Wall clock time and date at job start Tue Mar 31 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47471 * 2 1 4 4 C 1.46500 * 119.99822 * 270.00228 * 3 2 1 5 5 C 1.53004 * 109.46960 * 276.14461 * 4 3 2 6 6 C 1.34779 * 120.00032 * 89.99468 * 3 2 1 7 7 O 1.21285 * 119.99795 * 6.48325 * 6 3 2 8 8 C 1.50698 * 119.99839 * 186.48111 * 6 3 2 9 9 H 1.08993 * 109.47091 * 48.75113 * 8 6 3 10 10 C 1.52999 * 109.47078 * 288.74794 * 8 6 3 11 11 N 1.46504 * 109.46830 * 168.75056 * 8 6 3 12 12 C 1.39712 * 119.99565 * 204.99767 * 11 8 6 13 13 C 1.39335 * 120.36891 * 359.97438 * 12 11 8 14 14 N 1.31984 * 121.20785 * 179.97438 * 13 12 11 15 15 C 1.31495 * 122.06327 * 0.02562 * 14 13 12 16 16 C 1.40763 * 120.56337 * 0.02562 * 15 14 13 17 17 C 1.41419 * 120.62439 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99812 * 26.45137 * 17 16 15 19 19 C 1.39938 * 119.99977 * 206.45948 * 17 16 15 20 20 N 1.30823 * 119.99689 * 11.28645 * 19 17 16 21 21 Si 1.86800 * 119.99999 * 191.28982 * 19 17 16 22 22 H 1.48497 * 109.47152 * 94.98415 * 21 19 17 23 23 H 1.48496 * 109.46944 * 214.98552 * 21 19 17 24 24 H 1.48502 * 109.46897 * 334.98626 * 21 19 17 25 25 C 1.38657 * 120.35976 * 179.72699 * 12 11 8 26 26 H 1.08999 * 109.47228 * 300.00134 * 1 2 3 27 27 H 1.09005 * 109.47174 * 59.99739 * 1 2 3 28 28 H 1.09001 * 109.47638 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46912 * 239.99453 * 2 1 3 30 30 H 1.09001 * 109.46760 * 120.00009 * 2 1 3 31 31 H 1.09001 * 109.47417 * 36.14589 * 4 3 2 32 32 H 1.08996 * 109.47008 * 156.14598 * 4 3 2 33 33 H 1.08993 * 109.47287 * 186.60698 * 5 4 3 34 34 H 1.09002 * 109.47275 * 306.61592 * 5 4 3 35 35 H 1.09004 * 109.47044 * 66.60503 * 5 4 3 36 36 H 1.08996 * 109.46969 * 186.78044 * 10 8 6 37 37 H 1.09006 * 109.47012 * 66.78575 * 10 8 6 38 38 H 1.08998 * 109.47405 * 306.78594 * 10 8 6 39 39 H 0.96997 * 120.00030 * 25.00370 * 11 8 6 40 40 H 1.07998 * 119.39493 * 359.97438 * 13 12 11 41 41 H 1.07996 * 119.71664 * 179.97438 * 15 14 13 42 42 H 0.97008 * 119.99574 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.93463 * 359.97418 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6552 1.7079 -1.7877 6 6 2.2430 2.0166 1.1672 7 8 2.1545 1.4108 2.2142 8 6 2.6041 3.4796 1.1713 9 1 1.9056 4.0280 0.5394 10 6 4.0253 3.6556 0.6329 11 7 2.5331 3.9962 2.5404 12 6 2.3053 5.3566 2.7627 13 6 2.1450 6.2288 1.6880 14 7 1.9285 7.5167 1.8789 15 6 1.8537 8.0411 3.0825 16 6 2.0049 7.2338 4.2256 17 6 1.9241 7.7963 5.5206 18 1 1.3498 8.6964 5.6835 19 6 2.5885 7.1869 6.5909 20 7 3.4568 6.2348 6.3649 21 14 2.2353 7.7327 8.3421 22 1 1.2043 6.8460 8.9386 23 1 3.4814 7.6536 9.1460 24 1 1.7396 9.1325 8.3338 25 6 2.2311 5.8527 4.0554 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5120 1.7676 -1.9983 32 1 2.2027 3.1489 -1.1135 33 1 3.8837 2.3094 -2.6674 34 1 4.3948 1.9037 -1.0113 35 1 3.6791 0.6511 -2.0538 36 1 4.3311 4.6956 0.7474 37 1 4.0503 3.3838 -0.4225 38 1 4.7071 3.0130 1.1898 39 1 2.6444 3.3938 3.2925 40 1 2.1989 5.8440 0.6804 41 1 1.6756 9.1004 3.1948 42 1 3.9171 5.8121 7.1069 43 1 2.3470 5.2000 4.9080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164624214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:17 Heat of formation + Delta-G solvation = -24.855773 kcal Electronic energy + Delta-G solvation = -23510.226643 eV Core-core repulsion = 20168.285606 eV Total energy + Delta-G solvation = -3341.941037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51251 -40.17258 -37.46452 -37.00097 -35.79396 -33.67666 -32.33180 -31.75535 -30.53061 -29.06237 -27.47990 -25.73311 -24.43286 -23.92144 -23.53318 -22.18468 -19.95209 -19.19273 -18.60148 -17.85486 -17.32717 -17.18781 -16.64906 -16.35148 -16.09352 -15.40373 -15.21933 -14.97825 -14.62512 -14.54999 -14.45078 -13.91993 -13.61500 -13.54457 -13.40095 -13.30410 -13.17914 -13.07525 -12.89385 -12.77674 -12.60254 -12.39735 -12.16113 -11.96574 -11.88388 -11.70753 -11.28785 -11.19497 -10.82723 -10.03177 -9.77863 -9.67367 -8.65348 -8.16459 -6.45889 0.92503 1.18240 1.39128 1.44798 1.52638 1.54824 1.82189 2.20240 2.65753 2.80517 3.35244 3.78539 3.88540 4.05452 4.13152 4.14550 4.21312 4.27760 4.42767 4.48836 4.56804 4.60003 4.66460 4.72825 4.74092 4.84531 4.92690 4.96327 4.99420 5.03597 5.17538 5.18876 5.25164 5.28537 5.45594 5.57536 5.68837 5.84900 6.02725 6.22196 6.34433 6.71345 6.75207 6.84763 6.96813 7.04374 7.79197 8.31184 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.003761 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.237927 B = 7443.774079 C = 8022.351578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.603 5.603 4 C 0.088 3.912 5 C -0.178 4.178 6 C 0.512 3.488 7 O -0.578 6.578 8 C 0.138 3.862 9 H 0.110 0.890 10 C -0.167 4.167 11 N -0.736 5.736 12 C 0.185 3.815 13 C -0.097 4.097 14 N -0.450 5.450 15 C -0.072 4.072 16 C 0.072 3.928 17 C -0.483 4.483 18 H 0.085 0.915 19 C 0.032 3.968 20 N -0.823 5.823 21 Si 0.989 3.011 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.253 1.253 25 C -0.230 4.230 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.393 0.607 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.287 0.713 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 -12.214 -14.976 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.336 5.336 4 C -0.033 4.033 5 C -0.235 4.235 6 C 0.300 3.700 7 O -0.458 6.458 8 C 0.030 3.970 9 H 0.127 0.873 10 C -0.226 4.226 11 N -0.369 5.369 12 C 0.082 3.918 13 C -0.257 4.257 14 N -0.157 5.157 15 C -0.236 4.236 16 C 0.067 3.933 17 C -0.513 4.513 18 H 0.104 0.896 19 C -0.183 4.183 20 N -0.449 5.449 21 Si 0.809 3.191 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.177 1.177 25 C -0.262 4.262 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.131 0.869 38 H 0.069 0.931 39 H 0.228 0.772 40 H 0.167 0.833 41 H 0.150 0.850 42 H 0.097 0.903 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.570 -12.210 -15.300 19.583 hybrid contribution 0.157 -0.584 2.223 2.304 sum -0.414 -12.793 -13.077 18.299 Atomic orbital electron populations 1.22097 0.95402 1.03089 1.01497 1.21561 0.94665 0.81593 1.03707 1.48077 1.64801 1.14798 1.05903 1.22038 0.99084 0.98090 0.84106 1.22395 0.95720 1.03239 1.02175 1.20915 0.75817 0.89406 0.83866 1.90656 1.53496 1.68384 1.33251 1.20756 0.99853 0.90819 0.85621 0.87294 1.22561 0.93844 1.02935 1.03233 1.44310 1.81373 1.04924 1.06288 1.18697 0.94055 0.84430 0.94613 1.21733 1.18146 0.89038 0.96772 1.66854 1.08929 1.13747 1.26207 1.22488 1.14599 0.98896 0.87595 1.18597 0.88394 0.91685 0.94627 1.19866 1.28186 1.10600 0.92658 0.89649 1.26845 0.92197 0.93523 1.05732 1.69882 1.18746 1.20715 1.35557 0.85087 0.78729 0.79957 0.75320 1.19007 1.19323 1.17652 1.21134 1.14969 0.95860 0.94195 0.95505 0.91011 0.89827 0.87064 0.92114 0.87597 0.89420 0.89043 0.92661 0.91463 0.92064 0.86874 0.93148 0.77153 0.83350 0.85028 0.90263 0.87287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 10.24 71.98 0.74 -1.97 16 2 C 0.11 1.86 6.20 86.38 0.54 2.39 16 3 N -0.60 -12.24 2.47 -821.80 -2.03 -14.27 16 4 C 0.09 1.10 5.60 86.38 0.48 1.58 16 5 C -0.18 -1.77 9.21 71.98 0.66 -1.10 16 6 C 0.51 15.26 7.02 87.66 0.62 15.87 16 7 O -0.58 -22.26 15.39 -3.05 -0.05 -22.31 16 8 C 0.14 4.19 1.84 44.24 0.08 4.28 16 9 H 0.11 3.03 5.43 -2.39 -0.01 3.01 16 10 C -0.17 -4.27 8.53 71.98 0.61 -3.65 16 11 N -0.74 -29.92 5.19 -322.33 -1.67 -31.59 16 12 C 0.19 8.84 6.65 38.25 0.25 9.09 16 13 C -0.10 -4.41 10.06 84.93 0.85 -3.56 16 14 N -0.45 -22.46 10.33 -193.06 -1.99 -24.46 16 15 C -0.07 -3.81 10.97 85.36 0.94 -2.87 16 16 C 0.07 4.03 5.58 -21.21 -0.12 3.91 16 17 C -0.48 -26.34 9.10 23.47 0.21 -26.13 16 18 H 0.09 4.41 7.87 -2.91 -0.02 4.39 16 19 C 0.03 1.63 5.28 85.26 0.45 2.08 16 20 N -0.82 -44.04 10.78 21.82 0.24 -43.80 16 21 Si 0.99 38.76 29.57 68.60 2.03 40.78 16 22 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 25 C -0.23 -12.63 8.65 23.04 0.20 -12.43 16 26 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.11 1.15 8.07 -2.39 -0.02 1.13 16 30 H 0.06 1.37 7.34 -2.39 -0.02 1.35 16 31 H 0.11 0.82 8.12 -2.39 -0.02 0.80 16 32 H 0.09 1.13 5.33 -2.39 -0.01 1.11 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.74 5.95 -2.39 -0.01 0.73 16 35 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.06 1.79 7.84 -2.39 -0.02 1.77 16 37 H 0.11 1.97 3.64 -2.38 -0.01 1.96 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.39 17.21 7.74 -92.71 -0.72 16.50 16 40 H 0.15 5.59 6.20 -2.91 -0.02 5.57 16 41 H 0.13 6.48 8.06 -2.91 -0.02 6.45 16 42 H 0.29 13.96 8.30 -92.70 -0.77 13.19 16 43 H 0.11 6.32 6.19 -2.91 -0.02 6.30 16 Total: -1.00 -69.78 344.88 3.35 -66.43 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: 0.31 Total: 41.71 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 6.52 Total: -12.50 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -5.46 Total: -114.12 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.78 kcal Total: -69.78 3.35 -66.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164624214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.573 kcal (2) G-P(sol) polarization free energy of solvation -69.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds