Wall clock time and date at job start Tue Mar 31 2020 06:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.47090 * 2 1 4 4 C 1.36014 * 116.99814 * 179.97438 * 3 2 1 5 5 C 1.39261 * 120.38951 * 179.97438 * 4 3 2 6 6 C 1.38297 * 118.46310 * 179.97438 * 5 4 3 7 7 C 1.39095 * 119.15176 * 0.02562 * 6 5 4 8 8 N 1.39250 * 119.64462 * 180.02562 * 7 6 5 9 9 C 1.46956 * 110.99968 * 303.79206 * 8 7 6 10 10 C 1.53059 * 109.36669 * 176.81499 * 9 8 7 11 11 N 1.46951 * 109.36359 * 58.40130 * 10 9 8 12 12 C 1.46893 * 111.00222 * 176.81115 * 11 10 9 13 13 C 1.50702 * 109.46799 * 58.97967 * 12 11 10 14 14 H 1.07997 * 120.00351 * 5.00719 * 13 12 11 15 15 C 1.37884 * 120.00097 * 185.01158 * 13 12 11 16 16 N 1.31517 * 119.99731 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00118 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47046 * 90.00057 * 17 15 13 19 19 H 1.48500 * 109.47000 * 210.00098 * 17 15 13 20 20 H 1.48497 * 109.46952 * 329.99791 * 17 15 13 21 21 C 1.46960 * 110.88305 * 300.68261 * 11 10 9 22 22 C 1.46962 * 111.00066 * 180.02562 * 8 7 6 23 23 N 1.32320 * 120.70763 * 359.97381 * 7 6 5 24 24 C 1.32002 * 121.67633 * 359.77208 * 23 7 6 25 25 H 1.08999 * 109.46696 * 60.00467 * 1 2 3 26 26 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47333 * 300.00366 * 1 2 3 28 28 H 1.09003 * 109.47291 * 239.99217 * 2 1 3 29 29 H 1.09003 * 109.46710 * 120.00054 * 2 1 3 30 30 H 1.08003 * 120.76875 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.42873 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.49257 * 296.78496 * 9 8 7 33 33 H 1.09005 * 109.48649 * 56.84900 * 9 8 7 34 34 H 1.08996 * 109.48346 * 298.43673 * 10 9 8 35 35 H 1.08996 * 109.48714 * 178.37386 * 10 9 8 36 36 H 1.09000 * 109.47507 * 178.97742 * 12 11 10 37 37 H 1.09002 * 109.47395 * 298.98293 * 12 11 10 38 38 H 0.97001 * 119.99494 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.48335 * 299.35496 * 21 11 10 40 40 H 1.08996 * 109.48972 * 179.28854 * 21 11 10 41 41 H 1.09005 * 109.48166 * 303.15014 * 22 8 7 42 42 H 1.09002 * 109.49022 * 63.19006 * 22 8 7 43 43 H 1.08004 * 119.61399 * 180.24275 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3548 1.5254 0.0005 5 6 3.8958 2.8086 0.0000 6 6 5.2722 2.9436 0.0012 7 6 6.0651 1.8008 0.0022 8 7 7.4520 1.9247 0.0039 9 6 7.9100 2.7316 -1.1358 10 6 9.4279 2.9103 -1.0538 11 7 10.0746 1.5907 -1.0528 12 6 11.5377 1.7214 -1.0511 13 6 11.9714 2.4956 0.1669 14 1 11.2435 2.7847 0.9105 15 6 13.2976 2.8350 0.3319 16 7 14.1839 2.4835 -0.5739 17 14 13.8353 3.7941 1.8420 18 1 14.2002 2.8469 2.9259 19 1 15.0117 4.6342 1.5019 20 1 12.7215 4.6637 2.2986 21 6 9.6166 0.7838 0.0869 22 6 8.0988 0.6051 0.0041 23 7 5.5155 0.5971 0.0026 24 6 4.2057 0.4331 0.0066 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.2554 3.6783 -0.0012 31 1 5.7257 3.9238 0.0004 32 1 7.6533 2.2254 -2.0664 33 1 7.4268 3.7082 -1.1074 34 1 9.6825 3.4407 -0.1362 35 1 9.7735 3.4841 -1.9136 36 1 11.9910 0.7303 -1.0321 37 1 11.8564 2.2495 -1.9498 38 1 15.1169 2.7220 -0.4576 39 1 9.8734 1.2901 1.0174 40 1 10.0998 -0.1928 0.0585 41 1 7.7531 0.0310 0.8639 42 1 7.8437 0.0749 -0.9135 43 1 3.7928 -0.5649 0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056426.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:41 Heat of formation + Delta-G solvation = 18.444340 kcal Electronic energy + Delta-G solvation = -23031.634835 eV Core-core repulsion = 19691.571432 eV Total energy + Delta-G solvation = -3340.063403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91379 -39.24958 -37.73470 -34.98192 -32.86843 -32.41633 -31.70645 -30.34852 -29.51512 -27.20166 -25.01659 -24.89661 -23.27582 -22.60101 -21.82920 -21.41106 -19.20830 -18.49608 -17.22894 -16.84194 -16.43897 -16.26782 -15.18639 -14.74903 -14.67371 -14.29729 -14.22220 -13.90759 -13.74255 -13.70125 -13.28267 -13.07037 -13.04529 -12.59416 -12.46352 -12.01615 -11.83140 -11.80426 -11.25444 -11.09175 -10.88980 -10.75181 -10.58577 -10.45047 -10.15501 -9.86189 -9.83476 -9.55529 -9.49223 -9.26657 -8.42810 -7.68042 -7.19427 -6.02355 -4.11287 1.07101 1.24188 2.90431 3.28453 3.35302 3.38766 3.56495 3.90320 4.39695 4.41551 4.52821 4.55181 4.67184 4.86909 4.92630 5.02186 5.07590 5.19675 5.28014 5.40231 5.40256 5.49285 5.55994 5.61798 5.69634 5.78119 5.83847 5.91170 6.03349 6.11522 6.24014 6.32222 6.59977 6.73511 6.83583 6.96109 7.04909 7.27663 7.38660 7.52679 7.90205 8.00596 8.03359 8.25787 8.29376 8.99099 9.55621 11.02742 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.039700 B = 0.002869 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.120798 B = 9755.859105 C = 9930.206825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.315 6.315 4 C 0.039 3.961 5 C -0.084 4.084 6 C -0.149 4.149 7 C 0.290 3.710 8 N -0.473 5.473 9 C 0.063 3.937 10 C 0.064 3.936 11 N -0.544 5.544 12 C 0.187 3.813 13 C -0.549 4.549 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.059 3.941 22 C 0.073 3.927 23 N -0.487 5.487 24 C 0.046 3.954 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.028 0.972 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.388 -2.728 0.037 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.228 6.228 4 C -0.009 4.009 5 C -0.110 4.110 6 C -0.172 4.172 7 C 0.057 3.943 8 N -0.191 5.191 9 C -0.063 4.063 10 C -0.065 4.065 11 N -0.268 5.268 12 C 0.061 3.939 13 C -0.588 4.588 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.070 4.070 22 C -0.054 4.054 23 N -0.202 5.202 24 C -0.113 4.113 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.734 -3.304 -0.040 23.963 hybrid contribution 0.043 1.065 1.095 1.528 sum -23.691 -2.239 1.055 23.820 Atomic orbital electron populations 1.21764 0.92691 1.02874 1.03487 1.22781 0.95956 0.82085 1.01491 1.86060 1.18330 1.29084 1.89353 1.19802 0.83415 0.95137 1.02516 1.20743 0.94522 0.95345 1.00421 1.21479 0.92436 0.99578 1.03664 1.19979 0.90582 0.88482 0.95232 1.59426 1.00529 1.18066 1.41038 1.22456 0.97681 0.96471 0.89677 1.21953 0.89816 0.92729 1.02033 1.62714 1.10316 1.13376 1.40445 1.19741 0.80438 0.97005 0.96668 1.21761 0.93534 1.36124 1.07353 0.92314 1.24969 0.96764 0.95810 0.96284 1.69948 1.02338 1.46417 1.34285 0.86637 0.78241 0.80081 0.83328 1.20658 1.21192 1.19916 1.22045 0.91861 0.98622 0.94482 1.22125 0.94210 0.87322 1.01754 1.67535 1.12493 1.25428 1.14701 1.22620 0.88741 0.98079 1.01828 0.91533 0.90339 0.91540 0.91983 0.91981 0.84108 0.83837 0.93498 0.90457 0.92879 0.90645 0.95369 0.94666 0.92832 0.93432 0.90880 0.90347 0.93101 0.82902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.05 0.38 5.47 37.16 0.20 0.58 16 3 O -0.31 -3.29 10.15 -19.79 -0.20 -3.49 16 4 C 0.04 0.46 6.71 -39.12 -0.26 0.20 16 5 C -0.08 -0.95 10.12 -39.18 -0.40 -1.35 16 6 C -0.15 -1.88 9.21 -39.24 -0.36 -2.24 16 7 C 0.29 4.40 6.41 -154.86 -0.99 3.41 16 8 N -0.47 -7.87 4.74 -172.98 -0.82 -8.69 16 9 C 0.06 1.01 5.37 -3.76 -0.02 0.99 16 10 C 0.06 1.23 5.24 -3.77 -0.02 1.21 16 11 N -0.54 -11.72 4.92 -235.91 -1.16 -12.88 16 12 C 0.19 4.79 5.14 -4.98 -0.03 4.77 16 13 C -0.55 -14.98 7.66 -34.44 -0.26 -15.25 16 14 H 0.06 1.61 5.82 -52.49 -0.31 1.30 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.06 1.17 5.32 -3.76 -0.02 1.15 16 22 C 0.07 1.26 4.79 -3.76 -0.02 1.25 16 23 N -0.49 -7.31 8.70 -12.28 -0.11 -7.42 16 24 C 0.05 0.56 10.21 -17.39 -0.18 0.38 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.14 1.58 7.17 -52.49 -0.38 1.20 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.04 6.79 -51.93 -0.35 0.68 16 34 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.03 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.05 1.04 6.78 -51.93 -0.35 0.69 16 40 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 41 H 0.08 1.32 7.82 -51.93 -0.41 0.91 16 42 H 0.05 0.90 8.05 -51.93 -0.42 0.49 16 43 H 0.15 1.48 6.30 -52.48 -0.33 1.15 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -30.73 342.18 -10.10 -40.84 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.62 Total: -0.95 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.07 Total: -3.62 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -1.35 Total: -54.39 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.20 Total: -3.49 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.73 -10.10 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056426.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.281 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds