Wall clock time and date at job start Tue Mar 31 2020 07:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46844 * 2 1 4 4 C 1.35678 * 116.99512 * 175.14212 * 3 2 1 5 5 C 1.38952 * 120.01809 * 185.37640 * 4 3 2 6 6 N 1.32082 * 120.10607 * 180.02562 * 5 4 3 7 7 C 1.32037 * 120.14927 * 359.68779 * 6 5 4 8 8 C 1.39162 * 120.03391 * 0.56967 * 7 6 5 9 9 N 1.38995 * 120.04792 * 179.73102 * 8 7 6 10 10 C 1.46503 * 120.00095 * 84.87489 * 9 8 7 11 11 C 1.50700 * 109.47419 * 89.99559 * 10 9 8 12 12 H 1.08002 * 119.99441 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99934 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00165 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99759 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46836 * 90.00229 * 15 13 11 17 17 H 1.48501 * 109.46851 * 210.00159 * 15 13 11 18 18 H 1.48500 * 109.46883 * 329.99873 * 15 13 11 19 19 C 1.46502 * 120.00214 * 264.86837 * 9 8 7 20 20 C 1.54266 * 110.03044 * 61.01660 * 19 9 8 21 21 C 1.54885 * 104.19767 * 217.10928 * 20 19 9 22 22 C 1.54887 * 102.74946 * 37.94142 * 21 20 19 23 23 C 1.53876 * 110.03303 * 303.85600 * 19 9 8 24 24 N 1.32585 * 120.02212 * 5.36362 * 4 3 2 25 25 H 1.08997 * 109.46949 * 60.00285 * 1 2 3 26 26 H 1.09003 * 109.47163 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47112 * 299.99947 * 1 2 3 28 28 H 1.09006 * 109.47028 * 240.00043 * 2 1 3 29 29 H 1.08993 * 109.47121 * 120.00195 * 2 1 3 30 30 H 1.08008 * 119.94308 * 359.97438 * 5 4 3 31 31 H 1.07993 * 119.97985 * 180.27925 * 7 6 5 32 32 H 1.09000 * 109.46752 * 329.99784 * 10 9 8 33 33 H 1.08992 * 109.47027 * 210.00082 * 10 9 8 34 34 H 0.97000 * 119.99668 * 179.97438 * 14 13 11 35 35 H 1.08998 * 110.01831 * 182.45827 * 19 9 8 36 36 H 1.08998 * 110.48723 * 335.78971 * 20 19 9 37 37 H 1.09003 * 110.48477 * 98.42665 * 20 19 9 38 38 H 1.09006 * 110.75199 * 279.62566 * 21 20 19 39 39 H 1.09000 * 110.91624 * 156.33790 * 21 20 19 40 40 H 1.09005 * 110.48579 * 203.38310 * 22 21 20 41 41 H 1.08996 * 110.59929 * 80.79760 * 22 21 20 42 42 H 1.09001 * 110.03185 * 238.56954 * 23 19 9 43 43 H 1.09003 * 110.03275 * 359.94797 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3473 1.5265 0.1024 5 6 3.8703 2.8083 0.2211 6 7 5.1755 2.9848 0.3204 7 6 5.9879 1.9439 0.3134 8 6 5.4710 0.6578 0.1894 9 7 6.3263 -0.4378 0.1764 10 6 6.7761 -1.0309 1.4381 11 6 5.8104 -2.1085 1.8592 12 1 4.9480 -2.3296 1.2477 13 6 6.0283 -2.8126 3.0243 14 7 7.0787 -2.5436 3.7685 15 14 4.8308 -4.1479 3.5465 16 1 5.2592 -5.4489 2.9730 17 1 4.8107 -4.2427 5.0284 18 1 3.4706 -3.8133 3.0534 19 6 6.7779 -0.9994 -1.0991 20 6 7.5661 0.0618 -1.8943 21 6 7.1620 -0.1901 -3.3681 22 6 5.6587 -0.5454 -3.2544 23 6 5.5651 -1.3855 -1.9640 24 7 4.1595 0.4786 0.0894 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.2084 3.6618 0.2314 31 1 7.0543 2.0911 0.3993 32 1 6.8181 -0.2599 2.2074 33 1 7.7672 -1.4638 1.3031 34 1 7.2318 -3.0388 4.5884 35 1 7.4032 -1.8743 -0.9210 36 1 7.2740 1.0652 -1.5848 37 1 8.6387 -0.0818 -1.7628 38 1 7.7256 -1.0243 -3.7860 39 1 7.3023 0.7084 -3.9691 40 1 5.3392 -1.1323 -4.1156 41 1 5.0566 0.3588 -3.1655 42 1 5.6023 -2.4476 -2.2063 43 1 4.6406 -1.1558 -1.4343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:49 Heat of formation + Delta-G solvation = -2.250249 kcal Electronic energy + Delta-G solvation = -24390.635612 eV Core-core repulsion = 21049.674824 eV Total energy + Delta-G solvation = -3340.960788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.24095 -39.89952 -39.03984 -36.35803 -34.94318 -34.16746 -32.77092 -30.80319 -29.57971 -29.52366 -27.63827 -25.70153 -25.13572 -23.52467 -23.22818 -21.46905 -20.98398 -19.24528 -18.55880 -18.36346 -17.74925 -17.59188 -17.13047 -16.89108 -16.40189 -15.58903 -15.32249 -15.04875 -14.80993 -14.48358 -14.20965 -13.94348 -13.64193 -13.53685 -13.42767 -13.13459 -12.85807 -12.70988 -12.63203 -12.37928 -12.29791 -12.15464 -11.94762 -11.92588 -11.86617 -11.58377 -11.57259 -11.46740 -11.38827 -10.61318 -10.31415 -9.55910 -8.76803 -8.08763 -6.29447 -0.09960 0.20241 1.34274 1.35035 1.45389 1.89949 2.30227 2.43217 2.73303 3.10894 3.33631 3.51963 3.61156 3.79766 3.83391 4.01848 4.08044 4.09795 4.35606 4.41412 4.46593 4.56258 4.57938 4.66567 4.71709 4.77223 4.82518 4.91329 5.00233 5.07501 5.10779 5.17353 5.18297 5.21927 5.24627 5.33421 5.45939 5.49487 5.72211 6.01931 6.15322 6.30671 6.54526 6.84704 6.90341 7.03150 7.42225 8.87789 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.007268 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.734863 B = 3851.656128 C = 5057.782135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.064 3.936 3 O -0.304 6.304 4 C 0.272 3.728 5 C 0.021 3.979 6 N -0.406 5.406 7 C -0.003 4.003 8 C 0.394 3.606 9 N -0.653 5.653 10 C 0.293 3.707 11 C -0.531 4.531 12 H 0.048 0.952 13 C 0.010 3.990 14 N -0.928 5.928 15 Si 0.952 3.048 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.276 1.276 19 C 0.170 3.830 20 C -0.135 4.135 21 C -0.112 4.112 22 C -0.112 4.112 23 C -0.145 4.145 24 N -0.523 5.523 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.203 0.797 31 H 0.177 0.823 32 H -0.007 1.007 33 H 0.018 0.982 34 H 0.264 0.736 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.061 0.939 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 6.813 -12.739 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.012 4.012 3 O -0.210 6.210 4 C 0.088 3.912 5 C -0.142 4.142 6 N -0.120 5.120 7 C -0.165 4.165 8 C 0.165 3.835 9 N -0.380 5.380 10 C 0.172 3.828 11 C -0.570 4.570 12 H 0.066 0.934 13 C -0.189 4.189 14 N -0.569 5.569 15 Si 0.778 3.222 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.201 1.201 19 C 0.066 3.934 20 C -0.174 4.174 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.184 4.184 24 N -0.256 5.256 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.220 0.780 31 H 0.194 0.806 32 H 0.011 0.989 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.581 6.892 -12.574 15.777 hybrid contribution -0.455 -1.391 0.937 1.738 sum -7.036 5.501 -11.637 14.669 Atomic orbital electron populations 1.21797 0.89997 1.04113 1.03876 1.22711 0.96836 0.80304 1.01327 1.86209 1.16222 1.31396 1.87138 1.21251 0.85266 0.91328 0.93368 1.23178 0.92308 0.95327 1.03367 1.68409 1.03222 1.32823 1.07579 1.24009 1.01713 0.88165 1.02601 1.18911 0.85266 0.89045 0.90319 1.46225 1.52085 1.34352 1.05366 1.18542 0.93418 0.90930 0.79932 1.21959 1.09711 1.18758 1.06598 0.93368 1.25721 0.97081 0.99522 0.96533 1.70028 1.29048 1.42737 1.15094 0.85644 0.79384 0.79851 0.77309 1.19648 1.20746 1.20061 1.21436 0.94180 0.95426 0.82403 1.22856 1.00291 0.98785 0.95490 1.22419 0.95010 1.02137 0.95411 1.22224 0.97272 0.98638 0.96866 1.22710 0.99207 0.99821 0.96635 1.68155 1.06850 1.34226 1.16356 0.90407 0.88884 0.91291 0.92397 0.93975 0.78019 0.80607 0.98917 0.96385 0.92689 0.90927 0.92083 0.90485 0.90075 0.90387 0.90493 0.93886 0.92026 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 10.28 71.98 0.74 -2.07 16 2 C 0.06 1.85 6.06 71.98 0.44 2.29 16 3 O -0.30 -9.39 10.13 -89.96 -0.91 -10.30 16 4 C 0.27 9.38 7.48 84.75 0.63 10.02 16 5 C 0.02 0.62 11.16 84.83 0.95 1.57 16 6 N -0.41 -13.37 10.48 -194.23 -2.04 -15.40 16 7 C 0.00 -0.11 9.72 84.88 0.82 0.72 16 8 C 0.39 15.73 5.07 132.97 0.67 16.40 16 9 N -0.65 -27.50 2.41 -679.86 -1.64 -29.14 16 10 C 0.29 15.10 5.41 85.63 0.46 15.56 16 11 C -0.53 -29.92 9.39 25.60 0.24 -29.68 16 12 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 13 C 0.01 0.56 5.46 84.65 0.46 1.02 16 14 N -0.93 -54.88 13.29 21.44 0.28 -54.59 16 15 Si 0.95 44.88 29.54 68.60 2.03 46.90 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 C 0.17 6.03 3.42 45.72 0.16 6.19 16 20 C -0.14 -3.79 6.42 31.67 0.20 -3.59 16 21 C -0.11 -2.55 6.91 31.88 0.22 -2.33 16 22 C -0.11 -2.94 6.83 31.67 0.22 -2.72 16 23 C -0.14 -4.82 6.26 31.32 0.20 -4.62 16 24 N -0.52 -20.88 7.87 -305.56 -2.41 -23.29 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.04 1.45 8.06 -2.39 -0.02 1.43 16 30 H 0.20 4.51 8.06 -2.91 -0.02 4.48 16 31 H 0.18 5.70 7.91 -2.91 -0.02 5.68 16 32 H -0.01 -0.41 8.05 -2.39 -0.02 -0.42 16 33 H 0.02 0.97 7.95 -2.39 -0.02 0.95 16 34 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.07 2.73 7.85 -2.39 -0.02 2.72 16 36 H 0.06 1.80 5.88 -2.39 -0.01 1.78 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 2.32 6.05 -2.39 -0.01 2.30 16 Total: -1.00 -64.26 352.24 2.72 -61.55 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.98 Total: 15.51 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 6.41 Total: 8.75 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -5.79 Total: -122.42 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.91 Total: -10.30 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.26 2.72 -61.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.297 kcal (2) G-P(sol) polarization free energy of solvation -64.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds