Wall clock time and date at job start Tue Mar 31 2020 07:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00099 * 2 1 4 4 C 1.50702 * 109.47295 * 179.97438 * 3 2 1 5 5 C 1.38883 * 120.33837 * 270.02377 * 4 3 2 6 6 C 1.38300 * 118.50416 * 179.70476 * 5 4 3 7 7 C 1.39139 * 119.09723 * 0.55855 * 6 5 4 8 8 N 1.39000 * 119.70713 * 179.71028 * 7 6 5 9 9 C 1.46963 * 110.99679 * 303.52431 * 8 7 6 10 10 C 1.53054 * 109.36445 * 176.81259 * 9 8 7 11 11 N 1.46959 * 109.36329 * 58.40062 * 10 9 8 12 12 C 1.46900 * 110.99598 * 176.81416 * 11 10 9 13 13 C 1.50695 * 109.47391 * 58.97957 * 12 11 10 14 14 H 1.08005 * 120.00280 * 5.00587 * 13 12 11 15 15 C 1.37877 * 120.00219 * 185.01223 * 13 12 11 16 16 N 1.31516 * 120.00039 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00243 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47356 * 59.99496 * 17 15 13 19 19 H 1.48505 * 109.47093 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47238 * 299.99282 * 17 15 13 21 21 C 1.46961 * 110.87773 * 300.67898 * 11 10 9 22 22 C 1.46948 * 111.00220 * 179.72842 * 8 7 6 23 23 N 1.32396 * 120.58664 * 359.42685 * 7 6 5 24 24 C 1.31971 * 121.62402 * 0.28328 * 23 7 6 25 25 H 1.08999 * 109.47287 * 300.00154 * 1 2 3 26 26 H 1.09004 * 109.46961 * 59.99897 * 1 2 3 27 27 H 1.09002 * 109.47163 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47284 * 60.00305 * 3 2 1 29 29 H 1.08996 * 109.47678 * 299.99870 * 3 2 1 30 30 H 1.07993 * 120.74660 * 0.02562 * 5 4 3 31 31 H 1.07997 * 120.44915 * 180.28264 * 6 5 4 32 32 H 1.08999 * 109.48842 * 296.77859 * 9 8 7 33 33 H 1.09002 * 109.49184 * 56.84382 * 9 8 7 34 34 H 1.09003 * 109.48771 * 298.43563 * 10 9 8 35 35 H 1.09000 * 109.48663 * 178.36913 * 10 9 8 36 36 H 1.08997 * 109.46575 * 178.97715 * 12 11 10 37 37 H 1.08993 * 109.47293 * 298.97485 * 12 11 10 38 38 H 0.96991 * 120.00544 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.49056 * 299.35437 * 21 11 10 40 40 H 1.09001 * 109.48284 * 179.29061 * 21 11 10 41 41 H 1.09009 * 109.48724 * 303.15016 * 22 8 7 42 42 H 1.08997 * 109.49270 * 63.19581 * 22 8 7 43 43 H 1.07996 * 119.57192 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2113 1.1308 1.1996 6 6 5.5888 1.0154 1.1559 7 6 6.2252 0.9712 -0.0806 8 7 7.6096 0.8615 -0.1393 9 6 8.2563 1.9537 0.6014 10 6 9.7734 1.7530 0.5798 11 7 10.2403 1.7165 -0.8132 12 6 11.7034 1.6005 -0.8751 13 6 12.1383 0.3445 -0.1651 14 1 11.3987 -0.3440 0.2164 15 6 13.4805 0.0741 -0.0022 16 7 14.3812 0.9122 -0.4670 17 14 14.0196 -1.4825 0.8785 18 1 13.5005 -2.6681 0.1506 19 1 15.5030 -1.5386 0.9211 20 1 13.4840 -1.4784 2.2635 21 6 9.5936 0.6242 -1.5538 22 6 8.0765 0.8250 -1.5321 23 7 5.5234 1.0270 -1.2019 24 6 4.2079 1.1313 -1.1904 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.6903 1.1714 2.1447 31 1 6.1630 0.9649 2.0692 32 1 8.0088 2.9067 0.1337 33 1 7.9039 1.9522 1.6329 34 1 10.0229 0.8129 1.0717 35 1 10.2568 2.5775 1.1039 36 1 12.0206 1.5573 -1.9170 37 1 12.1572 2.4662 -0.3927 38 1 15.3254 0.7219 -0.3528 39 1 9.8410 -0.3287 -1.0860 40 1 9.9460 0.6258 -2.5852 41 1 7.5931 0.0004 -2.0562 42 1 7.8267 1.7649 -2.0242 43 1 3.6684 1.1746 -2.1250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:57 Heat of formation + Delta-G solvation = -7.921532 kcal Electronic energy + Delta-G solvation = -22943.162529 eV Core-core repulsion = 19601.955816 eV Total energy + Delta-G solvation = -3341.206713 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76942 -39.91315 -38.62392 -36.76922 -34.55606 -33.70069 -32.35084 -31.76421 -29.74533 -27.92714 -26.91423 -25.77417 -25.25612 -23.89821 -23.43499 -22.43428 -20.81081 -18.75111 -18.33541 -17.75014 -17.31929 -16.94472 -16.83031 -16.27607 -16.10541 -15.88964 -15.68702 -15.39594 -15.12854 -15.01020 -14.47249 -14.21745 -13.98007 -13.75940 -13.55080 -13.18940 -12.93446 -12.85300 -12.60129 -12.48097 -12.31477 -12.21825 -12.18396 -11.87180 -11.81646 -11.49162 -10.91108 -10.75998 -10.63969 -10.60745 -10.36030 -9.11736 -9.01936 -8.16174 -6.35165 0.07431 0.36374 1.37149 1.38396 1.46670 2.37224 2.43469 2.70324 3.08868 3.21796 3.31865 3.47885 3.89699 3.92443 3.96911 4.07375 4.14014 4.18384 4.33286 4.38734 4.45559 4.48797 4.53863 4.61235 4.62843 4.64864 4.82546 4.86565 4.91870 4.96499 5.00452 5.07056 5.17129 5.22033 5.29701 5.32149 5.55087 5.69432 5.73452 6.00880 6.14834 6.25096 6.26834 6.45001 6.84270 7.03675 7.35981 8.86519 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035642 B = 0.002865 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.405912 B = 9770.512327 C = 9986.952474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.114 3.886 4 C -0.181 4.181 5 C -0.030 4.030 6 C -0.195 4.195 7 C 0.302 3.698 8 N -0.488 5.488 9 C 0.077 3.923 10 C 0.065 3.935 11 N -0.544 5.544 12 C 0.201 3.799 13 C -0.556 4.556 14 H 0.055 0.945 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.957 3.043 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.269 1.269 21 C 0.064 3.936 22 C 0.091 3.909 23 N -0.548 5.548 24 C 0.135 3.865 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.164 0.836 31 H 0.150 0.850 32 H 0.048 0.952 33 H 0.108 0.892 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.004 0.996 37 H 0.012 0.988 38 H 0.265 0.735 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.759 2.061 3.646 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.038 3.962 4 C -0.184 4.184 5 C -0.056 4.056 6 C -0.217 4.217 7 C 0.071 3.929 8 N -0.205 5.205 9 C -0.049 4.049 10 C -0.064 4.064 11 N -0.268 5.268 12 C 0.074 3.926 13 C -0.595 4.595 14 H 0.073 0.927 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.782 3.218 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.065 4.065 22 C -0.037 4.037 23 N -0.262 5.262 24 C -0.023 4.023 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.182 0.818 31 H 0.168 0.832 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.022 0.978 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -26.915 1.915 2.829 27.131 hybrid contribution 0.514 -0.769 0.917 1.302 sum -26.401 1.146 3.746 26.690 Atomic orbital electron populations 1.22925 0.79291 1.03651 1.01193 1.87945 1.21514 1.28494 1.95667 1.21231 0.87453 0.84826 1.02691 1.20683 0.96718 1.06864 0.94146 1.21658 0.92789 0.91907 0.99261 1.21751 0.95845 1.06553 0.97551 1.20148 0.89628 0.92795 0.90300 1.59256 1.02152 1.43244 1.15894 1.22333 0.93201 0.90283 0.99045 1.21977 0.93311 1.00845 0.90252 1.62652 1.07766 1.43509 1.12847 1.19399 0.83032 0.94932 0.95218 1.21912 0.92215 1.07753 1.37587 0.92682 1.25795 0.96866 0.99787 0.96238 1.70048 1.01453 1.37990 1.46965 0.85632 0.77145 0.79782 0.79274 1.19844 1.20598 1.19385 1.22014 0.92920 0.93136 0.98466 1.21845 0.93286 1.01702 0.86823 1.67643 1.09922 1.17825 1.30804 1.22798 0.88417 0.92185 0.98850 0.92711 0.92845 0.89148 0.90477 0.90721 0.81850 0.83240 0.93325 0.87376 0.95018 0.90506 0.97794 0.96975 0.92558 0.95682 0.91144 0.89944 0.93308 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -7.15 10.69 -148.98 -1.59 -8.74 16 3 C 0.11 1.53 6.08 71.24 0.43 1.97 16 4 C -0.18 -3.44 5.53 -19.76 -0.11 -3.55 16 5 C -0.03 -0.56 9.85 22.44 0.22 -0.34 16 6 C -0.19 -4.51 9.22 22.50 0.21 -4.31 16 7 C 0.30 8.87 6.40 133.07 0.85 9.72 16 8 N -0.49 -16.10 4.73 -701.37 -3.32 -19.42 16 9 C 0.08 2.39 5.37 86.31 0.46 2.85 16 10 C 0.06 2.54 5.24 86.31 0.45 2.99 16 11 N -0.54 -24.15 4.92 -900.28 -4.43 -28.58 16 12 C 0.20 10.74 5.14 85.56 0.44 11.18 16 13 C -0.56 -31.19 7.66 25.60 0.20 -30.99 16 14 H 0.06 3.08 5.82 -2.91 -0.02 3.06 16 15 C 0.01 0.72 5.46 84.65 0.46 1.18 16 16 N -0.92 -55.36 13.29 21.45 0.28 -55.07 16 17 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.06 2.62 5.32 86.31 0.46 3.08 16 22 C 0.09 3.19 4.79 86.31 0.41 3.61 16 23 N -0.55 -15.96 8.71 -193.27 -1.68 -17.65 16 24 C 0.14 3.07 10.85 84.62 0.92 3.99 16 25 H 0.05 0.37 8.14 -2.39 -0.02 0.36 16 26 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.73 8.09 -2.38 -0.02 0.71 16 29 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.15 3.00 7.19 -2.91 -0.02 2.98 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.11 2.69 6.80 -2.39 -0.02 2.68 16 34 H 0.03 1.38 6.62 -2.39 -0.02 1.36 16 35 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.00 0.23 8.12 -2.39 -0.02 0.21 16 37 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.02 1.14 6.78 -2.39 -0.02 1.12 16 40 H 0.07 2.89 8.12 -2.39 -0.02 2.87 16 41 H 0.08 2.84 7.82 -2.38 -0.02 2.82 16 42 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 43 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -68.15 345.86 -1.07 -69.22 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.99 Total: 10.84 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 6.66 Total: 2.87 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -9.14 Total: -120.71 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -1.59 Total: -8.74 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.15 -1.07 -69.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.299 kcal (2) G-P(sol) polarization free energy of solvation -68.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds