Wall clock time and date at job start Tue Mar 31 2020 07:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36918 * 120.00111 * 2 1 4 4 H 1.07997 * 120.00286 * 157.02004 * 3 2 1 5 5 C 1.38810 * 119.99604 * 336.73521 * 3 2 1 6 6 N 1.31572 * 120.00148 * 348.05980 * 5 3 2 7 7 Si 1.86798 * 120.00038 * 168.05268 * 5 3 2 8 8 H 1.48495 * 109.47101 * 94.97002 * 7 5 3 9 9 H 1.48501 * 109.47417 * 214.97250 * 7 5 3 10 10 H 1.48506 * 109.47301 * 334.97222 * 7 5 3 11 11 C 1.38828 * 120.00279 * 179.97438 * 2 1 3 12 12 C 1.39112 * 119.67486 * 184.72427 * 11 2 1 13 13 C 1.38475 * 119.20935 * 179.79208 * 12 11 2 14 14 C 1.38632 * 118.57053 * 0.48377 * 13 12 11 15 15 C 1.38843 * 119.28559 * 359.73970 * 14 13 12 16 16 O 1.35672 * 119.63129 * 180.02562 * 15 14 13 17 17 C 1.42901 * 116.99880 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.46824 * 180.02562 * 17 16 15 19 19 N 1.46900 * 109.47340 * 64.99984 * 18 17 16 20 20 C 1.48529 * 111.00116 * 52.60253 * 19 18 17 21 21 C 1.54934 * 103.22850 * 159.72262 * 20 19 18 22 22 C 1.54590 * 102.92121 * 322.58637 * 21 20 19 23 23 C 1.47904 * 110.99982 * 169.99756 * 19 18 17 24 24 N 1.32275 * 120.73760 * 0.02958 * 15 14 13 25 25 H 1.09001 * 109.47016 * 84.43664 * 1 2 3 26 26 H 1.08998 * 109.47027 * 204.42806 * 1 2 3 27 27 H 1.08990 * 109.47844 * 324.43233 * 1 2 3 28 28 H 0.97002 * 119.99931 * 179.97438 * 6 5 3 29 29 H 1.07997 * 120.39700 * 0.02562 * 12 11 2 30 30 H 1.08000 * 120.71146 * 180.20362 * 13 12 11 31 31 H 1.07996 * 120.35796 * 179.77148 * 14 13 12 32 32 H 1.09003 * 109.46908 * 300.00046 * 17 16 15 33 33 H 1.08993 * 109.47365 * 59.99772 * 17 16 15 34 34 H 1.09007 * 109.47020 * 184.99735 * 18 17 16 35 35 H 1.08997 * 109.46906 * 304.99745 * 18 17 16 36 36 H 1.09012 * 110.66737 * 278.15714 * 20 19 18 37 37 H 1.09001 * 110.67019 * 41.28722 * 20 19 18 38 38 H 1.09007 * 110.72578 * 204.22459 * 21 20 19 39 39 H 1.09000 * 110.72536 * 80.94198 * 21 20 19 40 40 H 1.09007 * 110.30662 * 263.03934 * 22 21 20 41 41 H 1.09003 * 110.39411 * 140.91945 * 22 21 20 42 42 H 1.08997 * 109.91973 * 333.51133 * 23 19 18 43 43 H 1.09002 * 109.91304 * 94.60787 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.1652 1.2229 0.3651 5 6 1.5401 2.3389 -0.4748 6 7 0.4057 2.2589 -1.1366 7 14 2.3303 4.0046 -0.1742 8 1 3.1553 4.3806 -1.3502 9 1 1.2714 5.0246 0.0342 10 1 3.1927 3.9328 1.0327 11 6 2.1591 -1.2023 0.0005 12 6 3.5467 -1.1963 0.1001 13 6 4.2291 -2.4012 0.1041 14 6 3.5007 -3.5760 -0.0021 15 6 2.1175 -3.5108 -0.1031 16 8 1.3977 -4.6561 -0.2069 17 6 -0.0215 -4.5235 -0.3083 18 6 -0.6570 -5.9112 -0.4154 19 7 -0.4240 -6.6540 0.8303 20 6 -0.8615 -5.8650 2.0103 21 6 -1.0428 -6.9419 3.1094 22 6 -1.6277 -8.1398 2.3266 23 6 -1.2199 -7.9003 0.8611 24 7 1.4936 -2.3444 -0.0995 25 1 -0.3633 0.0996 -1.0228 26 1 -0.3633 -0.9357 0.4250 27 1 -0.3634 0.8358 0.5977 28 1 -0.0203 3.0648 -1.4681 29 1 4.0850 -0.2632 0.1772 30 1 5.3059 -2.4250 0.1836 31 1 4.0037 -4.5317 -0.0057 32 1 -0.4033 -4.0169 0.5782 33 1 -0.2695 -3.9404 -1.1951 34 1 -1.7293 -5.8079 -0.5817 35 1 -0.2103 -6.4519 -1.2498 36 1 -0.0942 -5.1464 2.2986 37 1 -1.8059 -5.3602 1.8069 38 1 -1.7429 -6.6006 3.8721 39 1 -0.0831 -7.2038 3.5548 40 1 -2.7137 -8.1581 2.4189 41 1 -1.2019 -9.0752 2.6898 42 1 -2.1097 -7.7880 0.2416 43 1 -0.6183 -8.7340 0.4990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165091967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:25 Heat of formation + Delta-G solvation = 23.666303 kcal Electronic energy + Delta-G solvation = -23288.143614 eV Core-core repulsion = 19948.306652 eV Total energy + Delta-G solvation = -3339.836962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.65944 -38.92653 -37.41372 -35.47903 -32.85921 -32.03434 -30.89920 -29.23265 -28.72562 -27.67480 -26.33982 -24.21916 -23.05534 -21.86479 -21.00321 -20.93192 -20.22438 -18.10721 -16.74145 -16.40398 -16.11143 -16.00965 -15.12867 -14.93896 -14.67425 -14.24756 -14.08777 -13.69797 -13.56966 -13.35318 -12.94898 -12.75560 -12.30362 -12.24956 -11.98346 -11.62120 -11.50956 -11.35514 -11.22087 -11.16678 -11.12574 -10.85264 -10.81304 -10.68231 -10.43648 -10.33966 -10.19744 -9.34212 -8.88263 -8.48465 -8.39050 -8.16283 -6.75128 -6.37984 -3.88726 2.49241 2.52082 3.11955 3.14738 3.18675 3.70228 3.94662 3.98685 4.53544 4.60906 4.72997 4.74673 4.83106 5.15201 5.17684 5.18304 5.29002 5.40421 5.50485 5.57300 5.63353 5.65384 5.72510 5.86435 5.90412 5.99854 6.05401 6.06279 6.17421 6.31747 6.35601 6.56752 6.72657 6.85064 6.93221 6.99435 7.10228 7.28798 7.30605 7.44547 7.49923 7.77198 8.21370 8.50291 8.97130 9.21946 9.69260 10.55536 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024230 B = 0.003476 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.311696 B = 8054.071845 C = 8625.562383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.421 5.421 3 C -0.310 4.310 4 H 0.100 0.900 5 C 0.031 3.969 6 N -0.870 5.870 7 Si 0.930 3.070 8 H -0.276 1.276 9 H -0.281 1.281 10 H -0.268 1.268 11 C 0.401 3.599 12 C -0.283 4.283 13 C -0.010 4.010 14 C -0.313 4.313 15 C 0.367 3.633 16 O -0.301 6.301 17 C 0.076 3.924 18 C 0.047 3.953 19 N -0.509 5.509 20 C 0.032 3.968 21 C -0.123 4.123 22 C -0.130 4.130 23 C 0.034 3.966 24 N -0.621 5.621 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.270 0.730 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -13.785 4.277 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.110 5.110 3 C -0.439 4.439 4 H 0.117 0.883 5 C -0.174 4.174 6 N -0.505 5.505 7 Si 0.756 3.244 8 H -0.202 1.202 9 H -0.206 1.206 10 H -0.192 1.192 11 C 0.160 3.840 12 C -0.309 4.309 13 C -0.035 4.035 14 C -0.339 4.339 15 C 0.184 3.816 16 O -0.208 6.208 17 C 0.000 4.000 18 C -0.081 4.081 19 N -0.233 5.233 20 C -0.095 4.095 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.094 4.094 24 N -0.359 5.359 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.254 -13.650 4.107 14.876 hybrid contribution 0.027 1.247 -0.092 1.250 sum -4.228 -12.403 4.015 13.705 Atomic orbital electron populations 1.21315 0.79965 0.98266 1.01786 1.42504 1.04968 1.01174 1.62359 1.19651 1.00048 0.83857 1.40338 0.88256 1.25412 0.96650 1.00268 0.95103 1.70107 1.17584 1.29654 1.33191 0.85853 0.78739 0.80804 0.79001 1.20197 1.20617 1.19195 1.17970 0.88090 0.84927 0.92994 1.21023 0.93516 0.98392 1.17984 1.20779 0.98362 0.91395 0.92982 1.20119 0.90921 0.98723 1.24110 1.19297 0.88338 0.83872 0.90070 1.86261 1.19070 1.27663 1.87782 1.22467 0.79926 0.95294 1.02335 1.22426 0.98019 0.94169 0.93503 1.64821 1.52250 1.04251 1.02001 1.23272 0.99289 0.96401 0.90557 1.22474 1.01416 0.94965 0.97302 1.22389 1.00362 0.99182 0.94920 1.22891 0.95934 0.94047 0.96539 1.66600 1.40642 0.97297 1.31323 0.92404 0.94359 0.92689 0.91991 0.85833 0.86446 0.86786 0.91903 0.91563 0.93006 0.89685 0.89590 0.93839 0.91197 0.90655 0.91746 0.91114 0.94024 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.17 8.73 59.84 0.52 3.70 16 2 N -0.42 -10.87 3.12 -122.46 -0.38 -11.25 16 3 C -0.31 -8.06 9.09 -15.07 -0.14 -8.20 16 4 H 0.10 2.48 6.01 -52.49 -0.32 2.16 16 5 C 0.03 0.79 5.12 -17.45 -0.09 0.70 16 6 N -0.87 -22.89 10.66 55.49 0.59 -22.29 16 7 Si 0.93 19.56 29.57 -169.99 -5.03 14.54 16 8 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 9 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 10 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 11 C 0.40 9.86 7.33 -155.06 -1.14 8.72 16 12 C -0.28 -6.35 9.31 -39.17 -0.36 -6.72 16 13 C -0.01 -0.20 10.16 -39.35 -0.40 -0.60 16 14 C -0.31 -6.28 10.04 -39.21 -0.39 -6.67 16 15 C 0.37 7.86 7.49 -17.14 -0.13 7.73 16 16 O -0.30 -5.76 10.06 -18.72 -0.19 -5.95 16 17 C 0.08 1.24 5.13 37.16 0.19 1.43 16 18 C 0.05 0.61 5.41 -3.82 -0.02 0.59 16 19 N -0.51 -6.58 5.34 -230.45 -1.23 -7.81 16 20 C 0.03 0.40 5.08 -1.90 -0.01 0.39 16 21 C -0.12 -1.23 7.06 -24.87 -0.18 -1.41 16 22 C -0.13 -1.15 6.93 -25.38 -0.18 -1.33 16 23 C 0.03 0.35 6.70 -2.75 -0.02 0.33 16 24 N -0.62 -14.43 7.91 -12.50 -0.10 -14.53 16 25 H 0.06 1.49 7.31 -51.93 -0.38 1.11 16 26 H 0.04 0.87 7.27 -51.93 -0.38 0.49 16 27 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 28 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.12 2.71 6.08 -52.49 -0.32 2.39 16 30 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.11 2.06 8.06 -52.49 -0.42 1.63 16 32 H 0.06 1.06 6.48 -51.93 -0.34 0.72 16 33 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.05 0.58 7.81 -51.93 -0.41 0.17 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.24 7.56 -51.92 -0.39 0.84 16 37 H 0.04 0.51 8.01 -51.93 -0.42 0.10 16 38 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.04 0.39 7.57 -51.93 -0.39 0.00 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -28.45 344.41 -10.14 -38.59 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.66 Total: 4.88 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.34 Total: -1.35 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -1.12 Total: -55.89 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.19 Total: -5.95 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.45 -10.14 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165091967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.255 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds