Wall clock time and date at job start Tue Mar 31 2020 06:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47075 * 2 1 4 4 C 1.46506 * 120.00364 * 274.58939 * 3 2 1 5 5 C 1.53006 * 109.47022 * 274.03874 * 4 3 2 6 6 C 1.34782 * 120.00186 * 94.59079 * 3 2 1 7 7 O 1.21276 * 119.99643 * 354.97793 * 6 3 2 8 8 C 1.50695 * 120.00204 * 174.97406 * 6 3 2 9 9 H 1.09003 * 109.47479 * 313.90081 * 8 6 3 10 10 C 1.52999 * 109.47265 * 73.90181 * 8 6 3 11 11 N 1.46499 * 109.47242 * 193.90293 * 8 6 3 12 12 C 1.32205 * 120.00032 * 126.76100 * 11 8 6 13 13 C 1.46908 * 120.83660 * 5.45754 * 12 11 8 14 14 C 1.34379 * 119.37353 * 179.70374 * 13 12 11 15 15 N 1.36434 * 121.21369 * 0.60301 * 14 13 12 16 16 H 0.97004 * 119.08353 * 179.66830 * 15 14 13 17 17 C 1.37758 * 121.82453 * 359.64941 * 15 14 13 18 18 C 1.40174 * 119.74740 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99977 * 209.58886 * 18 17 15 20 20 C 1.40346 * 120.00012 * 29.58041 * 18 17 15 21 21 N 1.30586 * 120.00113 * 7.84338 * 20 18 17 22 22 Si 1.86806 * 120.00243 * 187.83940 * 20 18 17 23 23 H 1.48506 * 109.46948 * 60.00261 * 22 20 18 24 24 H 1.48494 * 109.47109 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47047 * 300.00158 * 22 20 18 26 26 C 1.39074 * 120.51262 * 0.04519 * 17 15 14 27 27 H 1.09005 * 109.46782 * 59.99956 * 1 2 3 28 28 H 1.09000 * 109.47280 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47242 * 300.00250 * 1 2 3 30 30 H 1.09002 * 109.46864 * 240.00103 * 2 1 3 31 31 H 1.08993 * 109.47110 * 120.00318 * 2 1 3 32 32 H 1.08996 * 109.46664 * 34.03673 * 4 3 2 33 33 H 1.08994 * 109.47180 * 154.04000 * 4 3 2 34 34 H 1.09002 * 109.46900 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47237 * 299.99448 * 5 4 3 36 36 H 1.09004 * 109.46897 * 60.00118 * 5 4 3 37 37 H 1.08997 * 109.47247 * 310.27812 * 10 8 6 38 38 H 1.08998 * 109.46757 * 70.27544 * 10 8 6 39 39 H 1.09001 * 109.47318 * 190.27696 * 10 8 6 40 40 H 1.08001 * 120.31627 * 359.97438 * 13 12 11 41 41 H 1.07993 * 119.39692 * 180.25312 * 14 13 12 42 42 H 0.97003 * 120.00210 * 179.97438 * 21 20 18 43 43 H 1.07995 * 120.62848 * 179.97438 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1668 2.1057 -1.2647 5 6 3.5377 1.7982 -1.8707 6 6 2.3310 1.9854 1.1635 7 8 2.1228 1.4195 2.2157 8 6 2.9395 3.3640 1.1568 9 1 3.7384 3.4051 0.4164 10 6 1.8646 4.3943 0.8049 11 7 3.4868 3.6627 2.4826 12 6 4.7429 4.0559 2.6059 13 6 5.5711 4.3141 1.4203 14 6 6.8426 4.7184 1.5798 15 7 7.3821 4.8818 2.8223 16 1 8.3048 5.1703 2.9016 17 6 6.6525 4.6486 3.9674 18 6 7.2503 4.8307 5.2221 19 1 6.9242 4.2412 6.0663 20 6 8.2726 5.7789 5.3814 21 7 8.5626 6.5966 4.4054 22 14 9.2186 5.8715 6.9895 23 1 9.8917 4.5723 7.2434 24 1 10.2371 6.9486 6.9034 25 1 8.2786 6.1674 8.1004 26 6 5.3275 4.2336 3.8882 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3851 1.7925 -1.9567 33 1 2.0824 3.1769 -1.0818 34 1 3.6480 2.3369 -2.8118 35 1 4.3194 2.1114 -1.1787 36 1 3.6220 0.7269 -2.0536 37 1 1.3323 4.0727 -0.0903 38 1 1.1618 4.4834 1.6332 39 1 2.3339 5.3607 0.6209 40 1 5.1606 4.1844 0.4298 41 1 7.4505 4.9123 0.7085 42 1 9.2690 7.2523 4.5156 43 1 4.7539 4.0499 4.7846 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164642035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:21 Heat of formation + Delta-G solvation = -15.473670 kcal Electronic energy + Delta-G solvation = -23372.992656 eV Core-core repulsion = 20031.458458 eV Total energy + Delta-G solvation = -3341.534198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06787 -40.24959 -37.15438 -36.78382 -35.42940 -33.53205 -32.44970 -32.08579 -30.32266 -29.32750 -27.77290 -25.60872 -24.55526 -23.58943 -23.18175 -21.79804 -19.96342 -19.65648 -18.37474 -18.11290 -17.52923 -16.89330 -16.46353 -16.18968 -15.88868 -15.41687 -15.09091 -14.79982 -14.60136 -14.54484 -14.39936 -13.99899 -13.67125 -13.51362 -13.38965 -13.22366 -13.06577 -12.93302 -12.83114 -12.73095 -12.49614 -12.47883 -12.34805 -11.93793 -11.85031 -11.72341 -11.41009 -11.26595 -10.48960 -9.94863 -9.63978 -9.24848 -8.93761 -7.76564 -6.68680 0.94688 1.04657 1.41859 1.52630 1.58522 1.76887 2.11436 2.16738 2.57269 2.93906 3.44698 3.76209 3.92657 4.06913 4.12035 4.19754 4.23951 4.28584 4.43678 4.47002 4.52267 4.61499 4.68847 4.73499 4.80581 4.92389 4.94003 4.96546 4.99132 5.05820 5.06127 5.18115 5.25047 5.29391 5.38809 5.63101 5.72612 5.80316 5.97615 6.08141 6.38649 6.47720 6.53796 6.98318 7.17989 7.37718 7.94608 8.08446 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029569 B = 0.003419 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.723254 B = 8188.413313 C = 8585.773626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.105 3.895 3 N -0.616 5.616 4 C 0.088 3.912 5 C -0.168 4.168 6 C 0.512 3.488 7 O -0.579 6.579 8 C 0.068 3.932 9 H 0.072 0.928 10 C -0.131 4.131 11 N -0.686 5.686 12 C 0.266 3.734 13 C -0.321 4.321 14 C 0.142 3.858 15 N -0.597 5.597 16 H 0.420 0.580 17 C 0.328 3.672 18 C -0.502 4.502 19 H 0.091 0.909 20 C 0.051 3.949 21 N -0.831 5.831 22 Si 0.996 3.004 23 H -0.257 1.257 24 H -0.259 1.259 25 H -0.268 1.268 26 C -0.396 4.396 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.026 0.974 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.062 0.938 40 H 0.142 0.858 41 H 0.190 0.810 42 H 0.305 0.695 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 -3.312 -15.104 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.017 4.017 3 N -0.350 5.350 4 C -0.034 4.034 5 C -0.226 4.226 6 C 0.301 3.699 7 O -0.458 6.458 8 C -0.047 4.047 9 H 0.089 0.911 10 C -0.189 4.189 11 N -0.414 5.414 12 C 0.104 3.896 13 C -0.350 4.350 14 C 0.013 3.987 15 N -0.207 5.207 16 H 0.261 0.739 17 C 0.218 3.782 18 C -0.534 4.534 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.458 5.458 22 Si 0.816 3.184 23 H -0.181 1.181 24 H -0.183 1.183 25 H -0.192 1.192 26 C -0.425 4.425 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.045 0.955 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.159 0.841 41 H 0.207 0.793 42 H 0.117 0.883 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.175 -3.652 -14.237 14.858 hybrid contribution 0.866 0.289 0.495 1.039 sum -1.309 -3.363 -13.742 14.208 Atomic orbital electron populations 1.22047 0.94905 1.02971 1.01554 1.21489 0.95264 0.82216 1.02709 1.48229 1.65694 1.14558 1.06550 1.22090 0.99182 0.98018 0.84070 1.22190 0.96203 1.02682 1.01511 1.21452 0.76830 0.88457 0.83165 1.90574 1.54582 1.67210 1.33393 1.21303 0.97703 0.91177 0.94505 0.91077 1.21893 0.97743 0.98214 1.01023 1.73425 1.12584 1.35188 1.20165 1.20479 0.89512 0.87137 0.92503 1.22344 0.96151 1.17701 0.98842 1.22015 0.95105 0.93146 0.88474 1.42163 1.15560 1.59797 1.03222 0.73903 1.17691 0.88840 0.85244 0.86375 1.19668 1.17872 1.20610 0.95272 0.89095 1.26838 0.95152 0.91764 1.02892 1.69233 1.26830 1.14804 1.34969 0.85002 0.77647 0.79524 0.76200 1.18055 1.18264 1.19236 1.20224 0.94489 1.32989 0.94790 0.90645 0.89897 0.95489 0.87686 0.93335 0.87447 0.89196 0.88793 0.94584 0.92053 0.89120 0.94512 0.91855 0.84102 0.79335 0.88286 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 10.24 71.98 0.74 -2.63 16 2 C 0.11 2.67 6.16 86.38 0.53 3.20 16 3 N -0.62 -18.12 2.47 -821.83 -2.03 -20.15 16 4 C 0.09 1.72 5.62 86.38 0.49 2.20 16 5 C -0.17 -2.94 10.16 71.98 0.73 -2.21 16 6 C 0.51 21.48 6.98 87.65 0.61 22.09 16 7 O -0.58 -30.66 16.05 -3.02 -0.05 -30.70 16 8 C 0.07 2.82 2.39 44.24 0.11 2.93 16 9 H 0.07 2.67 3.88 -2.39 -0.01 2.66 16 10 C -0.13 -4.51 9.06 71.98 0.65 -3.86 16 11 N -0.69 -36.70 9.74 -318.15 -3.10 -39.80 16 12 C 0.27 13.98 6.80 42.30 0.29 14.27 16 13 C -0.32 -13.33 9.34 23.66 0.22 -13.11 16 14 C 0.14 5.21 11.15 83.09 0.93 6.14 16 15 N -0.60 -25.67 4.83 -188.19 -0.91 -26.58 16 16 H 0.42 16.85 6.53 -92.71 -0.61 16.24 16 17 C 0.33 16.85 6.31 38.88 0.25 17.09 16 18 C -0.50 -24.98 9.04 23.25 0.21 -24.77 16 19 H 0.09 4.56 7.86 -2.91 -0.02 4.54 16 20 C 0.05 2.19 5.29 85.39 0.45 2.64 16 21 N -0.83 -35.34 11.07 21.89 0.24 -35.10 16 22 Si 1.00 33.48 29.57 68.60 2.03 35.51 16 23 H -0.26 -8.44 7.11 99.48 0.71 -7.74 16 24 H -0.26 -7.94 7.11 99.48 0.71 -7.23 16 25 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 26 C -0.40 -22.33 9.83 23.41 0.23 -22.10 16 27 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 1.87 8.11 -2.39 -0.02 1.85 16 31 H 0.05 1.55 7.36 -2.39 -0.02 1.53 16 32 H 0.11 1.40 8.10 -2.39 -0.02 1.38 16 33 H 0.09 1.79 4.17 -2.39 -0.01 1.78 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.03 0.82 7.20 -2.39 -0.02 0.80 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 2.33 5.55 -2.39 -0.01 2.32 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.14 4.96 5.99 -2.91 -0.02 4.94 16 41 H 0.19 4.66 8.06 -2.91 -0.02 4.63 16 42 H 0.31 11.48 8.29 -92.71 -0.77 10.71 16 43 H 0.08 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -74.42 349.59 3.03 -71.40 By element: Atomic # 1 Polarization: 43.14 SS G_CDS: 0.42 Total: 43.56 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 6.43 Total: 1.87 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -5.80 Total: -121.63 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.05 Total: -30.70 kcal Atomic # 14 Polarization: 33.48 SS G_CDS: 2.03 Total: 35.51 kcal Total: -74.42 3.03 -71.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164642035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.922 kcal (2) G-P(sol) polarization free energy of solvation -74.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds