Wall clock time and date at job start Tue Mar 31 2020 07:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47068 * 2 1 4 4 C 1.35514 * 117.00121 * 179.97438 * 3 2 1 5 5 C 1.39439 * 120.46323 * 180.02562 * 4 3 2 6 6 C 1.38199 * 118.50215 * 179.97438 * 5 4 3 7 7 N 1.32464 * 119.27095 * 0.02562 * 6 5 4 8 8 C 1.32464 * 120.88546 * 0.02562 * 7 6 5 9 9 N 1.38395 * 119.18662 * 179.97438 * 8 7 6 10 10 C 1.46492 * 120.00435 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47156 * 90.00094 * 10 9 8 12 12 H 1.08000 * 119.99787 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00374 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99524 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00151 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46837 * 60.00698 * 15 13 11 17 17 H 1.48502 * 109.46966 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47539 * 300.00429 * 15 13 11 19 19 C 1.46512 * 119.99786 * 0.02562 * 9 8 7 20 20 C 1.54261 * 110.03251 * 57.16115 * 19 9 8 21 21 C 1.54891 * 104.19638 * 217.10555 * 20 19 9 22 22 C 1.54889 * 102.74691 * 37.94079 * 21 20 19 23 23 C 1.53873 * 110.02853 * 299.99397 * 19 9 8 24 24 N 1.32476 * 121.62582 * 359.97438 * 8 7 6 25 25 H 1.08998 * 109.47262 * 299.99669 * 1 2 3 26 26 H 1.09005 * 109.47270 * 60.00227 * 1 2 3 27 27 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46983 * 239.99890 * 2 1 3 29 29 H 1.09005 * 109.47270 * 119.99773 * 2 1 3 30 30 H 1.08001 * 120.75004 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.36488 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47767 * 210.00863 * 10 9 8 33 33 H 1.09003 * 109.46990 * 330.00252 * 10 9 8 34 34 H 0.97001 * 119.99233 * 179.97438 * 14 13 11 35 35 H 1.08993 * 110.01351 * 178.60773 * 19 9 8 36 36 H 1.08999 * 110.49249 * 335.78723 * 20 19 9 37 37 H 1.09011 * 110.48575 * 98.42818 * 20 19 9 38 38 H 1.09007 * 110.75191 * 279.62944 * 21 20 19 39 39 H 1.08996 * 110.75545 * 156.25981 * 21 20 19 40 40 H 1.09001 * 110.48611 * 203.37758 * 22 21 20 41 41 H 1.09005 * 110.48257 * 80.74008 * 22 21 20 42 42 H 1.08998 * 110.03038 * 238.57154 * 23 19 9 43 43 H 1.08995 * 110.03243 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3498 1.5248 0.0005 5 6 3.8931 2.8090 0.0011 6 6 5.2686 2.9431 0.0022 7 7 6.0253 1.8559 0.0021 8 6 5.4808 0.6484 0.0005 9 7 6.3047 -0.4635 0.0000 10 6 5.7216 -1.8074 -0.0012 11 6 5.5221 -2.2672 -1.4224 12 1 5.8022 -1.6229 -2.2427 13 6 4.9822 -3.5103 -1.6755 14 7 4.6407 -4.2946 -0.6766 15 14 4.7343 -4.0799 -3.4372 16 1 6.0437 -4.1084 -4.1370 17 1 4.1421 -5.4417 -3.4384 18 1 3.8195 -3.1423 -4.1366 19 6 7.7603 -0.2966 0.0017 20 6 8.1945 0.5428 1.2209 21 6 9.3587 1.4139 0.6872 22 6 8.8907 1.7690 -0.7460 23 6 8.2029 0.4830 -1.2489 24 7 4.1669 0.4789 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.2535 3.6792 0.0007 31 1 5.7215 3.9236 0.0031 32 1 6.3931 -2.4954 0.5125 33 1 4.7603 -1.7868 0.5123 34 1 4.2605 -5.1691 -0.8547 35 1 8.2475 -1.2713 0.0259 36 1 7.3729 1.1722 1.5630 37 1 8.5409 -0.1050 2.0263 38 1 10.2871 0.8433 0.6602 39 1 9.4750 2.3146 1.2899 40 1 9.7451 2.0161 -1.3760 41 1 8.1815 2.5964 -0.7216 42 1 8.9056 -0.1130 -1.8311 43 1 7.3347 0.7375 -1.8568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:25 Heat of formation + Delta-G solvation = 17.699965 kcal Electronic energy + Delta-G solvation = -24398.211798 eV Core-core repulsion = 21058.116116 eV Total energy + Delta-G solvation = -3340.095681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57051 -38.62822 -37.41860 -34.79184 -32.57043 -32.52381 -31.33606 -29.84065 -28.20964 -27.93289 -26.08860 -24.18203 -23.15514 -22.24786 -21.43465 -20.28068 -19.66695 -17.76868 -17.02463 -16.41632 -15.90885 -15.53536 -15.45264 -14.78542 -14.58490 -14.27799 -13.96234 -13.77401 -13.33396 -13.12265 -12.93016 -12.67137 -12.32607 -12.20834 -11.66356 -11.45355 -11.28467 -11.12581 -10.82971 -10.66721 -10.65690 -10.59974 -10.55462 -10.38253 -10.12999 -10.05317 -9.95982 -9.79567 -9.48045 -8.74619 -8.50895 -8.38572 -7.01639 -6.05001 -4.10576 1.85426 1.93580 3.28665 3.31942 3.32832 3.36594 3.64476 4.40162 4.58252 4.76465 5.09191 5.14297 5.20441 5.27548 5.31090 5.31248 5.41119 5.51217 5.70970 5.76702 5.87165 5.96929 5.98665 6.05440 6.06052 6.07229 6.13026 6.13155 6.25156 6.30002 6.33378 6.47903 6.62550 6.75065 6.83553 6.87640 7.10832 7.38358 7.51720 7.65999 7.84767 7.95042 8.21681 8.39658 8.88519 9.11215 9.53766 11.00710 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.008165 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.178061 B = 3428.356239 C = 5633.088836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.310 6.310 4 C 0.398 3.602 5 C -0.332 4.332 6 C 0.203 3.797 7 N -0.587 5.587 8 C 0.605 3.395 9 N -0.555 5.555 10 C 0.256 3.744 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.063 3.937 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.278 1.278 19 C 0.164 3.836 20 C -0.130 4.130 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.119 4.119 24 N -0.599 5.599 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.134 0.866 31 H 0.160 0.840 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 11.916 2.850 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.215 6.215 4 C 0.207 3.793 5 C -0.360 4.360 6 C 0.036 3.964 7 N -0.315 5.315 8 C 0.250 3.750 9 N -0.266 5.266 10 C 0.137 3.863 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.204 1.204 19 C 0.059 3.941 20 C -0.169 4.169 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.158 4.158 24 N -0.337 5.337 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.178 0.822 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.622 10.828 2.893 11.324 hybrid contribution -0.851 -0.036 -1.097 1.389 sum 0.771 10.792 1.797 10.968 Atomic orbital electron populations 1.21800 0.93529 1.02732 1.02575 1.22631 0.94026 0.80721 1.03743 1.86147 1.17130 1.31136 1.87072 1.19745 0.83819 0.89492 0.86238 1.21297 0.96950 0.95829 1.21930 1.22557 0.89119 0.96928 0.87810 1.68239 1.39418 0.97627 1.26184 1.18930 0.83913 0.86119 0.86048 1.47126 1.03412 1.04269 1.71790 1.19363 0.94742 0.74792 0.97411 1.21386 1.41441 1.00738 0.92233 0.92700 1.24881 0.95421 0.96474 0.97103 1.69921 1.42962 1.09950 1.30603 0.86632 0.78498 0.77684 0.85041 1.20267 1.21193 1.20378 1.21546 0.79367 0.98816 0.94346 1.22761 0.98734 0.98278 0.97078 1.22320 0.97233 0.98840 0.96761 1.22243 0.98805 0.98595 0.95157 1.22365 1.00081 0.95967 0.97355 1.67642 1.04769 1.33334 1.28003 0.92115 0.92023 0.90381 0.90749 0.91339 0.84820 0.82243 0.95084 0.93430 0.92743 0.89355 0.89993 0.92766 0.92457 0.92312 0.93399 0.90420 0.92542 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 37.16 0.38 -1.54 16 2 C 0.06 1.09 6.06 37.16 0.23 1.32 16 3 O -0.31 -5.56 10.13 -18.23 -0.18 -5.74 16 4 C 0.40 7.62 7.53 -16.72 -0.13 7.49 16 5 C -0.33 -5.27 10.12 -39.15 -0.40 -5.66 16 6 C 0.20 3.03 11.29 -17.29 -0.20 2.84 16 7 N -0.59 -10.45 4.97 -14.00 -0.07 -10.52 16 8 C 0.60 12.75 7.06 -322.88 -2.28 10.47 16 9 N -0.56 -12.09 2.48 -168.55 -0.42 -12.51 16 10 C 0.26 6.52 5.14 -5.20 -0.03 6.50 16 11 C -0.52 -14.28 9.39 -34.44 -0.32 -14.60 16 12 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -25.69 13.29 55.43 0.74 -24.96 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C 0.16 3.02 3.36 -66.81 -0.22 2.79 16 20 C -0.13 -2.05 6.03 -25.07 -0.15 -2.20 16 21 C -0.11 -1.49 6.91 -24.74 -0.17 -1.66 16 22 C -0.11 -1.55 6.34 -25.07 -0.16 -1.70 16 23 C -0.12 -2.03 5.77 -25.61 -0.15 -2.18 16 24 N -0.60 -13.11 8.05 -13.99 -0.11 -13.22 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.44 8.12 -51.93 -0.42 1.02 16 29 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 30 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.03 0.82 7.92 -51.93 -0.41 0.41 16 33 H 0.05 1.32 7.33 -51.93 -0.38 0.94 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.09 1.65 7.82 -51.93 -0.41 1.25 16 36 H 0.08 1.42 5.93 -51.93 -0.31 1.11 16 37 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 38 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.12 6.96 -51.93 -0.36 0.76 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.30 7.13 -51.93 -0.37 0.93 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -29.68 347.21 -10.38 -40.06 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.85 Total: 1.61 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -3.69 Total: 3.51 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.14 Total: -61.21 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.18 Total: -5.74 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.68 -10.38 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.761 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds