Wall clock time and date at job start Tue Mar 31 2020 06:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47367 * 2 1 4 4 C 1.46496 * 120.00015 * 271.01744 * 3 2 1 5 5 C 1.53001 * 109.46926 * 263.49236 * 4 3 2 6 6 C 1.34775 * 119.99788 * 91.01724 * 3 2 1 7 7 O 1.21277 * 120.00377 * 3.58389 * 6 3 2 8 8 C 1.50703 * 119.99868 * 183.58478 * 6 3 2 9 9 H 1.08999 * 109.47407 * 311.00954 * 8 6 3 10 10 C 1.53005 * 109.47090 * 71.00803 * 8 6 3 11 11 N 1.46500 * 109.47338 * 191.00256 * 8 6 3 12 12 C 1.39718 * 119.99944 * 154.99761 * 11 8 6 13 13 C 1.39333 * 120.36535 * 0.02562 * 12 11 8 14 14 N 1.31982 * 121.21201 * 180.02562 * 13 12 11 15 15 C 1.31496 * 122.05895 * 0.02562 * 14 13 12 16 16 C 1.40772 * 120.55944 * 0.02562 * 15 14 13 17 17 C 1.41421 * 120.61715 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00391 * 18.47043 * 17 16 15 19 19 C 1.39934 * 119.99741 * 198.47005 * 17 16 15 20 20 N 1.30829 * 119.99969 * 21.06921 * 19 17 16 21 21 Si 1.86806 * 120.00077 * 201.06620 * 19 17 16 22 22 H 1.48502 * 109.47086 * 90.00151 * 21 19 17 23 23 H 1.48495 * 109.47246 * 209.99992 * 21 19 17 24 24 H 1.48503 * 109.47082 * 330.00240 * 21 19 17 25 25 C 1.38662 * 120.36267 * 179.73130 * 12 11 8 26 26 H 1.09001 * 109.47332 * 59.99844 * 1 2 3 27 27 H 1.08994 * 109.47622 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47365 * 300.00047 * 1 2 3 29 29 H 1.09003 * 109.46873 * 239.99758 * 2 1 3 30 30 H 1.08999 * 109.46857 * 120.00383 * 2 1 3 31 31 H 1.09000 * 109.47128 * 23.48861 * 4 3 2 32 32 H 1.08996 * 109.46971 * 143.49218 * 4 3 2 33 33 H 1.08996 * 109.47311 * 60.00190 * 5 4 3 34 34 H 1.09002 * 109.47329 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.46912 * 299.99758 * 5 4 3 36 36 H 1.09001 * 109.47142 * 294.28588 * 10 8 6 37 37 H 1.08998 * 109.47003 * 54.28510 * 10 8 6 38 38 H 1.08992 * 109.47144 * 174.28824 * 10 8 6 39 39 H 0.97001 * 120.00339 * 335.00882 * 11 8 6 40 40 H 1.08004 * 119.39488 * 0.02562 * 13 12 11 41 41 H 1.07995 * 119.72390 * 180.02562 * 15 14 13 42 42 H 0.97006 * 119.99902 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.92882 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2413 2.0793 -1.2685 5 6 3.7185 1.9776 -1.6538 6 6 2.2625 2.0096 1.1670 7 8 2.1404 1.4115 2.2150 8 6 2.6873 3.4555 1.1698 9 1 3.5015 3.5964 0.4589 10 6 1.5020 4.3360 0.7686 11 7 3.1406 3.8288 2.5119 12 6 4.0411 4.8842 2.6767 13 6 4.5126 5.5872 1.5700 14 7 5.3639 6.5865 1.7063 15 6 5.8091 6.9685 2.8831 16 6 5.3863 6.3137 4.0554 17 6 5.8647 6.7232 5.3216 18 1 6.3082 7.7007 5.4411 19 6 5.7636 5.8618 6.4198 20 7 5.6252 4.5746 6.2309 21 14 5.8261 6.5498 8.1554 22 1 4.4508 6.8832 8.6056 23 1 6.4139 5.5370 9.0685 24 1 6.6633 7.7763 8.1718 25 6 4.4708 5.2475 3.9440 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.6305 1.6222 -2.0470 32 1 1.9657 3.1281 -1.1593 33 1 3.9941 0.9287 -1.7630 34 1 3.8846 2.4973 -2.5974 35 1 4.3293 2.4346 -0.8753 36 1 1.2294 4.1289 -0.2663 37 1 0.6534 4.1208 1.4179 38 1 1.7789 5.3854 0.8683 39 1 2.8156 3.3432 3.2862 40 1 4.1752 5.3092 0.5823 41 1 6.5049 7.7916 2.9510 42 1 5.5554 3.9775 6.9922 43 1 4.1187 4.7243 4.8208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164624213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:14 Heat of formation + Delta-G solvation = -7.386575 kcal Electronic energy + Delta-G solvation = -23560.427708 eV Core-core repulsion = 20219.244193 eV Total energy + Delta-G solvation = -3341.183515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31226 -38.31963 -36.35400 -35.46472 -33.94685 -32.53705 -30.99881 -30.11579 -29.40739 -27.44123 -25.54865 -24.75214 -23.74781 -22.36040 -21.83832 -20.43686 -18.99552 -17.52799 -17.08428 -16.64024 -15.76693 -15.46461 -15.24753 -14.80763 -14.62163 -14.32711 -13.96763 -13.75102 -13.31238 -13.25037 -12.86422 -12.76342 -12.68010 -12.43241 -12.11696 -12.04802 -11.94947 -11.61193 -11.55078 -11.47884 -11.20359 -11.12770 -10.98515 -10.80024 -10.49653 -9.88952 -9.70937 -9.48395 -9.26784 -8.81813 -8.03106 -7.77905 -6.84256 -6.37699 -4.43371 2.63617 2.76109 2.82761 3.05846 3.09402 3.17291 3.29027 3.89214 4.17969 4.42349 4.65248 4.69692 4.91026 4.91364 5.11641 5.12693 5.20114 5.24130 5.34426 5.44332 5.54673 5.62139 5.72628 5.81085 5.83204 5.87925 5.98423 6.05981 6.14051 6.33686 6.44701 6.59268 6.68003 6.92893 7.12568 7.18431 7.24760 7.61602 7.74449 8.01175 8.15251 8.23318 8.52518 8.64471 8.79256 8.91149 9.78875 10.09181 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.003910 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.379801 B = 7159.311257 C = 7972.998956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.110 3.890 3 N -0.614 5.614 4 C 0.093 3.907 5 C -0.177 4.177 6 C 0.515 3.485 7 O -0.531 6.531 8 C 0.141 3.859 9 H 0.099 0.901 10 C -0.167 4.167 11 N -0.737 5.737 12 C 0.179 3.821 13 C -0.107 4.107 14 N -0.443 5.443 15 C -0.056 4.056 16 C 0.095 3.905 17 C -0.448 4.448 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.777 5.777 21 Si 0.909 3.091 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.260 1.260 25 C -0.215 4.215 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.400 0.600 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.282 0.718 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.919 -7.632 -11.994 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.013 4.013 3 N -0.349 5.349 4 C -0.030 4.030 5 C -0.235 4.235 6 C 0.303 3.697 7 O -0.407 6.407 8 C 0.030 3.970 9 H 0.117 0.883 10 C -0.226 4.226 11 N -0.373 5.373 12 C 0.079 3.921 13 C -0.266 4.266 14 N -0.150 5.150 15 C -0.221 4.221 16 C 0.090 3.910 17 C -0.478 4.478 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.401 5.401 21 Si 0.733 3.267 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.184 1.184 25 C -0.246 4.246 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.237 0.763 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.093 0.907 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.736 -7.789 -12.253 16.945 hybrid contribution -0.380 -0.586 1.762 1.896 sum -9.116 -8.375 -10.491 16.226 Atomic orbital electron populations 1.22129 0.95981 1.02064 1.02293 1.21398 0.94223 0.82531 1.03131 1.47990 1.66646 1.14191 1.06080 1.21869 0.97051 0.98750 0.85329 1.22278 0.96307 1.02548 1.02358 1.21003 0.76151 0.89320 0.83248 1.90672 1.51391 1.67358 1.31264 1.20541 0.97802 0.89571 0.89056 0.88350 1.22389 0.97864 1.01632 1.00700 1.44171 1.50963 1.37077 1.05053 1.18642 0.89925 0.87995 0.95587 1.21165 1.08595 1.01670 0.95163 1.66792 1.08191 1.11859 1.28150 1.22258 1.06715 1.05511 0.87569 1.18256 0.88842 0.90418 0.93474 1.19591 1.34189 1.01640 0.92342 0.89868 1.25998 0.92182 0.94196 1.01939 1.69854 1.33082 1.03442 1.33760 0.86296 0.79582 0.79908 0.80894 1.19183 1.20285 1.18397 1.21155 1.04365 1.04845 0.94195 0.92634 0.91717 0.92254 0.90751 0.89808 0.90118 0.89254 0.92338 0.91110 0.91784 0.91637 0.92247 0.90294 0.76337 0.86969 0.86023 0.90677 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.11 1.09 6.14 -4.05 -0.02 1.07 16 3 N -0.61 -7.06 2.49 -173.69 -0.43 -7.49 16 4 C 0.09 0.79 5.77 -4.04 -0.02 0.76 16 5 C -0.18 -1.55 10.05 37.16 0.37 -1.18 16 6 C 0.52 7.97 6.95 -10.99 -0.08 7.89 16 7 O -0.53 -10.15 15.38 5.56 0.09 -10.06 16 8 C 0.14 2.22 1.87 -69.08 -0.13 2.10 16 9 H 0.10 1.52 4.43 -51.93 -0.23 1.29 16 10 C -0.17 -2.22 9.16 37.16 0.34 -1.88 16 11 N -0.74 -14.84 5.18 -53.23 -0.28 -15.12 16 12 C 0.18 4.23 6.65 -83.70 -0.56 3.68 16 13 C -0.11 -2.49 10.06 -17.08 -0.17 -2.66 16 14 N -0.44 -11.13 10.33 -12.37 -0.13 -11.26 16 15 C -0.06 -1.44 10.97 -16.74 -0.18 -1.62 16 16 C 0.10 2.58 5.63 -106.69 -0.60 1.97 16 17 C -0.45 -11.79 9.08 -37.74 -0.34 -12.13 16 18 H 0.08 2.08 7.93 -52.48 -0.42 1.66 16 19 C 0.08 1.91 5.15 -17.34 -0.09 1.82 16 20 N -0.78 -20.08 10.83 55.55 0.60 -19.47 16 21 Si 0.91 18.48 29.61 -169.99 -5.03 13.45 16 22 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 C -0.22 -5.68 8.72 -38.39 -0.33 -6.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.08 1.00 7.35 -51.93 -0.38 0.62 16 31 H 0.08 0.50 8.02 -51.93 -0.42 0.08 16 32 H 0.09 0.73 4.35 -51.93 -0.23 0.51 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.72 6.64 -51.93 -0.35 0.37 16 36 H 0.07 0.66 5.46 -51.93 -0.28 0.37 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.17 7.83 -51.93 -0.41 0.76 16 39 H 0.40 8.44 7.74 -40.82 -0.32 8.12 16 40 H 0.11 2.27 6.20 -52.48 -0.33 1.95 16 41 H 0.12 2.93 8.06 -52.49 -0.42 2.50 16 42 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.13 3.50 5.99 -52.49 -0.31 3.19 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -30.67 346.79 -7.57 -38.23 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -6.17 Total: 13.76 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.44 Total: -7.27 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.23 Total: -53.34 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.67 -7.57 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164624213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.848 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds