Wall clock time and date at job start Tue Mar 31 2020 06:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.47090 * 2 1 4 4 C 1.36014 * 116.99814 * 179.97438 * 3 2 1 5 5 C 1.39261 * 120.38951 * 179.97438 * 4 3 2 6 6 C 1.38297 * 118.46310 * 179.97438 * 5 4 3 7 7 C 1.39095 * 119.15176 * 0.02562 * 6 5 4 8 8 N 1.39250 * 119.64462 * 180.02562 * 7 6 5 9 9 C 1.46956 * 110.99968 * 303.79206 * 8 7 6 10 10 C 1.53059 * 109.36669 * 176.81499 * 9 8 7 11 11 N 1.46951 * 109.36359 * 58.40130 * 10 9 8 12 12 C 1.46893 * 111.00222 * 176.81115 * 11 10 9 13 13 C 1.50702 * 109.46799 * 58.97967 * 12 11 10 14 14 H 1.07997 * 120.00351 * 5.00719 * 13 12 11 15 15 C 1.37884 * 120.00097 * 185.01158 * 13 12 11 16 16 N 1.31517 * 119.99731 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00118 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47046 * 90.00057 * 17 15 13 19 19 H 1.48500 * 109.47000 * 210.00098 * 17 15 13 20 20 H 1.48497 * 109.46952 * 329.99791 * 17 15 13 21 21 C 1.46960 * 110.88305 * 300.68261 * 11 10 9 22 22 C 1.46962 * 111.00066 * 180.02562 * 8 7 6 23 23 N 1.32320 * 120.70763 * 359.97381 * 7 6 5 24 24 C 1.32002 * 121.67633 * 359.77208 * 23 7 6 25 25 H 1.08999 * 109.46696 * 60.00467 * 1 2 3 26 26 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47333 * 300.00366 * 1 2 3 28 28 H 1.09003 * 109.47291 * 239.99217 * 2 1 3 29 29 H 1.09003 * 109.46710 * 120.00054 * 2 1 3 30 30 H 1.08003 * 120.76875 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.42873 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.49257 * 296.78496 * 9 8 7 33 33 H 1.09005 * 109.48649 * 56.84900 * 9 8 7 34 34 H 1.08996 * 109.48346 * 298.43673 * 10 9 8 35 35 H 1.08996 * 109.48714 * 178.37386 * 10 9 8 36 36 H 1.09000 * 109.47507 * 178.97742 * 12 11 10 37 37 H 1.09002 * 109.47395 * 298.98293 * 12 11 10 38 38 H 0.97001 * 119.99494 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.48335 * 299.35496 * 21 11 10 40 40 H 1.08996 * 109.48972 * 179.28854 * 21 11 10 41 41 H 1.09005 * 109.48166 * 303.15014 * 22 8 7 42 42 H 1.09002 * 109.49022 * 63.19006 * 22 8 7 43 43 H 1.08004 * 119.61399 * 180.24275 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3548 1.5254 0.0005 5 6 3.8958 2.8086 0.0000 6 6 5.2722 2.9436 0.0012 7 6 6.0651 1.8008 0.0022 8 7 7.4520 1.9247 0.0039 9 6 7.9100 2.7316 -1.1358 10 6 9.4279 2.9103 -1.0538 11 7 10.0746 1.5907 -1.0528 12 6 11.5377 1.7214 -1.0511 13 6 11.9714 2.4956 0.1669 14 1 11.2435 2.7847 0.9105 15 6 13.2976 2.8350 0.3319 16 7 14.1839 2.4835 -0.5739 17 14 13.8353 3.7941 1.8420 18 1 14.2002 2.8469 2.9259 19 1 15.0117 4.6342 1.5019 20 1 12.7215 4.6637 2.2986 21 6 9.6166 0.7838 0.0869 22 6 8.0988 0.6051 0.0041 23 7 5.5155 0.5971 0.0026 24 6 4.2057 0.4331 0.0066 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.2554 3.6783 -0.0012 31 1 5.7257 3.9238 0.0004 32 1 7.6533 2.2254 -2.0664 33 1 7.4268 3.7082 -1.1074 34 1 9.6825 3.4407 -0.1362 35 1 9.7735 3.4841 -1.9136 36 1 11.9910 0.7303 -1.0321 37 1 11.8564 2.2495 -1.9498 38 1 15.1169 2.7220 -0.4576 39 1 9.8734 1.2901 1.0174 40 1 10.0998 -0.1928 0.0585 41 1 7.7531 0.0310 0.8639 42 1 7.8437 0.0749 -0.9135 43 1 3.7928 -0.5649 0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056426.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:40 Heat of formation + Delta-G solvation = -2.101022 kcal Electronic energy + Delta-G solvation = -23032.525749 eV Core-core repulsion = 19691.571432 eV Total energy + Delta-G solvation = -3340.954317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91500 -40.36920 -38.93513 -36.49595 -34.44701 -33.73209 -32.45569 -31.75635 -30.78532 -28.81054 -26.73765 -25.81287 -24.37308 -24.08280 -23.00378 -22.66320 -20.80225 -19.31789 -18.62329 -18.17076 -17.76708 -17.10887 -16.83214 -16.10713 -15.89526 -15.86195 -15.41616 -15.35967 -15.04622 -14.64546 -14.52705 -14.23677 -13.95653 -13.70216 -13.53735 -13.43285 -13.16204 -12.92363 -12.80691 -12.46108 -12.43626 -12.28028 -12.16941 -11.85972 -11.80836 -11.78669 -11.46923 -10.82433 -10.60454 -10.50797 -10.33035 -9.06586 -8.73847 -8.15344 -6.34307 0.13003 0.28298 1.37567 1.38082 1.48901 2.17482 2.37953 2.49361 2.84179 3.09698 3.33764 3.44437 3.69009 3.92528 3.94935 4.07507 4.13605 4.16361 4.28900 4.34118 4.39895 4.42484 4.47706 4.54787 4.67855 4.74440 4.83968 4.92339 4.95548 4.96821 5.03676 5.08857 5.18805 5.23622 5.26475 5.33316 5.37804 5.70704 5.74284 6.01705 6.11582 6.24825 6.35332 6.47259 6.85596 6.99065 7.36897 8.87386 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.039700 B = 0.002869 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.120798 B = 9755.859105 C = 9930.206825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 O -0.322 6.322 4 C 0.047 3.953 5 C -0.084 4.084 6 C -0.145 4.145 7 C 0.262 3.738 8 N -0.483 5.483 9 C 0.075 3.925 10 C 0.065 3.935 11 N -0.545 5.545 12 C 0.200 3.800 13 C -0.554 4.554 14 H 0.056 0.944 15 C 0.012 3.988 16 N -0.926 5.926 17 Si 0.957 3.043 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.064 3.936 22 C 0.091 3.909 23 N -0.510 5.510 24 C 0.036 3.964 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.003 0.997 37 H 0.011 0.989 38 H 0.265 0.735 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.929 -2.071 0.814 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.235 6.235 4 C -0.001 4.001 5 C -0.110 4.110 6 C -0.167 4.167 7 C 0.031 3.969 8 N -0.202 5.202 9 C -0.051 4.051 10 C -0.063 4.063 11 N -0.269 5.269 12 C 0.074 3.926 13 C -0.593 4.593 14 H 0.074 0.926 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.783 3.217 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.193 1.193 21 C -0.065 4.065 22 C -0.037 4.037 23 N -0.225 5.225 24 C -0.122 4.122 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.184 0.816 31 H 0.178 0.822 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.022 0.978 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -26.320 -2.653 0.739 26.464 hybrid contribution 0.657 0.791 0.820 1.315 sum -25.664 -1.862 1.559 25.779 Atomic orbital electron populations 1.21792 0.91253 1.04179 1.03276 1.23097 0.97130 0.80760 1.02336 1.86076 1.17393 1.31162 1.88905 1.19934 0.84051 0.95192 1.00970 1.21058 0.94330 0.96237 0.99411 1.21636 0.92814 0.99438 1.02839 1.20015 0.89786 0.89562 0.97572 1.59451 1.01926 1.17314 1.41512 1.22348 0.94919 0.98146 0.89713 1.21967 0.92313 0.91139 1.00917 1.62639 1.07970 1.14994 1.41270 1.19402 0.83063 0.94946 0.95199 1.21947 0.93708 1.36014 1.07616 0.92591 1.25809 0.96865 0.96830 0.99274 1.70065 1.02730 1.47584 1.36159 0.85564 0.77922 0.78712 0.79547 1.20112 1.20548 1.19259 1.22011 0.94037 0.97761 0.92696 1.21836 0.91912 0.88275 1.01655 1.67450 1.13905 1.25798 1.15307 1.22955 0.87997 0.99477 1.01750 0.91729 0.88299 0.91754 0.91123 0.91132 0.81560 0.82240 0.93603 0.87339 0.94965 0.90658 0.97836 0.97055 0.92600 0.95580 0.91237 0.89869 0.93583 0.80809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 71.98 0.74 -0.46 16 2 C 0.04 0.49 5.47 71.98 0.39 0.88 16 3 O -0.32 -5.88 10.15 -93.72 -0.95 -6.83 16 4 C 0.05 0.98 6.71 22.57 0.15 1.13 16 5 C -0.08 -1.66 10.12 22.53 0.23 -1.44 16 6 C -0.14 -3.31 9.21 22.49 0.21 -3.10 16 7 C 0.26 7.57 6.41 132.99 0.85 8.42 16 8 N -0.48 -15.69 4.74 -701.18 -3.32 -19.01 16 9 C 0.07 2.30 5.37 86.31 0.46 2.77 16 10 C 0.07 2.55 5.24 86.31 0.45 3.00 16 11 N -0.54 -24.12 4.92 -900.30 -4.43 -28.55 16 12 C 0.20 10.70 5.14 85.56 0.44 11.14 16 13 C -0.55 -30.96 7.66 25.60 0.20 -30.77 16 14 H 0.06 3.12 5.82 -2.91 -0.02 3.10 16 15 C 0.01 0.66 5.46 84.66 0.46 1.12 16 16 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 17 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.06 2.61 5.32 86.31 0.46 3.07 16 22 C 0.09 3.14 4.79 86.31 0.41 3.56 16 23 N -0.51 -14.63 8.70 -192.78 -1.68 -16.31 16 24 C 0.04 0.82 10.21 84.72 0.87 1.69 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.73 7.69 -2.39 -0.02 0.71 16 29 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 30 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 31 H 0.16 3.02 7.17 -2.91 -0.02 3.00 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 2.66 6.79 -2.38 -0.02 2.65 16 34 H 0.03 1.39 6.62 -2.39 -0.02 1.37 16 35 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.00 0.20 8.12 -2.39 -0.02 0.18 16 37 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.03 1.17 6.78 -2.39 -0.02 1.16 16 40 H 0.07 2.82 8.12 -2.39 -0.02 2.80 16 41 H 0.08 2.79 7.82 -2.38 -0.02 2.77 16 42 H 0.05 1.63 8.05 -2.39 -0.02 1.61 16 43 H 0.18 2.98 6.30 -2.91 -0.02 2.96 16 Total: -1.00 -66.75 342.18 -0.75 -67.50 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.99 Total: 10.86 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 6.32 Total: 1.01 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -9.14 Total: -118.91 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.95 Total: -6.83 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -66.75 -0.75 -67.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056426.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.395 kcal (2) G-P(sol) polarization free energy of solvation -66.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds