Wall clock time and date at job start Tue Mar 31 2020 06:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.46814 * 2 1 4 4 C 1.36008 * 116.99914 * 180.02562 * 3 2 1 5 5 C 1.38701 * 120.49821 * 359.97412 * 4 3 2 6 6 C 1.38854 * 118.46049 * 180.02562 * 5 4 3 7 7 C 1.38013 * 119.37071 * 0.02562 * 6 5 4 8 8 N 1.32021 * 120.94944 * 359.74605 * 7 6 5 9 9 C 1.32300 * 121.67988 * 0.51823 * 8 7 6 10 10 N 1.39245 * 119.73518 * 179.75329 * 9 8 7 11 11 C 1.46961 * 110.99746 * 359.72804 * 10 9 8 12 12 C 1.53059 * 109.36302 * 183.18534 * 11 10 9 13 13 N 1.46952 * 109.36370 * 301.60193 * 12 11 10 14 14 C 1.46906 * 110.99889 * 183.18679 * 13 12 11 15 15 C 1.50701 * 109.46965 * 170.00017 * 14 13 12 16 16 H 1.08005 * 120.00268 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99915 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99666 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00290 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46970 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47088 * 119.99589 * 19 17 15 22 22 H 1.48494 * 109.47293 * 239.99660 * 19 17 15 23 23 C 1.46961 * 110.88410 * 59.32054 * 13 12 11 24 24 C 1.46955 * 111.00095 * 123.52857 * 10 9 8 25 25 H 1.09004 * 109.46500 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46847 * 299.99654 * 1 2 3 27 27 H 1.08996 * 109.47549 * 59.99733 * 1 2 3 28 28 H 1.08997 * 109.46847 * 240.00346 * 2 1 3 29 29 H 1.08990 * 109.47320 * 119.99888 * 2 1 3 30 30 H 1.07997 * 120.76828 * 0.02562 * 5 4 3 31 31 H 1.07997 * 120.31801 * 180.02562 * 6 5 4 32 32 H 1.07996 * 119.52509 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.48904 * 63.22166 * 11 10 9 34 34 H 1.08997 * 109.51213 * 303.16452 * 11 10 9 35 35 H 1.08999 * 109.48651 * 181.63251 * 12 11 10 36 36 H 1.08996 * 109.48556 * 61.57139 * 12 11 10 37 37 H 1.08993 * 109.47164 * 289.99960 * 14 13 12 38 38 H 1.08996 * 109.46920 * 49.99994 * 14 13 12 39 39 H 0.97001 * 119.99343 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.48904 * 60.64354 * 23 13 12 41 41 H 1.09002 * 109.49205 * 180.70887 * 23 13 12 42 42 H 1.09008 * 109.48713 * 296.78249 * 24 10 9 43 43 H 1.09002 * 109.48661 * 56.82212 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3547 1.5256 -0.0005 5 6 4.2092 0.4330 -0.0005 6 6 5.5784 0.6638 -0.0005 7 6 6.0459 1.9624 0.0000 8 7 5.2107 2.9847 -0.0046 9 6 3.8992 2.8105 0.0005 10 7 3.0553 3.9181 0.0006 11 6 3.8276 5.1685 0.0012 12 6 2.8675 6.3578 0.0816 13 7 1.9417 6.3146 -1.0587 14 6 1.0514 7.4831 -1.0587 15 6 0.2913 7.5356 -2.3589 16 1 0.4536 6.7770 -3.1103 17 6 -0.6106 8.5526 -2.5896 18 7 -0.8079 9.4766 -1.6747 19 14 -1.5534 8.6173 -4.2009 20 1 -1.1532 7.4703 -5.0550 21 1 -3.0108 8.5448 -3.9250 22 1 -1.2454 9.8885 -4.9039 23 6 1.1694 5.0642 -1.0594 24 6 2.1294 3.8749 -1.1398 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8186 -0.5739 -0.0005 31 1 6.2709 -0.1649 -0.0009 32 1 7.1104 2.1447 0.0004 33 1 4.4128 5.2349 -0.9160 34 1 4.4968 5.1826 0.8614 35 1 3.4366 7.2870 0.0530 36 1 2.3017 6.3061 1.0117 37 1 0.3482 7.4041 -0.2297 38 1 1.6438 8.3912 -0.9472 39 1 -1.4427 10.1919 -1.8369 40 1 0.5842 4.9978 -0.1422 41 1 0.5004 5.0503 -1.9198 42 1 2.6954 3.9266 -2.0699 43 1 1.5607 2.9455 -1.1113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165058431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:44 Heat of formation + Delta-G solvation = 0.130777 kcal Electronic energy + Delta-G solvation = -23705.897598 eV Core-core repulsion = 20365.040060 eV Total energy + Delta-G solvation = -3340.857539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.01647 -39.94286 -39.11011 -36.68610 -34.60914 -33.18104 -32.41399 -31.92376 -30.81616 -29.15840 -26.85347 -25.63005 -24.40424 -23.68970 -23.30479 -22.57922 -20.77719 -19.26220 -18.53364 -18.26041 -17.80528 -17.11601 -16.78831 -16.12502 -15.91375 -15.89303 -15.52607 -15.40323 -15.08849 -14.96792 -14.43514 -14.24436 -13.91516 -13.60207 -13.43108 -13.30693 -13.15041 -13.04986 -12.72768 -12.58831 -12.35579 -12.34761 -12.08168 -12.04225 -11.78413 -11.49424 -11.24477 -10.97698 -10.62236 -10.55314 -10.16605 -9.09539 -8.74096 -8.20646 -6.31149 0.18328 0.32618 1.41235 1.42095 1.55886 2.16741 2.40428 2.48556 2.88375 3.11320 3.24622 3.54715 3.81271 3.84556 4.04608 4.08633 4.10647 4.15108 4.22910 4.27969 4.31315 4.39732 4.42431 4.50112 4.65386 4.81996 4.84204 4.89220 4.93717 4.96707 4.99539 5.05181 5.14576 5.18916 5.24344 5.27473 5.53194 5.62630 5.71659 5.94336 6.02971 6.27727 6.48355 6.57108 6.84120 7.05406 7.38563 8.91077 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.003982 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.016696 B = 7029.884947 C = 7986.034065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 O -0.321 6.321 4 C 0.055 3.945 5 C -0.144 4.144 6 C -0.151 4.151 7 C 0.072 3.928 8 N -0.512 5.512 9 C 0.262 3.738 10 N -0.479 5.479 11 C 0.091 3.909 12 C 0.054 3.946 13 N -0.544 5.544 14 C 0.208 3.792 15 C -0.523 4.523 16 H 0.063 0.937 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.074 3.926 24 C 0.078 3.922 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.170 0.830 31 H 0.175 0.825 32 H 0.183 0.817 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.022 0.978 37 H -0.038 1.038 38 H 0.006 0.994 39 H 0.265 0.735 40 H 0.020 0.980 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.102 -24.288 3.685 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.234 6.234 4 C 0.005 3.995 5 C -0.171 4.171 6 C -0.171 4.171 7 C -0.085 4.085 8 N -0.227 5.227 9 C 0.029 3.971 10 N -0.198 5.198 11 C -0.036 4.036 12 C -0.075 4.075 13 N -0.270 5.270 14 C 0.082 3.918 15 C -0.561 4.561 16 H 0.081 0.919 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.055 4.055 24 C -0.048 4.048 25 H 0.122 0.878 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.187 0.813 31 H 0.192 0.808 32 H 0.200 0.800 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.041 0.959 37 H -0.020 1.020 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.112 -23.099 3.707 25.487 hybrid contribution -0.982 -0.146 -0.261 1.027 sum 9.130 -23.245 3.446 25.210 Atomic orbital electron populations 1.21808 0.92179 1.04058 1.02831 1.23102 0.96537 0.80900 1.02520 1.86222 1.17666 1.31068 1.88481 1.19569 0.84435 0.93373 1.02147 1.21931 0.94122 0.98756 1.02253 1.22249 0.95403 0.98933 1.00563 1.23010 1.00188 0.88161 0.97107 1.67657 1.01796 1.37396 1.15861 1.19505 0.88546 0.88851 1.00183 1.59336 1.17520 1.01632 1.41263 1.21831 0.93812 0.86025 1.01927 1.22216 0.94984 0.98491 0.91798 1.62250 1.20343 1.03031 1.41334 1.19377 0.89484 0.87671 0.95256 1.21460 1.22006 1.10653 1.01998 0.91863 1.25933 0.97929 0.94932 1.00810 1.70105 1.36667 1.14603 1.36159 0.85299 0.77971 0.78317 0.78813 1.18665 1.20264 1.20366 1.21938 0.94792 0.88476 1.00252 1.22251 0.93826 0.99518 0.89244 0.87830 0.92571 0.92363 0.90528 0.90642 0.81293 0.80800 0.80009 0.93696 0.89153 0.90291 0.95923 1.02018 0.97572 0.92641 0.96218 0.90383 0.94622 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.04 0.67 5.48 71.98 0.39 1.07 16 3 O -0.32 -8.04 7.42 -93.64 -0.69 -8.73 16 4 C 0.05 1.40 6.43 22.70 0.15 1.55 16 5 C -0.14 -2.51 9.14 22.53 0.21 -2.30 16 6 C -0.15 -2.27 10.10 22.36 0.23 -2.05 16 7 C 0.07 1.44 11.17 84.61 0.95 2.38 16 8 N -0.51 -14.70 8.71 -192.78 -1.68 -16.38 16 9 C 0.26 8.12 6.42 133.11 0.85 8.98 16 10 N -0.48 -16.94 4.66 -700.75 -3.26 -20.21 16 11 C 0.09 3.28 4.79 86.31 0.41 3.69 16 12 C 0.05 2.20 5.61 86.31 0.48 2.69 16 13 N -0.54 -25.78 4.70 -900.27 -4.23 -30.01 16 14 C 0.21 11.73 4.72 85.56 0.40 12.13 16 15 C -0.52 -30.59 8.47 25.60 0.22 -30.37 16 16 H 0.06 3.63 7.13 -2.91 -0.02 3.61 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 19 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 C 0.07 3.18 5.43 86.31 0.47 3.65 16 24 C 0.08 2.81 5.27 86.31 0.46 3.26 16 25 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 0.90 7.70 -2.39 -0.02 0.88 16 29 H 0.08 0.90 7.70 -2.39 -0.02 0.88 16 30 H 0.17 1.75 6.44 -2.91 -0.02 1.73 16 31 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.04 1.68 8.05 -2.39 -0.02 1.67 16 34 H 0.09 3.02 7.83 -2.39 -0.02 3.00 16 35 H 0.08 3.13 8.07 -2.39 -0.02 3.11 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 38 H 0.01 0.37 8.03 -2.39 -0.02 0.35 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 3.50 6.79 -2.39 -0.02 3.48 16 42 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.11 3.58 5.47 -2.39 -0.01 3.57 16 Total: -1.00 -72.24 343.01 -0.16 -72.39 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.99 Total: 9.30 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.42 Total: 3.80 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -8.89 Total: -123.82 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.69 Total: -8.73 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -72.24 -0.16 -72.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165058431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.523 kcal (2) G-P(sol) polarization free energy of solvation -72.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds