Wall clock time and date at job start Tue Mar 31 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42893 * 109.47299 * 2 1 4 4 C 1.35453 * 117.00288 * 180.02562 * 3 2 1 5 5 N 1.32322 * 119.15571 * 359.97438 * 4 3 2 6 6 C 1.32507 * 120.95323 * 180.02562 * 5 4 3 7 7 C 1.38114 * 119.26655 * 0.02562 * 6 5 4 8 8 C 1.39630 * 118.45660 * 359.97438 * 7 6 5 9 9 N 1.38528 * 120.49867 * 180.02562 * 8 7 6 10 10 C 1.46497 * 120.00227 * 190.70527 * 9 8 7 11 11 C 1.50697 * 109.47325 * 270.00327 * 10 9 8 12 12 H 1.08007 * 119.99883 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00482 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99847 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00307 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46954 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47368 * 119.99825 * 15 13 11 18 18 H 1.48507 * 109.47210 * 239.99802 * 15 13 11 19 19 C 1.46501 * 119.99860 * 10.70515 * 9 8 7 20 20 C 1.54271 * 110.03171 * 242.63168 * 19 9 8 21 21 C 1.54891 * 104.19497 * 217.10972 * 20 19 9 22 22 C 1.54889 * 102.75002 * 37.93714 * 21 20 19 23 23 C 1.53879 * 110.03221 * 125.46637 * 19 9 8 24 24 N 1.32271 * 119.15892 * 180.27727 * 4 3 2 25 25 H 1.09001 * 109.46672 * 299.99381 * 1 2 3 26 26 H 1.08996 * 109.47228 * 59.99304 * 1 2 3 27 27 H 1.08999 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47014 * 240.00223 * 2 1 3 29 29 H 1.09006 * 109.47339 * 120.00668 * 2 1 3 30 30 H 1.08002 * 120.36910 * 180.02562 * 6 5 4 31 31 H 1.08008 * 120.77392 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47160 * 30.00096 * 10 9 8 33 33 H 1.08998 * 109.47647 * 149.99994 * 10 9 8 34 34 H 0.96999 * 120.00355 * 179.97438 * 14 13 11 35 35 H 1.08997 * 110.06095 * 4.05004 * 19 9 8 36 36 H 1.08998 * 110.48328 * 335.77931 * 20 19 9 37 37 H 1.08994 * 110.48899 * 98.42618 * 20 19 9 38 38 H 1.09003 * 110.75560 * 279.62685 * 21 20 19 39 39 H 1.08997 * 110.91879 * 156.33334 * 21 20 19 40 40 H 1.09000 * 110.48474 * 203.37424 * 22 21 20 41 41 H 1.09004 * 110.47982 * 80.74225 * 22 21 20 42 42 H 1.08994 * 110.03188 * 238.56741 * 23 19 9 43 43 H 1.09007 * 110.02895 * 359.95013 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3492 1.5247 -0.0005 5 7 4.1397 0.4636 -0.0005 6 6 5.4582 0.5959 -0.0005 7 6 6.0096 1.8622 0.0000 8 6 5.1498 2.9623 -0.0001 9 7 5.6574 4.2513 -0.0001 10 6 4.7658 5.3896 0.2355 11 6 4.2145 5.8766 -1.0797 12 1 4.5000 5.3873 -1.9993 13 6 3.3456 6.9467 -1.1093 14 7 2.9975 7.5422 0.0105 15 14 2.6627 7.5507 -2.7397 16 1 3.2056 6.7178 -3.8427 17 1 1.1814 7.4482 -2.7244 18 1 3.0588 8.9667 -2.9482 19 6 7.0857 4.4761 -0.2358 20 6 7.7302 5.1265 1.0058 21 6 8.7647 6.1196 0.4205 22 6 8.0339 6.6801 -0.8248 23 6 7.2788 5.4640 -1.3997 24 7 3.8368 2.7543 0.0050 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5140 0.8900 30 1 6.0945 -0.2767 -0.0009 31 1 7.0811 1.9983 -0.0004 32 1 3.9442 5.0801 0.8815 33 1 5.3227 6.1940 0.7161 34 1 2.3865 8.2952 -0.0103 35 1 7.5805 3.5316 -0.4618 36 1 6.9798 5.6581 1.5908 37 1 8.2277 4.3730 1.6163 38 1 9.6781 5.6000 0.1310 39 1 8.9843 6.9166 1.1310 40 1 8.7531 7.0605 -1.5501 41 1 7.3325 7.4627 -0.5353 42 1 7.8673 4.9989 -2.1904 43 1 6.3098 5.7755 -1.7897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166533859.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:05 Heat of formation + Delta-G solvation = 18.556331 kcal Electronic energy + Delta-G solvation = -23948.917543 eV Core-core repulsion = 20608.858997 eV Total energy + Delta-G solvation = -3340.058547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53319 -38.73261 -37.64235 -34.86243 -32.78994 -32.46691 -31.25523 -29.92409 -28.32978 -27.88437 -26.38528 -23.83777 -23.59154 -22.37654 -21.45159 -20.27159 -19.32965 -17.93667 -17.06087 -16.50335 -16.42456 -16.08944 -15.10273 -14.78819 -14.71286 -14.18447 -14.10322 -13.85337 -13.33576 -13.00191 -12.70123 -12.68284 -12.54214 -12.13675 -11.64729 -11.42009 -11.32783 -11.24997 -10.90112 -10.73838 -10.71355 -10.66651 -10.59137 -10.44297 -10.39707 -10.19511 -10.14155 -9.65833 -9.34449 -8.63124 -8.41132 -8.37264 -7.10650 -6.00437 -4.03503 1.73822 2.01291 2.92550 3.30941 3.39408 3.42736 3.84825 4.45656 4.51334 4.65266 4.94955 5.04228 5.13327 5.14382 5.19429 5.29354 5.33092 5.40395 5.52111 5.62444 5.75471 5.84456 5.87699 5.92625 5.94287 5.97315 6.04482 6.11807 6.16799 6.22098 6.25343 6.37124 6.51231 6.61530 6.77293 6.91529 7.14014 7.34344 7.51955 7.71467 7.88746 8.11104 8.24170 8.27428 8.93559 9.02171 9.58704 11.06307 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.006402 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.558038 B = 4372.686970 C = 6300.336401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.076 3.924 3 O -0.292 6.292 4 C 0.533 3.467 5 N -0.629 5.629 6 C 0.197 3.803 7 C -0.345 4.345 8 C 0.479 3.521 9 N -0.564 5.564 10 C 0.252 3.748 11 C -0.511 4.511 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.285 1.285 19 C 0.150 3.850 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.152 4.152 24 N -0.555 5.555 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.157 0.843 31 H 0.136 0.864 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.229 -10.725 0.826 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.001 4.001 3 O -0.194 6.194 4 C 0.228 3.772 5 N -0.365 5.365 6 C 0.037 3.963 7 C -0.375 4.375 8 C 0.233 3.767 9 N -0.271 5.271 10 C 0.133 3.867 11 C -0.550 4.550 12 H 0.076 0.924 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.211 1.211 19 C 0.046 3.954 20 C -0.174 4.174 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.190 4.190 24 N -0.291 5.291 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.175 0.825 31 H 0.154 0.846 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.936 -10.312 0.908 11.933 hybrid contribution 0.475 0.339 -0.917 1.087 sum 6.412 -9.973 -0.009 11.856 Atomic orbital electron populations 1.21819 0.93164 1.02443 1.03607 1.22555 0.94395 0.80766 1.02336 1.86076 1.15757 1.30223 1.87301 1.20243 0.84857 0.84767 0.87333 1.67981 1.06383 1.33481 1.28680 1.22292 0.89599 0.96063 0.88349 1.21958 1.01245 0.93654 1.20599 1.18204 0.86745 0.86630 0.85120 1.47360 1.07618 1.03195 1.68965 1.19323 0.88347 0.81734 0.97285 1.21359 1.26770 1.13966 0.92899 0.92369 1.24880 0.96041 0.96632 0.96315 1.69928 1.34755 1.22679 1.25861 0.86539 0.79105 0.78286 0.84079 1.19904 1.20941 1.21110 1.21713 0.80144 0.98608 0.94979 1.22790 0.98479 0.98568 0.97602 1.22431 0.97454 0.98293 0.97714 1.22275 0.98519 0.98379 0.96417 1.22814 1.04032 0.95373 0.96830 1.67165 1.13729 1.21698 1.26483 0.91573 0.91560 0.90473 0.91735 0.91741 0.82537 0.84621 0.93822 0.94686 0.92883 0.90094 0.90223 0.92016 0.92072 0.91872 0.92489 0.90843 0.92710 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 37.16 0.38 -1.36 16 2 C 0.08 1.09 6.01 37.16 0.22 1.31 16 3 O -0.29 -5.78 10.19 -18.05 -0.18 -5.97 16 4 C 0.53 11.20 8.49 -91.29 -0.77 10.42 16 5 N -0.63 -11.35 9.22 -14.82 -0.14 -11.49 16 6 C 0.20 3.05 11.28 -17.31 -0.20 2.86 16 7 C -0.34 -5.75 9.31 -39.11 -0.36 -6.12 16 8 C 0.48 10.05 7.34 -154.83 -1.14 8.92 16 9 N -0.56 -11.80 2.53 -166.18 -0.42 -12.22 16 10 C 0.25 6.33 4.53 -5.20 -0.02 6.30 16 11 C -0.51 -13.88 7.53 -34.44 -0.26 -14.13 16 12 H 0.06 1.62 6.89 -52.48 -0.36 1.26 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 15 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C 0.15 2.51 3.18 -66.81 -0.21 2.30 16 20 C -0.14 -2.03 6.34 -25.07 -0.16 -2.19 16 21 C -0.12 -1.59 6.91 -24.74 -0.17 -1.76 16 22 C -0.12 -1.79 6.83 -25.08 -0.17 -1.97 16 23 C -0.15 -2.60 6.26 -25.61 -0.16 -2.76 16 24 N -0.56 -13.08 9.43 -13.97 -0.13 -13.21 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 29 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 30 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.14 1.86 6.07 -52.48 -0.32 1.54 16 32 H 0.04 1.25 7.58 -51.93 -0.39 0.86 16 33 H 0.04 0.90 6.65 -51.93 -0.35 0.56 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.08 1.19 5.58 -51.93 -0.29 0.90 16 36 H 0.08 1.38 6.51 -51.93 -0.34 1.04 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.12 2.42 4.58 -51.93 -0.24 2.18 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -31.40 344.95 -9.57 -40.97 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.49 Total: 1.71 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -3.12 Total: 3.49 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.05 Total: -62.18 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.18 Total: -5.97 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.40 -9.57 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533859.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.524 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds