Wall clock time and date at job start Tue Mar 31 2020 07:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46844 * 2 1 4 4 C 1.35678 * 116.99512 * 175.14212 * 3 2 1 5 5 C 1.38952 * 120.01809 * 185.37640 * 4 3 2 6 6 N 1.32082 * 120.10607 * 180.02562 * 5 4 3 7 7 C 1.32037 * 120.14927 * 359.68779 * 6 5 4 8 8 C 1.39162 * 120.03391 * 0.56967 * 7 6 5 9 9 N 1.38995 * 120.04792 * 179.73102 * 8 7 6 10 10 C 1.46503 * 120.00095 * 84.87489 * 9 8 7 11 11 C 1.50700 * 109.47419 * 89.99559 * 10 9 8 12 12 H 1.08002 * 119.99441 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99934 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00165 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99759 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46836 * 90.00229 * 15 13 11 17 17 H 1.48501 * 109.46851 * 210.00159 * 15 13 11 18 18 H 1.48500 * 109.46883 * 329.99873 * 15 13 11 19 19 C 1.46502 * 120.00214 * 264.86837 * 9 8 7 20 20 C 1.54266 * 110.03044 * 61.01660 * 19 9 8 21 21 C 1.54885 * 104.19767 * 217.10928 * 20 19 9 22 22 C 1.54887 * 102.74946 * 37.94142 * 21 20 19 23 23 C 1.53876 * 110.03303 * 303.85600 * 19 9 8 24 24 N 1.32585 * 120.02212 * 5.36362 * 4 3 2 25 25 H 1.08997 * 109.46949 * 60.00285 * 1 2 3 26 26 H 1.09003 * 109.47163 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47112 * 299.99947 * 1 2 3 28 28 H 1.09006 * 109.47028 * 240.00043 * 2 1 3 29 29 H 1.08993 * 109.47121 * 120.00195 * 2 1 3 30 30 H 1.08008 * 119.94308 * 359.97438 * 5 4 3 31 31 H 1.07993 * 119.97985 * 180.27925 * 7 6 5 32 32 H 1.09000 * 109.46752 * 329.99784 * 10 9 8 33 33 H 1.08992 * 109.47027 * 210.00082 * 10 9 8 34 34 H 0.97000 * 119.99668 * 179.97438 * 14 13 11 35 35 H 1.08998 * 110.01831 * 182.45827 * 19 9 8 36 36 H 1.08998 * 110.48723 * 335.78971 * 20 19 9 37 37 H 1.09003 * 110.48477 * 98.42665 * 20 19 9 38 38 H 1.09006 * 110.75199 * 279.62566 * 21 20 19 39 39 H 1.09000 * 110.91624 * 156.33790 * 21 20 19 40 40 H 1.09005 * 110.48579 * 203.38310 * 22 21 20 41 41 H 1.08996 * 110.59929 * 80.79760 * 22 21 20 42 42 H 1.09001 * 110.03185 * 238.56954 * 23 19 9 43 43 H 1.09003 * 110.03275 * 359.94797 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3473 1.5265 0.1024 5 6 3.8703 2.8083 0.2211 6 7 5.1755 2.9848 0.3204 7 6 5.9879 1.9439 0.3134 8 6 5.4710 0.6578 0.1894 9 7 6.3263 -0.4378 0.1764 10 6 6.7761 -1.0309 1.4381 11 6 5.8104 -2.1085 1.8592 12 1 4.9480 -2.3296 1.2477 13 6 6.0283 -2.8126 3.0243 14 7 7.0787 -2.5436 3.7685 15 14 4.8308 -4.1479 3.5465 16 1 5.2592 -5.4489 2.9730 17 1 4.8107 -4.2427 5.0284 18 1 3.4706 -3.8133 3.0534 19 6 6.7779 -0.9994 -1.0991 20 6 7.5661 0.0618 -1.8943 21 6 7.1620 -0.1901 -3.3681 22 6 5.6587 -0.5454 -3.2544 23 6 5.5651 -1.3855 -1.9640 24 7 4.1595 0.4786 0.0894 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.2084 3.6618 0.2314 31 1 7.0543 2.0911 0.3993 32 1 6.8181 -0.2599 2.2074 33 1 7.7672 -1.4638 1.3031 34 1 7.2318 -3.0388 4.5884 35 1 7.4032 -1.8743 -0.9210 36 1 7.2740 1.0652 -1.5848 37 1 8.6387 -0.0818 -1.7628 38 1 7.7256 -1.0243 -3.7860 39 1 7.3023 0.7084 -3.9691 40 1 5.3392 -1.1323 -4.1156 41 1 5.0566 0.3588 -3.1655 42 1 5.6023 -2.4476 -2.2063 43 1 4.6406 -1.1558 -1.4343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:50 Heat of formation + Delta-G solvation = 14.929704 kcal Electronic energy + Delta-G solvation = -24389.890633 eV Core-core repulsion = 21049.674824 eV Total energy + Delta-G solvation = -3340.215809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85494 -38.58196 -37.75005 -34.83638 -33.27621 -32.44220 -31.55501 -29.41696 -28.32559 -27.91243 -26.07423 -24.31797 -23.45939 -22.33447 -21.57347 -20.35178 -19.61742 -17.86675 -17.13713 -16.44939 -16.33187 -16.20539 -15.66020 -15.50496 -14.70613 -14.15858 -14.07561 -13.64697 -13.48419 -13.01171 -12.70912 -12.59890 -12.45680 -12.44576 -11.72385 -11.58942 -11.37717 -11.11676 -11.04796 -10.87997 -10.83817 -10.82458 -10.72609 -10.53583 -10.37312 -10.25522 -10.15109 -9.89809 -9.57413 -8.87481 -8.44245 -8.18950 -7.07903 -6.00905 -4.07495 1.29917 1.60845 3.16034 3.28031 3.34826 3.38511 3.84768 4.12931 4.42820 4.68738 4.84115 4.97528 4.99042 5.00685 5.10309 5.14768 5.25423 5.29267 5.44899 5.62550 5.73621 5.76699 5.85401 5.87731 5.89799 5.91545 5.95033 5.96600 6.05226 6.14354 6.16223 6.36427 6.42717 6.56853 6.65734 6.81638 7.11498 7.34902 7.36523 7.68460 7.90165 8.20613 8.30848 8.35616 8.55727 9.03670 9.58740 11.03368 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.007268 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.734863 B = 3851.656128 C = 5057.782135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.064 3.936 3 O -0.309 6.309 4 C 0.283 3.717 5 C 0.005 3.995 6 N -0.404 5.404 7 C -0.003 4.003 8 C 0.417 3.583 9 N -0.651 5.651 10 C 0.275 3.725 11 C -0.524 4.524 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.899 5.899 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.179 3.821 20 C -0.143 4.143 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.147 4.147 24 N -0.501 5.501 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.020 0.980 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.334 6.210 -11.352 13.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.215 6.215 4 C 0.100 3.900 5 C -0.157 4.157 6 N -0.118 5.118 7 C -0.166 4.166 8 C 0.187 3.813 9 N -0.378 5.378 10 C 0.156 3.844 11 C -0.563 4.563 12 H 0.080 0.920 13 C -0.143 4.143 14 N -0.539 5.539 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.201 1.201 19 C 0.074 3.926 20 C -0.182 4.182 21 C -0.160 4.160 22 C -0.159 4.159 23 C -0.186 4.186 24 N -0.234 5.234 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.183 0.817 31 H 0.183 0.817 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.465 6.287 -11.156 13.923 hybrid contribution -0.732 -1.242 0.509 1.529 sum -6.198 5.045 -10.647 13.312 Atomic orbital electron populations 1.21801 0.93297 1.02729 1.02916 1.22611 0.94355 0.81092 1.03070 1.86191 1.17177 1.30774 1.87345 1.20949 0.84783 0.91105 0.93147 1.22574 0.92289 0.94808 1.05986 1.68313 1.02768 1.33428 1.07324 1.23930 1.00994 0.88664 1.03055 1.18828 0.85278 0.88859 0.88331 1.46467 1.51542 1.33891 1.05941 1.19052 0.94532 0.92351 0.78515 1.21771 1.09853 1.18068 1.06608 0.91983 1.24971 0.95506 0.97409 0.96451 1.69927 1.27613 1.41648 1.14685 0.86600 0.81618 0.82230 0.77578 1.20702 1.21324 1.20050 1.21232 0.93552 0.94832 0.83019 1.22949 1.00251 1.00379 0.94630 1.22434 0.96152 1.00661 0.96744 1.22298 0.96274 0.99440 0.97893 1.22793 1.00980 0.99239 0.95573 1.68257 1.06470 1.32757 1.15910 0.91920 0.90468 0.91772 0.91723 0.91094 0.81694 0.81675 0.96171 0.94949 0.92881 0.89403 0.91479 0.91517 0.91637 0.92274 0.92430 0.92855 0.92084 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.25 16 2 C 0.06 0.94 6.06 37.16 0.23 1.16 16 3 O -0.31 -4.91 10.13 -18.74 -0.19 -5.10 16 4 C 0.28 4.96 7.48 -16.96 -0.13 4.83 16 5 C 0.01 0.08 11.16 -17.18 -0.19 -0.11 16 6 N -0.40 -6.90 10.48 -12.74 -0.13 -7.03 16 7 C 0.00 -0.05 9.72 -17.12 -0.17 -0.22 16 8 C 0.42 8.16 5.07 -154.72 -0.79 7.37 16 9 N -0.65 -13.23 2.41 -166.24 -0.40 -13.63 16 10 C 0.27 6.76 5.41 -5.19 -0.03 6.73 16 11 C -0.52 -14.27 9.39 -34.44 -0.32 -14.59 16 12 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.18 3.12 3.42 -66.81 -0.23 2.89 16 20 C -0.14 -2.07 6.42 -25.07 -0.16 -2.23 16 21 C -0.12 -1.54 6.91 -24.74 -0.17 -1.71 16 22 C -0.12 -1.68 6.83 -25.08 -0.17 -1.85 16 23 C -0.15 -2.42 6.26 -25.62 -0.16 -2.58 16 24 N -0.50 -9.81 7.87 -12.31 -0.10 -9.91 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 30 H 0.17 2.11 8.06 -52.48 -0.42 1.69 16 31 H 0.17 2.67 7.91 -52.49 -0.42 2.25 16 32 H 0.02 0.54 8.05 -51.93 -0.42 0.12 16 33 H 0.03 0.83 7.95 -51.93 -0.41 0.41 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.09 1.59 7.85 -51.93 -0.41 1.19 16 36 H 0.07 1.01 5.88 -51.93 -0.31 0.71 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 1.63 6.05 -51.93 -0.31 1.31 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -29.29 352.24 -8.69 -37.97 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.89 Total: 1.14 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.00 Total: -0.04 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.11 Total: -55.86 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.19 Total: -5.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.29 -8.69 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.904 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds