Wall clock time and date at job start Tue Mar 31 2020 06:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47367 * 2 1 4 4 C 1.46496 * 120.00015 * 271.01744 * 3 2 1 5 5 C 1.53001 * 109.46926 * 263.49236 * 4 3 2 6 6 C 1.34775 * 119.99788 * 91.01724 * 3 2 1 7 7 O 1.21277 * 120.00377 * 3.58389 * 6 3 2 8 8 C 1.50703 * 119.99868 * 183.58478 * 6 3 2 9 9 H 1.08999 * 109.47407 * 311.00954 * 8 6 3 10 10 C 1.53005 * 109.47090 * 71.00803 * 8 6 3 11 11 N 1.46500 * 109.47338 * 191.00256 * 8 6 3 12 12 C 1.39718 * 119.99944 * 154.99761 * 11 8 6 13 13 C 1.39333 * 120.36535 * 0.02562 * 12 11 8 14 14 N 1.31982 * 121.21201 * 180.02562 * 13 12 11 15 15 C 1.31496 * 122.05895 * 0.02562 * 14 13 12 16 16 C 1.40772 * 120.55944 * 0.02562 * 15 14 13 17 17 C 1.41421 * 120.61715 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00391 * 18.47043 * 17 16 15 19 19 C 1.39934 * 119.99741 * 198.47005 * 17 16 15 20 20 N 1.30829 * 119.99969 * 21.06921 * 19 17 16 21 21 Si 1.86806 * 120.00077 * 201.06620 * 19 17 16 22 22 H 1.48502 * 109.47086 * 90.00151 * 21 19 17 23 23 H 1.48495 * 109.47246 * 209.99992 * 21 19 17 24 24 H 1.48503 * 109.47082 * 330.00240 * 21 19 17 25 25 C 1.38662 * 120.36267 * 179.73130 * 12 11 8 26 26 H 1.09001 * 109.47332 * 59.99844 * 1 2 3 27 27 H 1.08994 * 109.47622 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47365 * 300.00047 * 1 2 3 29 29 H 1.09003 * 109.46873 * 239.99758 * 2 1 3 30 30 H 1.08999 * 109.46857 * 120.00383 * 2 1 3 31 31 H 1.09000 * 109.47128 * 23.48861 * 4 3 2 32 32 H 1.08996 * 109.46971 * 143.49218 * 4 3 2 33 33 H 1.08996 * 109.47311 * 60.00190 * 5 4 3 34 34 H 1.09002 * 109.47329 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.46912 * 299.99758 * 5 4 3 36 36 H 1.09001 * 109.47142 * 294.28588 * 10 8 6 37 37 H 1.08998 * 109.47003 * 54.28510 * 10 8 6 38 38 H 1.08992 * 109.47144 * 174.28824 * 10 8 6 39 39 H 0.97001 * 120.00339 * 335.00882 * 11 8 6 40 40 H 1.08004 * 119.39488 * 0.02562 * 13 12 11 41 41 H 1.07995 * 119.72390 * 180.02562 * 15 14 13 42 42 H 0.97006 * 119.99902 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.92882 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2413 2.0793 -1.2685 5 6 3.7185 1.9776 -1.6538 6 6 2.2625 2.0096 1.1670 7 8 2.1404 1.4115 2.2150 8 6 2.6873 3.4555 1.1698 9 1 3.5015 3.5964 0.4589 10 6 1.5020 4.3360 0.7686 11 7 3.1406 3.8288 2.5119 12 6 4.0411 4.8842 2.6767 13 6 4.5126 5.5872 1.5700 14 7 5.3639 6.5865 1.7063 15 6 5.8091 6.9685 2.8831 16 6 5.3863 6.3137 4.0554 17 6 5.8647 6.7232 5.3216 18 1 6.3082 7.7007 5.4411 19 6 5.7636 5.8618 6.4198 20 7 5.6252 4.5746 6.2309 21 14 5.8261 6.5498 8.1554 22 1 4.4508 6.8832 8.6056 23 1 6.4139 5.5370 9.0685 24 1 6.6633 7.7763 8.1718 25 6 4.4708 5.2475 3.9440 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.6305 1.6222 -2.0470 32 1 1.9657 3.1281 -1.1593 33 1 3.9941 0.9287 -1.7630 34 1 3.8846 2.4973 -2.5974 35 1 4.3293 2.4346 -0.8753 36 1 1.2294 4.1289 -0.2663 37 1 0.6534 4.1208 1.4179 38 1 1.7789 5.3854 0.8683 39 1 2.8156 3.3432 3.2862 40 1 4.1752 5.3092 0.5823 41 1 6.5049 7.7916 2.9510 42 1 5.5554 3.9775 6.9922 43 1 4.1187 4.7243 4.8208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164624213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:13 Heat of formation + Delta-G solvation = -26.886305 kcal Electronic energy + Delta-G solvation = -23561.273280 eV Core-core repulsion = 20219.244193 eV Total energy + Delta-G solvation = -3342.029087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49841 -40.15032 -37.44638 -36.97846 -35.85136 -33.56329 -32.40100 -31.89854 -30.32639 -29.08001 -27.49400 -25.85941 -24.50154 -23.86709 -23.46217 -22.11856 -20.13865 -19.20123 -18.51929 -17.86682 -17.32715 -17.04315 -16.68104 -16.38699 -16.01191 -15.67966 -15.00486 -14.86420 -14.68979 -14.53715 -14.34314 -13.98826 -13.61814 -13.51560 -13.47404 -13.41988 -13.24044 -13.11996 -12.93349 -12.83637 -12.61418 -12.50717 -12.16227 -11.96049 -11.79479 -11.65878 -11.29661 -11.15853 -10.82796 -10.00821 -9.78233 -9.76288 -8.72859 -8.16827 -6.43845 0.93167 1.19606 1.38291 1.45425 1.52671 1.55798 1.82838 2.18102 2.66522 2.74716 3.35103 3.80791 3.90545 4.02230 4.10478 4.13942 4.20321 4.29883 4.42544 4.44222 4.51817 4.65488 4.69718 4.71917 4.76596 4.86219 4.92927 4.95969 4.98209 5.03904 5.17061 5.22238 5.26464 5.27927 5.37415 5.58900 5.70000 5.85849 6.01407 6.21880 6.33970 6.69299 6.75661 6.83513 6.97969 7.04960 7.81968 8.22925 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.003910 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.379801 B = 7159.311257 C = 7972.998956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 N -0.603 5.603 4 C 0.086 3.914 5 C -0.175 4.175 6 C 0.511 3.489 7 O -0.579 6.579 8 C 0.136 3.864 9 H 0.107 0.893 10 C -0.159 4.159 11 N -0.737 5.737 12 C 0.189 3.811 13 C -0.106 4.106 14 N -0.447 5.447 15 C -0.080 4.080 16 C 0.072 3.928 17 C -0.479 4.479 18 H 0.088 0.912 19 C 0.037 3.963 20 N -0.810 5.810 21 Si 0.986 3.014 22 H -0.263 1.263 23 H -0.268 1.268 24 H -0.252 1.252 25 C -0.246 4.246 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.034 0.966 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.393 0.607 40 H 0.147 0.853 41 H 0.131 0.869 42 H 0.289 0.711 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -8.053 -13.966 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 N -0.335 5.335 4 C -0.035 4.035 5 C -0.233 4.233 6 C 0.299 3.701 7 O -0.459 6.459 8 C 0.027 3.973 9 H 0.124 0.876 10 C -0.217 4.217 11 N -0.369 5.369 12 C 0.086 3.914 13 C -0.266 4.266 14 N -0.154 5.154 15 C -0.243 4.243 16 C 0.067 3.933 17 C -0.508 4.508 18 H 0.106 0.894 19 C -0.181 4.181 20 N -0.434 5.434 21 Si 0.806 3.194 22 H -0.188 1.188 23 H -0.193 1.193 24 H -0.175 1.175 25 C -0.277 4.277 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.054 0.946 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.228 0.772 40 H 0.164 0.836 41 H 0.149 0.851 42 H 0.100 0.900 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.795 -8.225 -14.310 19.193 hybrid contribution -0.104 -0.589 2.202 2.282 sum -9.899 -8.814 -12.108 17.952 Atomic orbital electron populations 1.22071 0.94722 1.03105 1.01831 1.21595 0.95218 0.81500 1.03442 1.48087 1.64800 1.14719 1.05927 1.22179 0.97588 0.99189 0.84512 1.22269 0.95860 1.02770 1.02447 1.20933 0.76191 0.89060 0.83884 1.90656 1.53890 1.68118 1.33198 1.20832 0.99042 0.90744 0.86701 0.87559 1.22325 0.96272 1.00017 1.03082 1.44300 1.49897 1.35792 1.06944 1.18679 0.89597 0.88310 0.94838 1.21655 1.07683 1.00808 0.96405 1.66822 1.08474 1.12352 1.27768 1.22397 1.07849 1.06437 0.87664 1.18575 0.89363 0.90991 0.94381 1.19894 1.35452 1.02294 0.93181 0.89440 1.26906 0.91029 0.94130 1.05996 1.69916 1.33315 1.04778 1.35378 0.85137 0.79706 0.79401 0.75111 1.18815 1.19305 1.17497 1.21129 1.05871 1.05845 0.94878 0.90637 0.90040 0.95013 0.87383 0.92539 0.86444 0.88684 0.92107 0.88860 0.94646 0.87529 0.92818 0.91543 0.77189 0.83605 0.85141 0.89981 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 10.24 71.98 0.74 -1.66 16 2 C 0.10 1.86 6.14 86.38 0.53 2.39 16 3 N -0.60 -12.55 2.49 -821.84 -2.04 -14.60 16 4 C 0.09 1.13 5.77 86.38 0.50 1.63 16 5 C -0.18 -2.54 10.05 71.98 0.72 -1.82 16 6 C 0.51 15.57 6.95 87.66 0.61 16.18 16 7 O -0.58 -22.75 15.38 -3.02 -0.05 -22.79 16 8 C 0.14 4.17 1.87 44.25 0.08 4.25 16 9 H 0.11 3.10 4.43 -2.39 -0.01 3.09 16 10 C -0.16 -3.91 9.16 71.98 0.66 -3.25 16 11 N -0.74 -30.20 5.18 -322.31 -1.67 -31.87 16 12 C 0.19 9.09 6.65 38.25 0.25 9.34 16 13 C -0.11 -4.87 10.06 84.93 0.85 -4.02 16 14 N -0.45 -22.50 10.33 -193.05 -1.99 -24.49 16 15 C -0.08 -4.21 10.97 85.36 0.94 -3.28 16 16 C 0.07 4.04 5.63 -21.21 -0.12 3.92 16 17 C -0.48 -26.00 9.08 23.46 0.21 -25.79 16 18 H 0.09 4.49 7.93 -2.91 -0.02 4.46 16 19 C 0.04 1.85 5.15 85.25 0.44 2.29 16 20 N -0.81 -43.12 10.83 21.82 0.24 -42.88 16 21 Si 0.99 38.20 29.61 68.60 2.03 40.23 16 22 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 24 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 25 C -0.25 -13.53 8.72 23.04 0.20 -13.33 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 1.22 8.08 -2.39 -0.02 1.20 16 30 H 0.06 1.34 7.35 -2.39 -0.02 1.32 16 31 H 0.12 0.78 8.02 -2.39 -0.02 0.76 16 32 H 0.10 1.15 4.35 -2.39 -0.01 1.14 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.03 0.72 6.64 -2.39 -0.02 0.71 16 36 H 0.11 1.73 5.46 -2.39 -0.01 1.72 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.84 7.83 -2.39 -0.02 1.82 16 39 H 0.39 17.31 7.74 -92.71 -0.72 16.59 16 40 H 0.15 5.61 6.20 -2.91 -0.02 5.59 16 41 H 0.13 6.45 8.06 -2.91 -0.02 6.43 16 42 H 0.29 13.98 8.30 -92.70 -0.77 13.21 16 43 H 0.11 6.39 5.99 -2.91 -0.02 6.37 16 Total: -1.00 -70.13 346.79 3.44 -66.69 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: 0.31 Total: 42.86 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 6.62 Total: -13.14 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -5.47 Total: -113.85 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -70.13 3.44 -66.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164624213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.807 kcal (2) G-P(sol) polarization free energy of solvation -70.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds