Wall clock time and date at job start Tue Mar 31 2020 07:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00099 * 2 1 4 4 C 1.50702 * 109.47295 * 179.97438 * 3 2 1 5 5 C 1.38883 * 120.33837 * 270.02377 * 4 3 2 6 6 C 1.38300 * 118.50416 * 179.70476 * 5 4 3 7 7 C 1.39139 * 119.09723 * 0.55855 * 6 5 4 8 8 N 1.39000 * 119.70713 * 179.71028 * 7 6 5 9 9 C 1.46963 * 110.99679 * 303.52431 * 8 7 6 10 10 C 1.53054 * 109.36445 * 176.81259 * 9 8 7 11 11 N 1.46959 * 109.36329 * 58.40062 * 10 9 8 12 12 C 1.46900 * 110.99598 * 176.81416 * 11 10 9 13 13 C 1.50695 * 109.47391 * 58.97957 * 12 11 10 14 14 H 1.08005 * 120.00280 * 5.00587 * 13 12 11 15 15 C 1.37877 * 120.00219 * 185.01223 * 13 12 11 16 16 N 1.31516 * 120.00039 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00243 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47356 * 59.99496 * 17 15 13 19 19 H 1.48505 * 109.47093 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47238 * 299.99282 * 17 15 13 21 21 C 1.46961 * 110.87773 * 300.67898 * 11 10 9 22 22 C 1.46948 * 111.00220 * 179.72842 * 8 7 6 23 23 N 1.32396 * 120.58664 * 359.42685 * 7 6 5 24 24 C 1.31971 * 121.62402 * 0.28328 * 23 7 6 25 25 H 1.08999 * 109.47287 * 300.00154 * 1 2 3 26 26 H 1.09004 * 109.46961 * 59.99897 * 1 2 3 27 27 H 1.09002 * 109.47163 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47284 * 60.00305 * 3 2 1 29 29 H 1.08996 * 109.47678 * 299.99870 * 3 2 1 30 30 H 1.07993 * 120.74660 * 0.02562 * 5 4 3 31 31 H 1.07997 * 120.44915 * 180.28264 * 6 5 4 32 32 H 1.08999 * 109.48842 * 296.77859 * 9 8 7 33 33 H 1.09002 * 109.49184 * 56.84382 * 9 8 7 34 34 H 1.09003 * 109.48771 * 298.43563 * 10 9 8 35 35 H 1.09000 * 109.48663 * 178.36913 * 10 9 8 36 36 H 1.08997 * 109.46575 * 178.97715 * 12 11 10 37 37 H 1.08993 * 109.47293 * 298.97485 * 12 11 10 38 38 H 0.96991 * 120.00544 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.49056 * 299.35437 * 21 11 10 40 40 H 1.09001 * 109.48284 * 179.29061 * 21 11 10 41 41 H 1.09009 * 109.48724 * 303.15016 * 22 8 7 42 42 H 1.08997 * 109.49270 * 63.19581 * 22 8 7 43 43 H 1.07996 * 119.57192 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2113 1.1308 1.1996 6 6 5.5888 1.0154 1.1559 7 6 6.2252 0.9712 -0.0806 8 7 7.6096 0.8615 -0.1393 9 6 8.2563 1.9537 0.6014 10 6 9.7734 1.7530 0.5798 11 7 10.2403 1.7165 -0.8132 12 6 11.7034 1.6005 -0.8751 13 6 12.1383 0.3445 -0.1651 14 1 11.3987 -0.3440 0.2164 15 6 13.4805 0.0741 -0.0022 16 7 14.3812 0.9122 -0.4670 17 14 14.0196 -1.4825 0.8785 18 1 13.5005 -2.6681 0.1506 19 1 15.5030 -1.5386 0.9211 20 1 13.4840 -1.4784 2.2635 21 6 9.5936 0.6242 -1.5538 22 6 8.0765 0.8250 -1.5321 23 7 5.5234 1.0270 -1.2019 24 6 4.2079 1.1313 -1.1904 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.6903 1.1714 2.1447 31 1 6.1630 0.9649 2.0692 32 1 8.0088 2.9067 0.1337 33 1 7.9039 1.9522 1.6329 34 1 10.0229 0.8129 1.0717 35 1 10.2568 2.5775 1.1039 36 1 12.0206 1.5573 -1.9170 37 1 12.1572 2.4662 -0.3927 38 1 15.3254 0.7219 -0.3528 39 1 9.8410 -0.3287 -1.0860 40 1 9.9460 0.6258 -2.5852 41 1 7.5931 0.0004 -2.0562 42 1 7.8267 1.7649 -2.0242 43 1 3.6684 1.1746 -2.1250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:57 Heat of formation + Delta-G solvation = 13.582149 kcal Electronic energy + Delta-G solvation = -22942.230059 eV Core-core repulsion = 19601.955816 eV Total energy + Delta-G solvation = -3340.274243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71088 -38.68394 -37.79451 -35.27200 -32.86083 -32.42845 -31.21650 -30.36107 -28.26423 -26.96636 -25.58619 -24.62534 -24.05576 -22.45884 -21.99535 -21.24080 -19.22316 -17.50157 -16.86094 -16.71731 -16.36262 -16.11016 -15.58472 -15.11936 -14.69618 -14.44966 -14.25872 -14.08991 -13.90936 -13.60743 -13.15950 -13.05549 -12.84623 -12.67526 -12.04581 -11.96632 -11.81032 -11.57445 -11.10050 -10.93452 -10.76002 -10.60963 -10.47439 -10.17115 -10.06334 -9.95668 -9.84404 -9.69560 -9.54705 -9.37710 -8.42865 -7.94428 -7.20976 -6.02627 -4.11698 1.02413 1.27012 3.29833 3.34546 3.37629 3.38410 3.67022 4.01741 4.41329 4.45360 4.63122 4.68056 4.86301 4.95098 4.98460 4.99744 5.07388 5.16384 5.27334 5.31071 5.31709 5.43556 5.53429 5.62683 5.77215 5.80498 5.93570 6.01652 6.05106 6.17666 6.28660 6.42783 6.60168 6.71886 6.79402 6.83140 6.94072 7.26535 7.34102 7.51812 7.89599 8.01781 8.04102 8.24318 8.28631 8.98324 9.55219 11.02520 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035642 B = 0.002865 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.405912 B = 9770.512327 C = 9986.952474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.115 3.885 4 C -0.189 4.189 5 C -0.033 4.033 6 C -0.193 4.193 7 C 0.331 3.669 8 N -0.475 5.475 9 C 0.065 3.935 10 C 0.063 3.937 11 N -0.544 5.544 12 C 0.187 3.813 13 C -0.550 4.550 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.891 5.891 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.058 3.942 22 C 0.072 3.928 23 N -0.522 5.522 24 C 0.150 3.850 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.029 0.971 37 H 0.035 0.965 38 H 0.263 0.737 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.965 2.419 2.249 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.038 3.962 4 C -0.193 4.193 5 C -0.059 4.059 6 C -0.216 4.216 7 C 0.098 3.902 8 N -0.192 5.192 9 C -0.061 4.061 10 C -0.066 4.066 11 N -0.268 5.268 12 C 0.062 3.938 13 C -0.589 4.589 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.071 4.071 22 C -0.054 4.054 23 N -0.236 5.236 24 C -0.008 4.008 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.073 2.271 1.429 24.222 hybrid contribution -0.183 -0.917 1.377 1.664 sum -24.256 1.354 2.805 24.455 Atomic orbital electron populations 1.22752 0.81083 1.02848 0.99938 1.88004 1.19498 1.27699 1.95377 1.21134 0.89349 0.84901 1.00805 1.20325 0.95064 1.09256 0.94653 1.21266 0.93453 0.93294 0.97859 1.21571 0.94847 1.07018 0.98142 1.20109 0.90528 0.90405 0.89112 1.59218 1.00639 1.42508 1.16825 1.22453 0.96058 0.90319 0.97263 1.21962 0.90542 1.01979 0.92095 1.62727 1.10142 1.42925 1.11035 1.19736 0.80415 0.96346 0.97309 1.21718 0.92022 1.07402 1.37754 0.92386 1.24961 0.96765 0.96590 0.95457 1.69930 1.01105 1.36159 1.45786 0.86695 0.77422 0.83848 0.80291 1.20252 1.21243 1.20256 1.22053 0.90917 0.94866 0.99225 1.22150 0.95771 1.01920 0.85608 1.67738 1.08457 1.17115 1.30294 1.22392 0.89129 0.92082 0.97208 0.94090 0.94011 0.89595 0.92549 0.92359 0.84951 0.84455 0.93334 0.90370 0.92868 0.90568 0.95337 0.94662 0.92755 0.93424 0.90784 0.90197 0.92899 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.88 10.69 -35.23 -0.38 -4.25 16 3 C 0.11 0.97 6.08 36.01 0.22 1.19 16 4 C -0.19 -2.07 5.53 -104.46 -0.58 -2.65 16 5 C -0.03 -0.36 9.85 -39.32 -0.39 -0.74 16 6 C -0.19 -2.46 9.22 -39.22 -0.36 -2.82 16 7 C 0.33 5.05 6.40 -155.02 -0.99 4.06 16 8 N -0.48 -7.95 4.73 -173.04 -0.82 -8.77 16 9 C 0.06 1.03 5.37 -3.76 -0.02 1.01 16 10 C 0.06 1.22 5.24 -3.76 -0.02 1.20 16 11 N -0.54 -11.70 4.92 -235.91 -1.16 -12.86 16 12 C 0.19 4.80 5.14 -4.98 -0.03 4.77 16 13 C -0.55 -15.03 7.66 -34.44 -0.26 -15.30 16 14 H 0.06 1.59 5.82 -52.48 -0.31 1.28 16 15 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 C 0.06 1.17 5.32 -3.77 -0.02 1.15 16 22 C 0.07 1.26 4.79 -3.77 -0.02 1.24 16 23 N -0.52 -7.87 8.71 -12.44 -0.11 -7.98 16 24 C 0.15 1.85 10.85 -17.57 -0.19 1.65 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.14 1.57 7.19 -52.49 -0.38 1.19 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.05 6.80 -51.93 -0.35 0.70 16 34 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.05 1.05 6.78 -51.93 -0.35 0.70 16 40 H 0.07 1.45 8.12 -51.93 -0.42 1.03 16 41 H 0.08 1.36 7.82 -51.92 -0.41 0.95 16 42 H 0.05 0.94 8.05 -51.93 -0.42 0.52 16 43 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 345.86 15.07 5.21 5.21 Total: -1.00 -31.08 345.86 -9.93 -41.02 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.76 Total: -1.25 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.64 Total: -2.21 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -1.35 Total: -55.01 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.38 Total: -4.25 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.08 -9.93 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.598 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds