Wall clock time and date at job start Tue Mar 31 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47377 * 2 1 4 4 C 1.46501 * 119.99845 * 84.66137 * 3 2 1 5 5 C 1.53005 * 109.47202 * 90.00081 * 4 3 2 6 6 C 1.34767 * 120.00058 * 264.39038 * 3 2 1 7 7 O 1.21282 * 119.99809 * 185.00331 * 6 3 2 8 8 C 1.50696 * 120.00204 * 5.00179 * 6 3 2 9 9 H 1.09005 * 109.46892 * 46.31369 * 8 6 3 10 10 C 1.53002 * 109.47261 * 286.31505 * 8 6 3 11 11 N 1.46508 * 109.47356 * 166.31101 * 8 6 3 12 12 C 1.38817 * 119.99902 * 205.00198 * 11 8 6 13 13 C 1.39799 * 119.58958 * 359.72633 * 12 11 8 14 14 C 1.38591 * 119.49323 * 179.78991 * 13 12 11 15 15 C 1.38391 * 118.67894 * 0.47855 * 14 13 12 16 16 C 1.40557 * 119.14894 * 359.74530 * 15 14 13 17 17 C 1.41314 * 119.78337 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00295 * 0.02983 * 17 16 15 19 19 C 1.40026 * 120.00349 * 180.02562 * 17 16 15 20 20 N 1.30748 * 119.99469 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00237 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47130 * 90.00579 * 21 19 17 23 23 H 1.48503 * 109.47213 * 210.00023 * 21 19 17 24 24 H 1.48494 * 109.47472 * 330.00254 * 21 19 17 25 25 N 1.31957 * 119.57899 * 180.02562 * 12 11 8 26 26 H 1.08996 * 109.47043 * 299.99997 * 1 2 3 27 27 H 1.09004 * 109.47033 * 60.00354 * 1 2 3 28 28 H 1.09004 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47500 * 239.99981 * 2 1 3 30 30 H 1.09001 * 109.46960 * 120.00403 * 2 1 3 31 31 H 1.08999 * 109.47125 * 210.00297 * 4 3 2 32 32 H 1.09005 * 109.47019 * 330.00843 * 4 3 2 33 33 H 1.08999 * 109.47257 * 300.00135 * 5 4 3 34 34 H 1.09001 * 109.46626 * 59.99966 * 5 4 3 35 35 H 1.08994 * 109.46899 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.46764 * 289.94861 * 10 8 6 37 37 H 1.08997 * 109.46959 * 49.95062 * 10 8 6 38 38 H 1.09003 * 109.47013 * 169.94993 * 10 8 6 39 39 H 0.96993 * 119.99260 * 25.00353 * 11 8 6 40 40 H 1.07999 * 120.24967 * 359.97438 * 13 12 11 41 41 H 1.07991 * 120.66122 * 180.22548 * 14 13 12 42 42 H 1.08001 * 120.42439 * 179.76585 * 15 14 13 43 43 H 0.97004 * 119.99698 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1513 2.1111 1.2633 5 6 3.5517 1.8864 1.8373 6 6 2.3506 1.9785 -1.1615 7 8 2.8399 3.0882 -1.1545 8 6 2.1141 1.2675 -2.4690 9 1 1.1118 0.8391 -2.4735 10 6 3.1468 0.1510 -2.6365 11 7 2.2425 2.2212 -3.5737 12 6 1.5921 1.9818 -4.7765 13 6 0.8215 0.8249 -4.9262 14 6 0.1695 0.5900 -6.1264 15 6 0.3109 1.5103 -7.1503 16 6 1.1034 2.6519 -6.9401 17 6 1.2574 3.6000 -7.9766 18 1 0.7667 3.4464 -8.9263 19 6 2.0463 4.7387 -7.7724 20 7 2.6408 4.9245 -6.6227 21 14 2.2493 5.9923 -9.1422 22 1 1.1808 7.0182 -9.0368 23 1 3.5771 6.6465 -9.0218 24 1 2.1516 5.3091 -10.4570 25 7 1.7138 2.8460 -5.7662 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9978 3.1756 1.0857 32 1 1.4060 1.7497 1.9719 33 1 3.7051 0.8220 2.0148 34 1 4.2970 2.2478 1.1287 35 1 3.6506 2.4299 2.7769 36 1 4.1298 0.5885 -2.8108 37 1 3.1747 -0.4567 -1.7321 38 1 2.8715 -0.4740 -3.4860 39 1 2.7819 3.0199 -3.4646 40 1 0.7326 0.1213 -4.1118 41 1 -0.4336 -0.2956 -6.2613 42 1 -0.1816 1.3534 -8.0985 43 1 3.1876 5.7132 -6.4814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164624050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:07 Heat of formation + Delta-G solvation = -11.974183 kcal Electronic energy + Delta-G solvation = -23620.704997 eV Core-core repulsion = 20279.322548 eV Total energy + Delta-G solvation = -3341.382449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47417 -40.00622 -37.41934 -36.91217 -35.22259 -33.38413 -32.43990 -31.76956 -30.44185 -29.62899 -27.33088 -25.81652 -24.55614 -23.57315 -23.38023 -21.96836 -20.15850 -19.20503 -18.75813 -17.74292 -17.26082 -16.58145 -16.54394 -16.27292 -15.87793 -15.49464 -15.02969 -14.88596 -14.71300 -14.52668 -14.29935 -14.01653 -13.64245 -13.55282 -13.41998 -13.37240 -12.95481 -12.81061 -12.77222 -12.69756 -12.58283 -12.47464 -12.18303 -11.94130 -11.77767 -11.68407 -11.34082 -10.86555 -10.66012 -9.85412 -9.76347 -9.42656 -8.34517 -8.21580 -6.47915 1.06303 1.35179 1.39850 1.47360 1.53976 1.58157 1.82846 2.24305 2.64076 2.92975 3.36961 3.95758 3.99863 4.02179 4.12670 4.19390 4.22644 4.40672 4.44348 4.48327 4.51161 4.64021 4.72875 4.78829 4.81750 4.92030 4.97564 4.99052 5.02452 5.04539 5.12720 5.23733 5.27798 5.34606 5.39785 5.60428 5.71930 5.97177 6.05489 6.22003 6.26028 6.54968 6.79697 6.90668 7.05786 7.19382 8.35586 8.52167 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.004037 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.207748 B = 6934.944477 C = 7858.101916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.083 3.917 3 N -0.603 5.603 4 C 0.107 3.893 5 C -0.160 4.160 6 C 0.509 3.491 7 O -0.578 6.578 8 C 0.145 3.855 9 H 0.111 0.889 10 C -0.160 4.160 11 N -0.726 5.726 12 C 0.396 3.604 13 C -0.361 4.361 14 C -0.026 4.026 15 C -0.342 4.342 16 C 0.259 3.741 17 C -0.473 4.473 18 H 0.089 0.911 19 C 0.024 3.976 20 N -0.756 5.756 21 Si 0.986 3.014 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.253 1.253 25 N -0.570 5.570 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.391 0.609 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.104 0.896 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -11.447 16.253 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.038 4.038 3 N -0.336 5.336 4 C -0.015 4.015 5 C -0.218 4.218 6 C 0.297 3.703 7 O -0.457 6.457 8 C 0.036 3.964 9 H 0.129 0.871 10 C -0.219 4.219 11 N -0.361 5.361 12 C 0.156 3.844 13 C -0.386 4.386 14 C -0.050 4.050 15 C -0.365 4.365 16 C 0.132 3.868 17 C -0.505 4.505 18 H 0.107 0.893 19 C -0.197 4.197 20 N -0.378 5.378 21 Si 0.807 3.193 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.176 1.176 25 N -0.292 5.292 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.226 0.774 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.122 0.878 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.528 -10.174 16.614 19.488 hybrid contribution -0.121 0.560 -0.785 0.972 sum -0.649 -9.614 15.829 18.531 Atomic orbital electron populations 1.22209 0.95152 1.03731 1.01869 1.22232 0.95229 0.80483 1.05895 1.48086 1.64349 1.15681 1.05472 1.21566 0.98883 0.96688 0.84382 1.22063 0.95852 1.03012 1.00867 1.20974 0.77060 0.85630 0.86630 1.90675 1.45206 1.22157 1.87675 1.20764 1.02283 0.89941 0.83456 0.87141 1.22377 0.97860 0.97315 1.04329 1.44163 1.55384 1.26460 1.10140 1.18908 0.88589 0.90224 0.86709 1.20968 1.14192 1.02333 1.01143 1.21033 0.94997 0.96967 0.92038 1.21709 1.12944 1.00716 1.01129 1.18684 0.87365 0.91171 0.89594 1.19967 1.26937 1.04283 0.99309 0.89325 1.27012 0.93593 1.00469 0.98668 1.70292 1.19309 1.24216 1.24013 0.85159 0.78361 0.77434 0.78383 1.18868 1.19582 1.17604 1.68137 1.29292 1.30780 1.01023 0.91932 0.94347 0.88921 0.88421 0.87005 0.92796 0.87170 0.90683 0.95185 0.90081 0.93463 0.87611 0.90700 0.77448 0.85414 0.84657 0.87827 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.18 71.98 0.73 -1.46 16 2 C 0.08 1.08 5.57 86.38 0.48 1.56 16 3 N -0.60 -13.02 2.47 -821.81 -2.03 -15.05 16 4 C 0.11 2.01 6.11 86.38 0.53 2.53 16 5 C -0.16 -2.65 10.24 71.98 0.74 -1.92 16 6 C 0.51 16.23 6.99 87.66 0.61 16.85 16 7 O -0.58 -24.00 15.49 -3.04 -0.05 -24.04 16 8 C 0.14 4.65 1.84 44.24 0.08 4.73 16 9 H 0.11 3.23 5.19 -2.38 -0.01 3.22 16 10 C -0.16 -4.15 8.94 71.98 0.64 -3.51 16 11 N -0.73 -32.38 5.18 -328.00 -1.70 -34.08 16 12 C 0.40 20.12 7.63 133.42 1.02 21.14 16 13 C -0.36 -15.81 8.92 22.73 0.20 -15.61 16 14 C -0.03 -1.16 10.15 22.39 0.23 -0.93 16 15 C -0.34 -17.55 9.83 22.87 0.22 -17.32 16 16 C 0.26 15.22 6.55 40.18 0.26 15.48 16 17 C -0.47 -27.19 9.14 23.46 0.21 -26.98 16 18 H 0.09 4.74 7.85 -2.91 -0.02 4.72 16 19 C 0.02 1.30 5.50 85.29 0.47 1.77 16 20 N -0.76 -43.93 11.46 21.84 0.25 -43.68 16 21 Si 0.99 40.65 29.56 68.60 2.03 42.68 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 25 N -0.57 -33.79 7.89 -186.59 -1.47 -35.26 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.04 0.69 7.38 -2.38 -0.02 0.67 16 28 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.10 1.22 4.14 -2.39 -0.01 1.21 16 30 H 0.11 0.80 8.11 -2.39 -0.02 0.78 16 31 H 0.05 1.33 7.50 -2.39 -0.02 1.32 16 32 H 0.11 1.31 8.07 -2.38 -0.02 1.29 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.82 5.56 -2.39 -0.01 1.81 16 38 H 0.07 1.98 7.57 -2.39 -0.02 1.96 16 39 H 0.39 19.62 7.83 -92.71 -0.73 18.90 16 40 H 0.13 4.51 5.90 -2.91 -0.02 4.49 16 41 H 0.14 4.73 8.06 -2.92 -0.02 4.71 16 42 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.27 14.59 8.29 -92.71 -0.77 13.82 16 Total: -1.00 -76.58 349.30 3.76 -72.83 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: 0.29 Total: 40.28 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 6.43 Total: -3.66 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -4.95 Total: -128.08 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -76.58 3.76 -72.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164624050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.853 kcal (2) G-P(sol) polarization free energy of solvation -76.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds