Wall clock time and date at job start Tue Mar 31 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42893 * 109.47299 * 2 1 4 4 C 1.35453 * 117.00288 * 180.02562 * 3 2 1 5 5 N 1.32322 * 119.15571 * 359.97438 * 4 3 2 6 6 C 1.32507 * 120.95323 * 180.02562 * 5 4 3 7 7 C 1.38114 * 119.26655 * 0.02562 * 6 5 4 8 8 C 1.39630 * 118.45660 * 359.97438 * 7 6 5 9 9 N 1.38528 * 120.49867 * 180.02562 * 8 7 6 10 10 C 1.46497 * 120.00227 * 190.70527 * 9 8 7 11 11 C 1.50697 * 109.47325 * 270.00327 * 10 9 8 12 12 H 1.08007 * 119.99883 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00482 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99847 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00307 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46954 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47368 * 119.99825 * 15 13 11 18 18 H 1.48507 * 109.47210 * 239.99802 * 15 13 11 19 19 C 1.46501 * 119.99860 * 10.70515 * 9 8 7 20 20 C 1.54271 * 110.03171 * 242.63168 * 19 9 8 21 21 C 1.54891 * 104.19497 * 217.10972 * 20 19 9 22 22 C 1.54889 * 102.75002 * 37.93714 * 21 20 19 23 23 C 1.53879 * 110.03221 * 125.46637 * 19 9 8 24 24 N 1.32271 * 119.15892 * 180.27727 * 4 3 2 25 25 H 1.09001 * 109.46672 * 299.99381 * 1 2 3 26 26 H 1.08996 * 109.47228 * 59.99304 * 1 2 3 27 27 H 1.08999 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47014 * 240.00223 * 2 1 3 29 29 H 1.09006 * 109.47339 * 120.00668 * 2 1 3 30 30 H 1.08002 * 120.36910 * 180.02562 * 6 5 4 31 31 H 1.08008 * 120.77392 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47160 * 30.00096 * 10 9 8 33 33 H 1.08998 * 109.47647 * 149.99994 * 10 9 8 34 34 H 0.96999 * 120.00355 * 179.97438 * 14 13 11 35 35 H 1.08997 * 110.06095 * 4.05004 * 19 9 8 36 36 H 1.08998 * 110.48328 * 335.77931 * 20 19 9 37 37 H 1.08994 * 110.48899 * 98.42618 * 20 19 9 38 38 H 1.09003 * 110.75560 * 279.62685 * 21 20 19 39 39 H 1.08997 * 110.91879 * 156.33334 * 21 20 19 40 40 H 1.09000 * 110.48474 * 203.37424 * 22 21 20 41 41 H 1.09004 * 110.47982 * 80.74225 * 22 21 20 42 42 H 1.08994 * 110.03188 * 238.56741 * 23 19 9 43 43 H 1.09007 * 110.02895 * 359.95013 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3492 1.5247 -0.0005 5 7 4.1397 0.4636 -0.0005 6 6 5.4582 0.5959 -0.0005 7 6 6.0096 1.8622 0.0000 8 6 5.1498 2.9623 -0.0001 9 7 5.6574 4.2513 -0.0001 10 6 4.7658 5.3896 0.2355 11 6 4.2145 5.8766 -1.0797 12 1 4.5000 5.3873 -1.9993 13 6 3.3456 6.9467 -1.1093 14 7 2.9975 7.5422 0.0105 15 14 2.6627 7.5507 -2.7397 16 1 3.2056 6.7178 -3.8427 17 1 1.1814 7.4482 -2.7244 18 1 3.0588 8.9667 -2.9482 19 6 7.0857 4.4761 -0.2358 20 6 7.7302 5.1265 1.0058 21 6 8.7647 6.1196 0.4205 22 6 8.0339 6.6801 -0.8248 23 6 7.2788 5.4640 -1.3997 24 7 3.8368 2.7543 0.0050 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5140 0.8900 30 1 6.0945 -0.2767 -0.0009 31 1 7.0811 1.9983 -0.0004 32 1 3.9442 5.0801 0.8815 33 1 5.3227 6.1940 0.7161 34 1 2.3865 8.2952 -0.0103 35 1 7.5805 3.5316 -0.4618 36 1 6.9798 5.6581 1.5908 37 1 8.2277 4.3730 1.6163 38 1 9.6781 5.6000 0.1310 39 1 8.9843 6.9166 1.1310 40 1 8.7531 7.0605 -1.5501 41 1 7.3325 7.4627 -0.5353 42 1 7.8673 4.9989 -2.1904 43 1 6.3098 5.7755 -1.7897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166533859.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:05 Heat of formation + Delta-G solvation = -1.992373 kcal Electronic energy + Delta-G solvation = -23949.808602 eV Core-core repulsion = 20608.858997 eV Total energy + Delta-G solvation = -3340.949605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98288 -40.12968 -38.99124 -36.33334 -34.80187 -33.90505 -32.50926 -31.39989 -29.72442 -29.35547 -27.96028 -25.54668 -24.89191 -23.90174 -22.85629 -21.46720 -20.70308 -19.38418 -18.69594 -18.42009 -17.82682 -17.44662 -16.68442 -16.37001 -15.96462 -15.70855 -15.53074 -15.14469 -14.69256 -14.58210 -14.25920 -14.02457 -13.63926 -13.45489 -13.25407 -13.08537 -12.91242 -12.62612 -12.52230 -12.47288 -12.23122 -11.94969 -11.87622 -11.82134 -11.77528 -11.69705 -11.46147 -11.32933 -11.07132 -10.56814 -10.08830 -9.90265 -8.71664 -8.11725 -6.25390 0.33615 0.57212 1.32682 1.35760 1.45733 1.59062 2.30003 2.44993 3.05160 3.13151 3.37919 3.73405 3.82315 3.88779 4.06896 4.09164 4.09670 4.19868 4.39005 4.45445 4.59791 4.62329 4.68389 4.72007 4.77733 4.85300 4.89006 4.93784 4.96633 5.08772 5.16321 5.17901 5.21737 5.29593 5.37792 5.38908 5.56718 5.66312 5.69681 5.87680 6.12785 6.25983 6.52337 6.70861 6.82655 7.39194 7.52712 8.90385 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.006402 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.558038 B = 4372.686970 C = 6300.336401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 O -0.323 6.323 4 C 0.516 3.484 5 N -0.620 5.620 6 C 0.203 3.797 7 C -0.332 4.332 8 C 0.451 3.549 9 N -0.575 5.575 10 C 0.280 3.720 11 C -0.507 4.507 12 H 0.047 0.953 13 C 0.010 3.990 14 N -0.928 5.928 15 Si 0.952 3.048 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.145 3.855 20 C -0.134 4.134 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.154 4.154 24 N -0.616 5.616 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.215 0.785 31 H 0.174 0.826 32 H -0.004 1.004 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.114 0.886 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.789 -13.086 -0.003 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.005 4.005 3 O -0.225 6.225 4 C 0.211 3.789 5 N -0.357 5.357 6 C 0.044 3.956 7 C -0.360 4.360 8 C 0.207 3.793 9 N -0.283 5.283 10 C 0.158 3.842 11 C -0.545 4.545 12 H 0.065 0.935 13 C -0.188 4.188 14 N -0.569 5.569 15 Si 0.778 3.222 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.197 1.197 19 C 0.042 3.958 20 C -0.172 4.172 21 C -0.146 4.146 22 C -0.156 4.156 23 C -0.192 4.192 24 N -0.353 5.353 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.132 0.868 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.231 0.769 31 H 0.191 0.809 32 H 0.014 0.986 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.520 -12.705 0.071 15.298 hybrid contribution -0.323 0.940 -0.644 1.184 sum 8.197 -11.766 -0.573 14.351 Atomic orbital electron populations 1.21866 0.91052 1.04569 1.02931 1.22903 0.96016 0.78706 1.02886 1.86048 1.15789 1.33411 1.87280 1.20426 0.85586 0.84805 0.88037 1.68123 1.07547 1.31914 1.28081 1.23261 0.89016 0.97530 0.85841 1.22284 1.02432 0.92410 1.18876 1.18717 0.86877 0.87578 0.86110 1.47240 1.08628 1.02269 1.70178 1.18588 0.87563 0.82759 0.95251 1.21519 1.26284 1.13498 0.93245 0.93468 1.25666 0.96588 0.97088 0.99464 1.70042 1.35695 1.23370 1.27771 0.85592 0.78009 0.78324 0.80251 1.19603 1.21147 1.19687 1.22066 0.78003 1.00143 0.95582 1.22775 0.98161 0.99379 0.96912 1.22412 0.97698 0.98112 0.96376 1.22243 0.98322 0.96838 0.98158 1.22767 1.02184 0.96491 0.97798 1.66996 1.15972 1.24012 1.28336 0.92156 0.92305 0.86835 0.91159 0.91002 0.76894 0.80895 0.98553 0.96186 0.92804 0.86859 0.93834 0.89180 0.88641 0.91172 0.90120 0.94525 0.90121 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 10.28 71.98 0.74 -2.49 16 2 C 0.07 1.98 6.01 71.98 0.43 2.41 16 3 O -0.32 -13.21 10.19 -87.51 -0.89 -14.10 16 4 C 0.52 22.05 8.49 180.58 1.53 23.58 16 5 N -0.62 -21.35 9.22 -313.75 -2.89 -24.24 16 6 C 0.20 5.54 11.28 84.56 0.95 6.49 16 7 C -0.33 -10.09 9.31 22.58 0.21 -9.88 16 8 C 0.45 19.04 7.34 133.18 0.98 20.02 16 9 N -0.58 -24.65 2.53 -679.68 -1.72 -26.37 16 10 C 0.28 15.02 4.53 85.63 0.39 15.41 16 11 C -0.51 -29.04 7.53 25.60 0.19 -28.85 16 12 H 0.05 2.76 6.89 -2.91 -0.02 2.74 16 13 C 0.01 0.60 5.46 84.65 0.46 1.06 16 14 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 15 Si 0.95 46.33 29.54 68.60 2.03 48.35 16 16 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 C 0.14 4.65 3.18 45.72 0.15 4.80 16 20 C -0.13 -3.81 6.34 31.67 0.20 -3.61 16 21 C -0.11 -2.56 6.91 31.89 0.22 -2.34 16 22 C -0.12 -3.48 6.83 31.67 0.22 -3.26 16 23 C -0.15 -5.14 6.26 31.32 0.20 -4.95 16 24 N -0.62 -30.18 9.43 -311.08 -2.93 -33.11 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 29 H 0.07 1.89 8.09 -2.38 -0.02 1.87 16 30 H 0.21 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.17 3.84 6.07 -2.91 -0.02 3.83 16 32 H 0.00 -0.23 7.58 -2.39 -0.02 -0.24 16 33 H 0.02 1.12 6.65 -2.39 -0.02 1.11 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.11 2.87 5.58 -2.39 -0.01 2.85 16 36 H 0.04 1.55 6.51 -2.39 -0.02 1.54 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.07 2.98 4.58 -2.38 -0.01 2.97 16 Total: -1.00 -75.29 344.95 1.75 -73.54 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 1.00 Total: 14.06 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 6.87 Total: 18.39 kcal Atomic # 7 Polarization: -132.98 SS G_CDS: -7.26 Total: -140.24 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.89 Total: -14.10 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -75.29 1.75 -73.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533859.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.548 kcal (2) G-P(sol) polarization free energy of solvation -75.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds