Wall clock time and date at job start Tue Mar 31 2020 06:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47075 * 2 1 4 4 C 1.46506 * 120.00364 * 274.58939 * 3 2 1 5 5 C 1.53006 * 109.47022 * 274.03874 * 4 3 2 6 6 C 1.34782 * 120.00186 * 94.59079 * 3 2 1 7 7 O 1.21276 * 119.99643 * 354.97793 * 6 3 2 8 8 C 1.50695 * 120.00204 * 174.97406 * 6 3 2 9 9 H 1.09003 * 109.47479 * 313.90081 * 8 6 3 10 10 C 1.52999 * 109.47265 * 73.90181 * 8 6 3 11 11 N 1.46499 * 109.47242 * 193.90293 * 8 6 3 12 12 C 1.32205 * 120.00032 * 126.76100 * 11 8 6 13 13 C 1.46908 * 120.83660 * 5.45754 * 12 11 8 14 14 C 1.34379 * 119.37353 * 179.70374 * 13 12 11 15 15 N 1.36434 * 121.21369 * 0.60301 * 14 13 12 16 16 H 0.97004 * 119.08353 * 179.66830 * 15 14 13 17 17 C 1.37758 * 121.82453 * 359.64941 * 15 14 13 18 18 C 1.40174 * 119.74740 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99977 * 209.58886 * 18 17 15 20 20 C 1.40346 * 120.00012 * 29.58041 * 18 17 15 21 21 N 1.30586 * 120.00113 * 7.84338 * 20 18 17 22 22 Si 1.86806 * 120.00243 * 187.83940 * 20 18 17 23 23 H 1.48506 * 109.46948 * 60.00261 * 22 20 18 24 24 H 1.48494 * 109.47109 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47047 * 300.00158 * 22 20 18 26 26 C 1.39074 * 120.51262 * 0.04519 * 17 15 14 27 27 H 1.09005 * 109.46782 * 59.99956 * 1 2 3 28 28 H 1.09000 * 109.47280 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47242 * 300.00250 * 1 2 3 30 30 H 1.09002 * 109.46864 * 240.00103 * 2 1 3 31 31 H 1.08993 * 109.47110 * 120.00318 * 2 1 3 32 32 H 1.08996 * 109.46664 * 34.03673 * 4 3 2 33 33 H 1.08994 * 109.47180 * 154.04000 * 4 3 2 34 34 H 1.09002 * 109.46900 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47237 * 299.99448 * 5 4 3 36 36 H 1.09004 * 109.46897 * 60.00118 * 5 4 3 37 37 H 1.08997 * 109.47247 * 310.27812 * 10 8 6 38 38 H 1.08998 * 109.46757 * 70.27544 * 10 8 6 39 39 H 1.09001 * 109.47318 * 190.27696 * 10 8 6 40 40 H 1.08001 * 120.31627 * 359.97438 * 13 12 11 41 41 H 1.07993 * 119.39692 * 180.25312 * 14 13 12 42 42 H 0.97003 * 120.00210 * 179.97438 * 21 20 18 43 43 H 1.07995 * 120.62848 * 179.97438 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1668 2.1057 -1.2647 5 6 3.5377 1.7982 -1.8707 6 6 2.3310 1.9854 1.1635 7 8 2.1228 1.4195 2.2157 8 6 2.9395 3.3640 1.1568 9 1 3.7384 3.4051 0.4164 10 6 1.8646 4.3943 0.8049 11 7 3.4868 3.6627 2.4826 12 6 4.7429 4.0559 2.6059 13 6 5.5711 4.3141 1.4203 14 6 6.8426 4.7184 1.5798 15 7 7.3821 4.8818 2.8223 16 1 8.3048 5.1703 2.9016 17 6 6.6525 4.6486 3.9674 18 6 7.2503 4.8307 5.2221 19 1 6.9242 4.2412 6.0663 20 6 8.2726 5.7789 5.3814 21 7 8.5626 6.5966 4.4054 22 14 9.2186 5.8715 6.9895 23 1 9.8917 4.5723 7.2434 24 1 10.2371 6.9486 6.9034 25 1 8.2786 6.1674 8.1004 26 6 5.3275 4.2336 3.8882 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3851 1.7925 -1.9567 33 1 2.0824 3.1769 -1.0818 34 1 3.6480 2.3369 -2.8118 35 1 4.3194 2.1114 -1.1787 36 1 3.6220 0.7269 -2.0536 37 1 1.3323 4.0727 -0.0903 38 1 1.1618 4.4834 1.6332 39 1 2.3339 5.3607 0.6209 40 1 5.1606 4.1844 0.4298 41 1 7.4505 4.9123 0.7085 42 1 9.2690 7.2523 4.5156 43 1 4.7539 4.0499 4.7846 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164642035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:22 Heat of formation + Delta-G solvation = 4.795855 kcal Electronic energy + Delta-G solvation = -23372.113704 eV Core-core repulsion = 20031.458458 eV Total energy + Delta-G solvation = -3340.655246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.62085 -38.53960 -35.78848 -35.08247 -33.73606 -32.24345 -30.96499 -30.48945 -29.18313 -27.65305 -26.00102 -24.21429 -23.57244 -22.11984 -21.54176 -20.23733 -18.50777 -18.00499 -16.67927 -16.61861 -16.15096 -15.34687 -14.99725 -14.65811 -14.36032 -13.99392 -13.81668 -13.45094 -13.39681 -12.98157 -12.74619 -12.72911 -12.55459 -12.36294 -11.99431 -11.80831 -11.76383 -11.53162 -11.47650 -11.18968 -11.04892 -10.95863 -10.88386 -10.76556 -10.52340 -10.20700 -9.74932 -9.55964 -8.89395 -8.38467 -8.20197 -7.50720 -7.22803 -5.98940 -4.79947 2.62618 2.68216 2.90122 2.93635 3.10482 3.30665 3.39225 3.68248 4.26835 4.63114 4.86514 4.99956 5.15873 5.24358 5.33011 5.39440 5.41822 5.46257 5.50667 5.61802 5.65938 5.76770 5.81124 5.85451 6.01743 6.07730 6.16429 6.22792 6.27458 6.33016 6.50661 6.68574 6.72092 6.77831 6.86867 6.89760 7.37665 7.62627 7.75136 7.82240 7.98255 8.20865 8.32768 8.78252 8.85557 8.91791 9.68966 9.78013 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029569 B = 0.003419 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.723254 B = 8188.413313 C = 8585.773626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.627 5.627 4 C 0.096 3.904 5 C -0.172 4.172 6 C 0.520 3.480 7 O -0.517 6.517 8 C 0.071 3.929 9 H 0.055 0.945 10 C -0.140 4.140 11 N -0.639 5.639 12 C 0.285 3.715 13 C -0.307 4.307 14 C 0.130 3.870 15 N -0.597 5.597 16 H 0.415 0.585 17 C 0.334 3.666 18 C -0.470 4.470 19 H 0.102 0.898 20 C 0.077 3.923 21 N -0.825 5.825 22 Si 0.928 3.072 23 H -0.261 1.261 24 H -0.277 1.277 25 H -0.260 1.260 26 C -0.345 4.345 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.131 0.869 42 H 0.292 0.708 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -3.889 -11.830 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.364 5.364 4 C -0.027 4.027 5 C -0.230 4.230 6 C 0.308 3.692 7 O -0.390 6.390 8 C -0.044 4.044 9 H 0.073 0.927 10 C -0.198 4.198 11 N -0.366 5.366 12 C 0.123 3.877 13 C -0.338 4.338 14 C -0.001 4.001 15 N -0.206 5.206 16 H 0.255 0.745 17 C 0.225 3.775 18 C -0.504 4.504 19 H 0.120 0.880 20 C -0.141 4.141 21 N -0.454 5.454 22 Si 0.751 3.249 23 H -0.185 1.185 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.374 4.374 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.133 0.867 41 H 0.149 0.851 42 H 0.103 0.897 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.569 -4.232 -10.864 12.193 hybrid contribution 1.303 0.459 -0.454 1.454 sum -2.267 -3.773 -11.317 12.143 Atomic orbital electron populations 1.22116 0.96468 1.01605 1.02132 1.21273 0.93982 0.83437 1.02445 1.48190 1.67653 1.13841 1.06678 1.21741 0.97109 0.98351 0.85476 1.22226 0.98027 1.01846 1.00950 1.21352 0.76967 0.88399 0.82476 1.90608 1.51640 1.65880 1.30844 1.21194 0.96708 0.90237 0.96260 0.92705 1.21949 0.98858 0.98626 1.00359 1.73584 1.11731 1.35058 1.16246 1.20321 0.88865 0.86964 0.91580 1.22244 0.95662 1.16577 0.99286 1.21259 0.95122 0.95758 0.87944 1.42170 1.15620 1.59746 1.03112 0.74515 1.17661 0.89242 0.85757 0.84880 1.19473 1.16249 1.19244 0.95393 0.88024 1.26137 0.95415 0.92968 0.99535 1.69250 1.27063 1.15337 1.33759 0.86012 0.79058 0.78998 0.80810 1.18506 1.20180 1.18402 1.20310 0.93233 1.28859 0.94959 0.92969 0.92127 0.92190 0.91517 0.90125 0.91142 0.89105 0.91771 0.92063 0.92676 0.93078 0.91930 0.92449 0.86729 0.85135 0.89707 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.11 1.48 6.16 -4.04 -0.02 1.46 16 3 N -0.63 -9.57 2.47 -173.69 -0.43 -10.00 16 4 C 0.10 1.11 5.62 -4.04 -0.02 1.09 16 5 C -0.17 -1.82 10.16 37.16 0.38 -1.44 16 6 C 0.52 10.58 6.98 -10.99 -0.08 10.50 16 7 O -0.52 -12.80 16.05 5.56 0.09 -12.71 16 8 C 0.07 1.45 2.39 -69.09 -0.16 1.29 16 9 H 0.06 1.05 3.88 -51.93 -0.20 0.84 16 10 C -0.14 -2.42 9.06 37.16 0.34 -2.09 16 11 N -0.64 -16.12 9.74 -51.91 -0.51 -16.62 16 12 C 0.28 7.11 6.80 -82.74 -0.56 6.55 16 13 C -0.31 -6.46 9.34 -37.44 -0.35 -6.81 16 14 C 0.13 2.50 11.15 -16.87 -0.19 2.31 16 15 N -0.60 -12.93 4.83 -10.83 -0.05 -12.98 16 16 H 0.41 8.58 6.53 -40.82 -0.27 8.31 16 17 C 0.33 8.20 6.31 -84.16 -0.53 7.67 16 18 C -0.47 -11.27 9.04 -38.06 -0.34 -11.61 16 19 H 0.10 2.38 7.86 -52.49 -0.41 1.97 16 20 C 0.08 1.68 5.29 -17.29 -0.09 1.59 16 21 N -0.83 -18.13 11.07 55.57 0.62 -17.51 16 22 Si 0.93 16.73 29.57 -169.99 -5.03 11.70 16 23 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 24 H -0.28 -4.86 7.11 56.52 0.40 -4.46 16 25 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 26 C -0.34 -9.00 9.83 -37.82 -0.37 -9.37 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 31 H 0.08 1.25 7.36 -51.93 -0.38 0.86 16 32 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.09 1.06 4.17 -51.93 -0.22 0.84 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.77 7.20 -51.93 -0.37 0.40 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.71 5.55 -51.93 -0.29 0.42 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.11 2.12 5.99 -52.49 -0.31 1.81 16 41 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 42 H 0.29 5.83 8.29 -40.82 -0.34 5.49 16 43 H 0.12 3.14 8.06 -52.49 -0.42 2.72 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -30.53 349.59 -7.91 -38.44 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -6.24 Total: 14.81 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.63 Total: -0.40 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.37 Total: -57.11 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.53 -7.91 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164642035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.238 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds