 32 H 1.09005 * 109.47019 * 330.00843 * 4 3 2 33 33 H 1.08999 * 109.47257 * 300.00135 * 5 4 3 34 34 H 1.09001 * 109.46626 * 59.99966 * 5 4 3 35 35 H 1.08994 * 109.46899 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.46764 * 289.94861 * 10 8 6 37 37 H 1.08997 * 109.46959 * 49.95062 * 10 8 6 38 38 H 1.09003 * 109.47013 * 169.94993 * 10 8 6 39 39 H 0.96993 * 119.99260 * 25.00353 * 11 8 6 40 40 H 1.07999 * 120.24967 * 359.97438 * 13 12 11 41 41 H 1.07991 * 120.66122 * 180.22548 * 14 13 12 42 42 H 1.08001 * 120.42439 * 179.76585 * 15 14 13 43 43 H 0.97004 * 119.99698 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1513 2.1111 1.2633 5 6 3.5517 1.8864 1.8373 6 6 2.3506 1.9785 -1.1615 7 8 2.8399 3.0882 -1.1545 8 6 2.1141 1.2675 -2.4690 9 1 1.1118 0.8391 -2.4735 10 6 3.1468 0.1510 -2.6365 11 7 2.2425 2.2212 -3.5737 12 6 1.5921 1.9818 -4.7765 13 6 0.8215 0.8249 -4.9262 14 6 0.1695 0.5900 -6.1264 15 6 0.3109 1.5103 -7.1503 16 6 1.1034 2.6519 -6.9401 17 6 1.2574 3.6000 -7.9766 18 1 0.7667 3.4464 -8.9263 19 6 2.0463 4.7387 -7.7724 20 7 2.6408 4.9245 -6.6227 21 14 2.2493 5.9923 -9.1422 22 1 1.1808 7.0182 -9.0368 23 1 3.5771 6.6465 -9.0218 24 1 2.1516 5.3091 -10.4570 25 7 1.7138 2.8460 -5.7662 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9978 3.1756 1.0857 32 1 1.4060 1.7497 1.9719 33 1 3.7051 0.8220 2.0148 34 1 4.2970 2.2478 1.1287 35 1 3.6506 2.4299 2.7769 36 1 4.1298 0.5885 -2.8108 37 1 3.1747 -0.4567 -1.7321 38 1 2.8715 -0.4740 -3.4860 39 1 2.7819 3.0199 -3.4646 40 1 0.7326 0.1213 -4.1118 41 1 -0.4336 -0.2956 -6.2613 42 1 -0.1816 1.3534 -8.0985 43 1 3.1876 5.7132 -6.4814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164624050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:08 Heat of formation + Delta-G solvation = 8.370316 kcal Electronic energy + Delta-G solvation = -23619.822794 eV Core-core repulsion = 20279.322548 eV Total energy + Delta-G solvation = -3340.500245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26218 -38.17605 -36.31048 -35.35071 -33.35733 -32.32108 -30.92723 -30.07454 -29.40869 -27.98520 -25.41050 -24.64867 -23.79386 -22.33797 -21.50852 -20.31920 -18.95142 -17.47099 -17.30534 -16.54266 -15.72955 -15.32527 -14.98270 -14.66900 -14.33651 -14.12035 -13.92186 -13.70184 -13.38003 -13.18968 -12.79441 -12.67584 -12.63651 -12.44432 -12.05552 -11.98402 -11.84841 -11.83583 -11.43531 -11.17004 -11.09142 -10.97033 -10.92949 -10.59952 -10.37904 -9.88187 -9.60182 -9.46973 -8.90223 -8.77809 -7.89305 -7.46118 -6.50625 -6.27230 -4.43825 2.68696 2.85229 2.92069 3.15306 3.18292 3.27069 3.33355 4.02715 4.18506 4.46198 4.71995 4.87865 4.93401 4.95770 5.13311 5.16784 5.26786 5.28396 5.41177 5.45092 5.55512 5.64689 5.73414 5.81321 5.93863 6.02801 6.06867 6.09522 6.16396 6.34728 6.47375 6.58142 6.88208 6.90254 6.94542 7.27827 7.31060 7.62229 7.82953 7.93009 8.20503 8.22372 8.39271 8.74626 8.84274 9.15573 10.29326 10.45231 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.004037 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.207748 B = 6934.944477 C = 7858.101916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 N -0.615 5.615 4 C 0.112 3.888 5 C -0.167 4.167 6 C 0.514 3.486 7 O -0.526 6.526 8 C 0.149 3.851 9 H 0.098 0.902 10 C -0.169 4.169 11 N -0.722 5.722 12 C 0.416 3.584 13 C -0.372 4.372 14 C -0.031 4.031 15 C -0.317 4.317 16 C 0.293 3.707 17 C -0.434 4.434 18 H 0.083 0.917 19 C 0.070 3.930 20 N -0.712 5.712 21 Si 0.905 3.095 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 N -0.529 5.529 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.406 0.594 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -9.029 14.701 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.033 4.033 3 N -0.350 5.350 4 C -0.010 4.010 5 C -0.225 4.225 6 C 0.301 3.699 7 O -0.401 6.401 8 C 0.037 3.963 9 H 0.116 0.884 10 C -0.228 4.228 11 N -0.360 5.360 12 C 0.176 3.824 13 C -0.398 4.398 14 C -0.055 4.055 15 C -0.340 4.340 16 C 0.166 3.834 17 C -0.466 4.466 18 H 0.101 0.899 19 C -0.155 4.155 20 N -0.333 5.333 21 Si 0.729 3.271 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 N -0.250 5.250 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.243 0.757 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.306 -7.671 14.994 16.845 hybrid contribution -0.310 -0.031 -0.507 0.595 sum -0.004 -7.702 14.487 16.407 Atomic orbital electron populations 1.22228 0.95699 1.02470 1.02837 1.21903 0.94822 0.82513 1.04022 1.47988 1.66232 1.14460 1.06338 1.21374 0.97041 0.98063 0.84563 1.22122 0.97712 1.01585 1.01088 1.21003 0.77105 0.86210 0.85571 1.90693 1.42478 1.19980 1.86977 1.20460 1.00845 0.90310 0.84656 0.88398 1.22438 0.99891 0.98141 1.02334 1.43942 1.56321 1.26041 1.09693 1.18453 0.87962 0.89669 0.86337 1.20580 1.16164 1.02958 1.00117 1.20567 0.95536 0.96394 0.93007 1.21530 1.12327 1.00489 0.99641 1.18200 0.86364 0.89741 0.89109 1.19592 1.25285 1.02896 0.98790 0.89876 1.26065 0.94635 0.98749 0.96082 1.70155 1.18201 1.23287 1.21645 0.86382 0.78276 0.80586 0.81852 1.19519 1.20241 1.18616 1.68203 1.27984 1.28850 1.00008 0.92431 0.91869 0.91305 0.88744 0.90481 0.90020 0.90761 0.92747 0.92032 0.91811 0.91644 0.91770 0.90510 0.75662 0.89239 0.88970 0.88739 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.18 37.16 0.38 -1.05 16 2 C 0.09 0.77 5.57 -4.04 -0.02 0.75 16 3 N -0.62 -7.25 2.47 -173.68 -0.43 -7.68 16 4 C 0.11 1.16 6.11 -4.04 -0.02 1.13 16 5 C -0.17 -1.55 10.24 37.16 0.38 -1.17 16 6 C 0.51 8.21 6.99 -10.99 -0.08 8.14 16 7 O -0.53 -10.44 15.49 5.56 0.09 -10.35 16 8 C 0.15 2.44 1.84 -69.08 -0.13 2.31 16 9 H 0.10 1.53 5.19 -51.93 -0.27 1.26 16 10 C -0.17 -2.34 8.94 37.16 0.33 -2.01 16 11 N -0.72 -15.64 5.18 -55.03 -0.29 -15.93 16 12 C 0.42 10.37 7.63 -155.33 -1.18 9.19 16 13 C -0.37 -8.43 8.92 -38.87 -0.35 -8.78 16 14 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 15 C -0.32 -8.06 9.83 -38.65 -0.38 -8.44 16 16 C 0.29 8.29 6.55 -85.00 -0.56 7.73 16 17 C -0.43 -11.99 9.14 -37.74 -0.34 -12.33 16 18 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 19 C 0.07 1.85 5.50 -17.34 -0.10 1.75 16 20 N -0.71 -19.69 11.46 55.55 0.64 -19.05 16 21 Si 0.90 19.24 29.56 -169.99 -5.02 14.21 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 25 N -0.53 -15.05 7.89 -10.33 -0.08 -15.14 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.65 7.38 -51.93 -0.38 0.27 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.80 4.14 -51.93 -0.21 0.58 16 30 H 0.08 0.50 8.11 -51.93 -0.42 0.07 16 31 H 0.08 1.00 7.50 -51.93 -0.39 0.62 16 32 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.67 5.56 -51.93 -0.29 0.38 16 38 H 0.08 1.11 7.57 -51.93 -0.39 0.71 16 39 H 0.41 9.58 7.83 -40.82 -0.32 9.27 16 40 H 0.09 1.73 5.90 -52.49 -0.31 1.42 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.86 8.29 -40.82 -0.34 6.52 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -32.45 349.30 -8.64 -41.09 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.34 Total: 11.47 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.47 Total: -3.88 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.16 Total: -57.80 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.45 -8.64 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164624050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.462 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds