Wall clock time and date at job start Tue Mar 31 2020 07:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36917 * 120.00100 * 2 1 4 4 H 1.08005 * 120.00334 * 205.74973 * 3 2 1 5 5 C 1.38820 * 119.99899 * 25.74982 * 3 2 1 6 6 N 1.31563 * 119.99803 * 13.09040 * 5 3 2 7 7 Si 1.86803 * 119.99831 * 193.09230 * 5 3 2 8 8 H 1.48500 * 109.46984 * 89.99993 * 7 5 3 9 9 H 1.48499 * 109.46912 * 209.99966 * 7 5 3 10 10 H 1.48501 * 109.46868 * 329.99687 * 7 5 3 11 11 C 1.38861 * 120.00022 * 180.02562 * 2 1 3 12 12 C 1.38999 * 119.68627 * 185.00120 * 11 2 1 13 13 C 1.38924 * 119.02375 * 180.27453 * 12 11 2 14 14 O 1.35745 * 120.80469 * 179.69986 * 13 12 11 15 15 C 1.42897 * 117.00065 * 185.48423 * 14 13 12 16 16 C 1.53117 * 109.52417 * 275.12053 * 15 14 13 17 17 C 1.53048 * 109.27658 * 182.50658 * 16 15 14 18 18 N 1.46844 * 109.57805 * 59.08256 * 17 16 15 19 19 C 1.46894 * 110.99933 * 174.19522 * 18 17 16 20 20 C 1.46851 * 111.19619 * 298.29347 * 18 17 16 21 21 C 1.53032 * 109.52644 * 61.73966 * 20 18 17 22 22 C 1.39481 * 118.38912 * 359.43499 * 13 12 11 23 23 C 1.37901 * 119.27023 * 0.56164 * 22 13 12 24 24 N 1.31975 * 120.92547 * 359.70625 * 23 22 13 25 25 H 1.09000 * 109.47023 * 268.99016 * 1 2 3 26 26 H 1.09005 * 109.46898 * 28.99060 * 1 2 3 27 27 H 1.08999 * 109.47212 * 148.98901 * 1 2 3 28 28 H 0.97001 * 119.99773 * 179.97438 * 6 5 3 29 29 H 1.08002 * 120.48501 * 359.97438 * 12 11 2 30 30 H 1.09007 * 109.52399 * 35.24822 * 15 14 13 31 31 H 1.09003 * 109.50199 * 302.38123 * 16 15 14 32 32 H 1.08994 * 109.50381 * 62.49682 * 16 15 14 33 33 H 1.08996 * 109.40705 * 299.06461 * 17 16 15 34 34 H 1.09000 * 109.45152 * 179.12824 * 17 16 15 35 35 H 1.09000 * 109.47034 * 184.20733 * 19 18 17 36 36 H 1.08997 * 109.47539 * 304.20790 * 19 18 17 37 37 H 1.09001 * 109.47275 * 64.21370 * 19 18 17 38 38 H 1.08998 * 109.45967 * 301.72281 * 20 18 17 39 39 H 1.09004 * 109.46002 * 181.75888 * 20 18 17 40 40 H 1.08997 * 109.50550 * 180.87970 * 21 20 18 41 41 H 1.09000 * 109.53506 * 60.77898 * 21 20 18 42 42 H 1.08006 * 120.36460 * 180.30802 * 22 13 12 43 43 H 1.08001 * 119.53876 * 179.72187 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.1493 1.2322 -0.4063 5 6 1.5589 2.3282 0.5223 6 7 0.4627 2.2311 1.2433 7 14 2.3205 4.0035 0.2014 8 1 1.7482 4.5772 -1.0431 9 1 2.0282 4.9070 1.3430 10 1 3.7905 3.8580 0.0491 11 6 2.1593 -1.2026 -0.0005 12 6 3.5453 -1.1973 0.1047 13 6 4.2265 -2.4081 0.0970 14 8 5.5801 -2.4448 0.1916 15 6 6.2056 -3.7222 0.0547 16 6 6.2095 -4.4378 1.4084 17 6 6.9358 -5.7778 1.2694 18 7 8.3120 -5.5465 0.8125 19 6 9.0800 -6.7987 0.8001 20 6 8.3322 -4.9035 -0.5076 21 6 7.6491 -3.5369 -0.4214 22 6 3.4853 -3.5853 -0.0047 23 6 2.1120 -3.5109 -0.1054 24 7 1.4938 -2.3449 -0.1009 25 1 -0.3633 -0.0181 1.0275 26 1 -0.3633 0.8990 -0.4981 27 1 -0.3633 -0.8808 -0.5294 28 1 0.0502 3.0294 1.6085 29 1 4.0851 -0.2654 0.1864 30 1 5.6564 -4.3208 -0.6722 31 1 6.7242 -3.8207 2.1448 32 1 5.1830 -4.6109 1.7314 33 1 6.4120 -6.4002 0.5439 34 1 6.9537 -6.2828 2.2352 35 1 10.1147 -6.5876 0.5299 36 1 9.0486 -7.2541 1.7898 37 1 8.6467 -7.4834 0.0711 38 1 7.8019 -5.5300 -1.2248 39 1 9.3646 -4.7738 -0.8326 40 1 7.6504 -3.0667 -1.4047 41 1 8.1869 -2.9045 0.2851 42 1 3.9819 -4.5444 -0.0087 43 1 1.5342 -4.4195 -0.1889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165094947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:06 Heat of formation + Delta-G solvation = 0.241275 kcal Electronic energy + Delta-G solvation = -23324.904433 eV Core-core repulsion = 19984.051686 eV Total energy + Delta-G solvation = -3340.852747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50758 -40.20317 -38.74060 -37.37519 -33.93823 -33.81706 -32.01783 -31.72853 -30.66632 -28.39815 -27.39684 -25.89338 -24.41154 -23.91411 -23.69471 -22.17838 -20.89530 -19.63387 -18.82636 -17.69319 -17.15395 -16.88810 -16.33609 -16.12188 -15.96011 -15.92035 -15.60666 -15.40881 -15.09456 -14.87556 -14.34942 -14.18413 -14.06154 -13.59694 -13.41074 -13.22248 -13.20263 -13.03105 -12.65108 -12.62308 -12.45286 -12.39547 -12.20711 -12.11144 -11.79948 -11.53971 -11.39580 -11.22667 -10.51086 -10.09326 -9.58349 -9.29919 -8.74167 -8.32078 -5.88529 0.69339 0.83242 1.40429 1.45551 1.53417 2.12357 2.26589 2.86700 2.96258 3.04226 3.37198 3.69248 3.73489 3.96235 4.01916 4.09720 4.15776 4.31954 4.36912 4.43991 4.52520 4.55767 4.64486 4.69743 4.72570 4.77675 4.84454 4.91152 4.96806 4.97387 5.06634 5.10099 5.14724 5.22531 5.26860 5.31291 5.34591 5.47279 5.68371 6.07807 6.08870 6.11579 6.59078 6.61802 7.22467 7.32676 7.87965 8.66068 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024735 B = 0.003507 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.711347 B = 7981.861445 C = 8792.693029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.149 3.851 2 N -0.448 5.448 3 C -0.334 4.334 4 H 0.091 0.909 5 C -0.010 4.010 6 N -0.900 5.900 7 Si 0.997 3.003 8 H -0.268 1.268 9 H -0.277 1.277 10 H -0.264 1.264 11 C 0.380 3.620 12 C -0.316 4.316 13 C 0.208 3.792 14 O -0.325 6.325 15 C 0.081 3.919 16 C -0.138 4.138 17 C 0.065 3.935 18 N -0.562 5.562 19 C 0.026 3.974 20 C 0.066 3.934 21 C -0.110 4.110 22 C -0.357 4.357 23 C 0.180 3.820 24 N -0.605 5.605 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.273 0.727 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.152 0.848 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.719 -16.206 -2.676 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.139 5.139 3 C -0.462 4.462 4 H 0.109 0.891 5 C -0.213 4.213 6 N -0.536 5.536 7 Si 0.820 3.180 8 H -0.193 1.193 9 H -0.203 1.203 10 H -0.188 1.188 11 C 0.141 3.859 12 C -0.344 4.344 13 C 0.155 3.845 14 O -0.237 6.237 15 C 0.025 3.975 16 C -0.176 4.176 17 C -0.063 4.063 18 N -0.287 5.287 19 C -0.122 4.122 20 C -0.062 4.062 21 C -0.148 4.148 22 C -0.383 4.383 23 C 0.018 3.982 24 N -0.329 5.329 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.169 0.831 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 12.908 -15.223 -2.261 20.087 hybrid contribution 0.382 0.491 -0.314 0.697 sum 13.291 -14.732 -2.574 20.008 Atomic orbital electron populations 1.21043 0.79725 0.99064 0.99657 1.42576 1.05196 1.01563 1.64569 1.19809 1.02063 0.85198 1.39142 0.89111 1.26294 0.97200 1.03578 0.94194 1.70193 1.20941 1.31084 1.31368 0.84863 0.78763 0.76301 0.78078 1.19287 1.20264 1.18824 1.18400 0.88065 0.86505 0.92894 1.20296 0.93360 0.97086 1.23683 1.18888 0.82296 0.93507 0.89826 1.86037 1.16867 1.34333 1.86491 1.22713 0.94240 0.82486 0.98039 1.22114 1.01266 0.97259 0.96940 1.22002 0.87785 0.95073 1.01397 1.61928 1.13723 1.26029 1.27050 1.22392 0.98432 0.89268 1.02098 1.22035 1.01593 0.93163 0.89427 1.21649 0.92181 0.98708 1.02292 1.21675 0.95839 0.97339 1.23481 1.22598 0.91818 0.94583 0.89200 1.67216 1.40882 0.97833 1.26983 0.95148 0.93294 0.92756 0.91743 0.87358 0.90384 0.91636 0.90820 0.93705 0.89156 0.90424 0.90673 0.94957 0.93770 0.88413 0.90203 0.91070 0.83089 0.80187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.68 8.75 127.77 1.12 8.80 16 2 N -0.45 -24.65 3.11 -541.34 -1.68 -26.33 16 3 C -0.33 -18.61 8.83 84.04 0.74 -17.86 16 4 H 0.09 5.00 6.42 -2.91 -0.02 4.98 16 5 C -0.01 -0.56 5.04 84.87 0.43 -0.13 16 6 N -0.90 -49.90 10.93 21.65 0.24 -49.66 16 7 Si 1.00 42.04 29.57 68.60 2.03 44.07 16 8 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 9 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 C 0.38 19.53 7.34 133.02 0.98 20.51 16 12 C -0.32 -15.47 9.23 22.62 0.21 -15.26 16 13 C 0.21 8.42 6.64 22.73 0.15 8.58 16 14 O -0.32 -11.76 9.82 -90.69 -0.89 -12.65 16 15 C 0.08 2.09 2.18 30.67 0.07 2.16 16 16 C -0.14 -3.19 5.39 30.65 0.17 -3.03 16 17 C 0.07 1.13 5.46 86.33 0.47 1.60 16 18 N -0.56 -9.53 4.91 -922.60 -4.53 -14.06 16 19 C 0.03 0.30 9.59 127.69 1.22 1.53 16 20 C 0.07 1.06 5.46 86.32 0.47 1.53 16 21 C -0.11 -2.37 5.75 30.65 0.18 -2.19 16 22 C -0.36 -12.26 8.34 22.49 0.19 -12.08 16 23 C 0.18 6.55 11.17 84.59 0.94 7.49 16 24 N -0.61 -27.88 9.09 -193.45 -1.76 -29.64 16 25 H 0.03 1.64 7.64 -2.39 -0.02 1.63 16 26 H 0.05 2.56 7.12 -2.38 -0.02 2.54 16 27 H 0.05 2.58 7.33 -2.39 -0.02 2.57 16 28 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.11 5.62 6.32 -2.91 -0.02 5.61 16 30 H 0.08 1.89 6.40 -2.38 -0.02 1.88 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.78 6.89 -2.39 -0.02 1.77 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 37 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 1.28 8.12 -2.39 -0.02 1.26 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.15 4.02 5.55 -2.91 -0.02 4.01 16 43 H 0.18 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -65.38 339.24 1.73 -63.66 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 1.00 Total: 22.98 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 7.33 Total: 1.64 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -7.74 Total: -119.69 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.89 Total: -12.65 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -65.38 1.73 -63.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165094947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.897 kcal (2) G-P(sol) polarization free energy of solvation -65.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds