Wall clock time and date at job start Tue Mar 31 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36918 * 120.00111 * 2 1 4 4 H 1.07997 * 120.00286 * 157.02004 * 3 2 1 5 5 C 1.38810 * 119.99604 * 336.73521 * 3 2 1 6 6 N 1.31572 * 120.00148 * 348.05980 * 5 3 2 7 7 Si 1.86798 * 120.00038 * 168.05268 * 5 3 2 8 8 H 1.48495 * 109.47101 * 94.97002 * 7 5 3 9 9 H 1.48501 * 109.47417 * 214.97250 * 7 5 3 10 10 H 1.48506 * 109.47301 * 334.97222 * 7 5 3 11 11 C 1.38828 * 120.00279 * 179.97438 * 2 1 3 12 12 C 1.39112 * 119.67486 * 184.72427 * 11 2 1 13 13 C 1.38475 * 119.20935 * 179.79208 * 12 11 2 14 14 C 1.38632 * 118.57053 * 0.48377 * 13 12 11 15 15 C 1.38843 * 119.28559 * 359.73970 * 14 13 12 16 16 O 1.35672 * 119.63129 * 180.02562 * 15 14 13 17 17 C 1.42901 * 116.99880 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.46824 * 180.02562 * 17 16 15 19 19 N 1.46900 * 109.47340 * 64.99984 * 18 17 16 20 20 C 1.48529 * 111.00116 * 52.60253 * 19 18 17 21 21 C 1.54934 * 103.22850 * 159.72262 * 20 19 18 22 22 C 1.54590 * 102.92121 * 322.58637 * 21 20 19 23 23 C 1.47904 * 110.99982 * 169.99756 * 19 18 17 24 24 N 1.32275 * 120.73760 * 0.02958 * 15 14 13 25 25 H 1.09001 * 109.47016 * 84.43664 * 1 2 3 26 26 H 1.08998 * 109.47027 * 204.42806 * 1 2 3 27 27 H 1.08990 * 109.47844 * 324.43233 * 1 2 3 28 28 H 0.97002 * 119.99931 * 179.97438 * 6 5 3 29 29 H 1.07997 * 120.39700 * 0.02562 * 12 11 2 30 30 H 1.08000 * 120.71146 * 180.20362 * 13 12 11 31 31 H 1.07996 * 120.35796 * 179.77148 * 14 13 12 32 32 H 1.09003 * 109.46908 * 300.00046 * 17 16 15 33 33 H 1.08993 * 109.47365 * 59.99772 * 17 16 15 34 34 H 1.09007 * 109.47020 * 184.99735 * 18 17 16 35 35 H 1.08997 * 109.46906 * 304.99745 * 18 17 16 36 36 H 1.09012 * 110.66737 * 278.15714 * 20 19 18 37 37 H 1.09001 * 110.67019 * 41.28722 * 20 19 18 38 38 H 1.09007 * 110.72578 * 204.22459 * 21 20 19 39 39 H 1.09000 * 110.72536 * 80.94198 * 21 20 19 40 40 H 1.09007 * 110.30662 * 263.03934 * 22 21 20 41 41 H 1.09003 * 110.39411 * 140.91945 * 22 21 20 42 42 H 1.08997 * 109.91973 * 333.51133 * 23 19 18 43 43 H 1.09002 * 109.91304 * 94.60787 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.1652 1.2229 0.3651 5 6 1.5401 2.3389 -0.4748 6 7 0.4057 2.2589 -1.1366 7 14 2.3303 4.0046 -0.1742 8 1 3.1553 4.3806 -1.3502 9 1 1.2714 5.0246 0.0342 10 1 3.1927 3.9328 1.0327 11 6 2.1591 -1.2023 0.0005 12 6 3.5467 -1.1963 0.1001 13 6 4.2291 -2.4012 0.1041 14 6 3.5007 -3.5760 -0.0021 15 6 2.1175 -3.5108 -0.1031 16 8 1.3977 -4.6561 -0.2069 17 6 -0.0215 -4.5235 -0.3083 18 6 -0.6570 -5.9112 -0.4154 19 7 -0.4240 -6.6540 0.8303 20 6 -0.8615 -5.8650 2.0103 21 6 -1.0428 -6.9419 3.1094 22 6 -1.6277 -8.1398 2.3266 23 6 -1.2199 -7.9003 0.8611 24 7 1.4936 -2.3444 -0.0995 25 1 -0.3633 0.0996 -1.0228 26 1 -0.3633 -0.9357 0.4250 27 1 -0.3634 0.8358 0.5977 28 1 -0.0203 3.0648 -1.4681 29 1 4.0850 -0.2632 0.1772 30 1 5.3059 -2.4250 0.1836 31 1 4.0037 -4.5317 -0.0057 32 1 -0.4033 -4.0169 0.5782 33 1 -0.2695 -3.9404 -1.1951 34 1 -1.7293 -5.8079 -0.5817 35 1 -0.2103 -6.4519 -1.2498 36 1 -0.0942 -5.1464 2.2986 37 1 -1.8059 -5.3602 1.8069 38 1 -1.7429 -6.6006 3.8721 39 1 -0.0831 -7.2038 3.5548 40 1 -2.7137 -8.1581 2.4189 41 1 -1.2019 -9.0752 2.6898 42 1 -2.1097 -7.7880 0.2416 43 1 -0.6183 -8.7340 0.4990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165091967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:24 Heat of formation + Delta-G solvation = 6.448383 kcal Electronic energy + Delta-G solvation = -23288.890239 eV Core-core repulsion = 19948.306652 eV Total energy + Delta-G solvation = -3340.583587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26584 -40.04672 -38.94892 -37.22240 -34.05317 -33.71731 -32.64692 -30.55490 -29.88444 -28.99563 -28.16544 -25.99673 -24.31533 -23.45492 -22.63002 -21.71512 -21.39469 -19.79983 -18.55828 -17.86119 -17.41456 -17.08486 -16.74466 -16.41928 -16.23711 -15.78194 -15.49766 -15.14849 -15.02434 -14.61556 -14.32472 -14.03439 -13.80209 -13.69309 -13.30987 -13.06805 -12.97200 -12.83338 -12.65140 -12.54522 -12.26520 -12.24784 -12.11672 -12.04015 -11.92390 -11.73218 -11.42698 -11.13718 -10.63504 -10.21641 -9.95648 -9.36584 -8.57812 -8.24324 -5.84649 0.76478 0.82165 1.43164 1.47280 1.56638 2.18720 2.29762 2.89527 2.93779 3.00681 3.36976 3.68194 3.74257 3.92789 4.01937 4.15334 4.15671 4.31867 4.36329 4.51432 4.53167 4.61165 4.65675 4.68058 4.72655 4.78574 4.86537 4.92162 4.94325 4.97277 4.99612 5.05953 5.18883 5.28749 5.31656 5.36370 5.43457 5.70779 5.84027 5.92522 5.95426 6.06082 6.45211 6.70525 7.14957 7.34900 7.84225 8.68955 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024230 B = 0.003476 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.311696 B = 8054.071845 C = 8625.562383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.153 3.847 2 N -0.450 5.450 3 C -0.332 4.332 4 H 0.103 0.897 5 C -0.015 4.015 6 N -0.905 5.905 7 Si 1.000 3.000 8 H -0.273 1.273 9 H -0.279 1.279 10 H -0.259 1.259 11 C 0.383 3.617 12 C -0.302 4.302 13 C 0.004 3.996 14 C -0.303 4.303 15 C 0.351 3.649 16 O -0.301 6.301 17 C 0.077 3.923 18 C 0.056 3.944 19 N -0.529 5.529 20 C 0.031 3.969 21 C -0.121 4.121 22 C -0.125 4.125 23 C 0.032 3.968 24 N -0.634 5.634 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.271 0.729 29 H 0.124 0.876 30 H 0.163 0.837 31 H 0.142 0.858 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 -15.490 4.818 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.143 5.143 3 C -0.460 4.460 4 H 0.121 0.879 5 C -0.216 4.216 6 N -0.542 5.542 7 Si 0.822 3.178 8 H -0.199 1.199 9 H -0.204 1.204 10 H -0.183 1.183 11 C 0.144 3.856 12 C -0.329 4.329 13 C -0.021 4.021 14 C -0.328 4.328 15 C 0.169 3.831 16 O -0.208 6.208 17 C 0.001 3.999 18 C -0.072 4.072 19 N -0.254 5.254 20 C -0.097 4.097 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.096 4.096 24 N -0.372 5.372 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.142 0.858 30 H 0.180 0.820 31 H 0.160 0.840 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.326 -15.423 4.654 16.450 hybrid contribution -0.199 1.508 -0.262 1.544 sum -3.525 -13.915 4.393 15.011 Atomic orbital electron populations 1.20986 0.80211 0.97909 1.00026 1.42616 1.05026 1.01678 1.64933 1.19942 1.00541 0.84508 1.41005 0.87938 1.26308 0.97166 1.03525 0.94609 1.70226 1.19016 1.30447 1.34499 0.84813 0.77805 0.76142 0.79007 1.19902 1.20415 1.18284 1.18395 0.89207 0.84997 0.92986 1.21212 0.92847 0.99783 1.19023 1.21249 1.00502 0.89872 0.90435 1.20600 0.90474 1.00202 1.21525 1.19722 0.89455 0.83877 0.90052 1.86271 1.20496 1.26618 1.87441 1.22601 0.78541 0.97575 1.01181 1.22364 0.98774 0.92073 0.94002 1.64788 1.53605 1.05217 1.01789 1.23215 0.98294 0.96682 0.91506 1.22468 1.01686 0.94744 0.96974 1.22391 1.01299 0.98962 0.93610 1.22973 0.96113 0.92662 0.97806 1.66576 1.41427 0.97707 1.31510 0.94719 0.93702 0.93871 0.91993 0.85785 0.81988 0.84027 0.93051 0.92740 0.90934 0.89123 0.92516 0.93614 0.89807 0.91262 0.90255 0.89905 0.92924 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.81 8.73 127.77 1.12 8.92 16 2 N -0.45 -24.01 3.12 -541.34 -1.69 -25.70 16 3 C -0.33 -17.66 9.09 84.04 0.76 -16.90 16 4 H 0.10 5.19 6.01 -2.91 -0.02 5.17 16 5 C -0.01 -0.76 5.12 84.87 0.43 -0.32 16 6 N -0.90 -49.19 10.66 21.65 0.23 -48.96 16 7 Si 1.00 40.54 29.57 68.60 2.03 42.57 16 8 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 9 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 11 C 0.38 19.12 7.33 133.07 0.98 20.10 16 12 C -0.30 -13.39 9.31 22.54 0.21 -13.18 16 13 C 0.00 0.15 10.16 22.42 0.23 0.38 16 14 C -0.30 -11.41 10.04 22.51 0.23 -11.19 16 15 C 0.35 14.81 7.49 84.77 0.63 15.45 16 16 O -0.30 -11.39 10.06 -89.89 -0.90 -12.30 16 17 C 0.08 2.52 5.13 71.98 0.37 2.89 16 18 C 0.06 1.38 5.41 86.30 0.47 1.85 16 19 N -0.53 -12.98 5.34 -883.01 -4.72 -17.70 16 20 C 0.03 0.74 5.08 86.65 0.44 1.18 16 21 C -0.12 -2.22 7.06 31.80 0.22 -2.00 16 22 C -0.12 -1.87 6.93 31.47 0.22 -1.65 16 23 C 0.03 0.57 6.70 86.45 0.58 1.15 16 24 N -0.63 -29.91 7.91 -306.32 -2.42 -32.34 16 25 H 0.03 1.88 7.31 -2.39 -0.02 1.87 16 26 H 0.04 2.14 7.27 -2.39 -0.02 2.12 16 27 H 0.04 2.23 7.36 -2.39 -0.02 2.21 16 28 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.12 5.41 6.08 -2.91 -0.02 5.39 16 30 H 0.16 4.45 8.06 -2.91 -0.02 4.42 16 31 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 32 H 0.05 1.79 6.48 -2.39 -0.02 1.77 16 33 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 34 H 0.07 1.50 7.81 -2.38 -0.02 1.48 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 1.68 7.56 -2.38 -0.02 1.66 16 37 H 0.05 1.06 8.01 -2.39 -0.02 1.04 16 38 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 0.84 7.57 -2.39 -0.02 0.82 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -62.45 344.41 0.40 -62.05 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.99 Total: 25.70 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.89 Total: 6.68 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -8.60 Total: -124.70 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.90 Total: -12.30 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -62.45 0.40 -62.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165091967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.498 kcal (2) G-P(sol) polarization free energy of solvation -62.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds