Wall clock time and date at job start Tue Mar 31 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47068 * 2 1 4 4 C 1.35514 * 117.00121 * 179.97438 * 3 2 1 5 5 C 1.39439 * 120.46323 * 180.02562 * 4 3 2 6 6 C 1.38199 * 118.50215 * 179.97438 * 5 4 3 7 7 N 1.32464 * 119.27095 * 0.02562 * 6 5 4 8 8 C 1.32464 * 120.88546 * 0.02562 * 7 6 5 9 9 N 1.38395 * 119.18662 * 179.97438 * 8 7 6 10 10 C 1.46492 * 120.00435 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47156 * 90.00094 * 10 9 8 12 12 H 1.08000 * 119.99787 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00374 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99524 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00151 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46837 * 60.00698 * 15 13 11 17 17 H 1.48502 * 109.46966 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47539 * 300.00429 * 15 13 11 19 19 C 1.46512 * 119.99786 * 0.02562 * 9 8 7 20 20 C 1.54261 * 110.03251 * 57.16115 * 19 9 8 21 21 C 1.54891 * 104.19638 * 217.10555 * 20 19 9 22 22 C 1.54889 * 102.74691 * 37.94079 * 21 20 19 23 23 C 1.53873 * 110.02853 * 299.99397 * 19 9 8 24 24 N 1.32476 * 121.62582 * 359.97438 * 8 7 6 25 25 H 1.08998 * 109.47262 * 299.99669 * 1 2 3 26 26 H 1.09005 * 109.47270 * 60.00227 * 1 2 3 27 27 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46983 * 239.99890 * 2 1 3 29 29 H 1.09005 * 109.47270 * 119.99773 * 2 1 3 30 30 H 1.08001 * 120.75004 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.36488 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47767 * 210.00863 * 10 9 8 33 33 H 1.09003 * 109.46990 * 330.00252 * 10 9 8 34 34 H 0.97001 * 119.99233 * 179.97438 * 14 13 11 35 35 H 1.08993 * 110.01351 * 178.60773 * 19 9 8 36 36 H 1.08999 * 110.49249 * 335.78723 * 20 19 9 37 37 H 1.09011 * 110.48575 * 98.42818 * 20 19 9 38 38 H 1.09007 * 110.75191 * 279.62944 * 21 20 19 39 39 H 1.08996 * 110.75545 * 156.25981 * 21 20 19 40 40 H 1.09001 * 110.48611 * 203.37758 * 22 21 20 41 41 H 1.09005 * 110.48257 * 80.74008 * 22 21 20 42 42 H 1.08998 * 110.03038 * 238.57154 * 23 19 9 43 43 H 1.08995 * 110.03243 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3498 1.5248 0.0005 5 6 3.8931 2.8090 0.0011 6 6 5.2686 2.9431 0.0022 7 7 6.0253 1.8559 0.0021 8 6 5.4808 0.6484 0.0005 9 7 6.3047 -0.4635 0.0000 10 6 5.7216 -1.8074 -0.0012 11 6 5.5221 -2.2672 -1.4224 12 1 5.8022 -1.6229 -2.2427 13 6 4.9822 -3.5103 -1.6755 14 7 4.6407 -4.2946 -0.6766 15 14 4.7343 -4.0799 -3.4372 16 1 6.0437 -4.1084 -4.1370 17 1 4.1421 -5.4417 -3.4384 18 1 3.8195 -3.1423 -4.1366 19 6 7.7603 -0.2966 0.0017 20 6 8.1945 0.5428 1.2209 21 6 9.3587 1.4139 0.6872 22 6 8.8907 1.7690 -0.7460 23 6 8.2029 0.4830 -1.2489 24 7 4.1669 0.4789 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.2535 3.6792 0.0007 31 1 5.7215 3.9236 0.0031 32 1 6.3931 -2.4954 0.5125 33 1 4.7603 -1.7868 0.5123 34 1 4.2605 -5.1691 -0.8547 35 1 8.2475 -1.2713 0.0259 36 1 7.3729 1.1722 1.5630 37 1 8.5409 -0.1050 2.0263 38 1 10.2871 0.8433 0.6602 39 1 9.4750 2.3146 1.2899 40 1 9.7451 2.0161 -1.3760 41 1 8.1815 2.5964 -0.7216 42 1 8.9056 -0.1130 -1.8311 43 1 7.3347 0.7375 -1.8568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:24 Heat of formation + Delta-G solvation = 2.563256 kcal Electronic energy + Delta-G solvation = -24398.868175 eV Core-core repulsion = 21058.116116 eV Total energy + Delta-G solvation = -3340.752058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.01860 -40.04080 -38.78137 -36.39917 -34.57253 -33.93629 -32.70737 -31.25983 -29.63850 -29.45109 -27.70633 -25.70502 -24.78633 -23.66773 -23.02706 -21.45666 -21.04210 -19.21629 -18.71521 -18.35268 -17.36138 -17.03629 -16.85697 -16.46627 -15.99122 -15.77917 -15.38706 -15.09783 -14.77532 -14.54736 -14.46388 -14.15529 -13.64242 -13.47400 -13.40729 -13.18335 -12.83317 -12.64770 -12.55650 -12.41748 -12.02262 -11.95217 -11.81474 -11.77513 -11.74093 -11.68295 -11.35222 -11.19585 -11.14352 -10.63473 -10.24319 -9.90115 -8.65922 -8.14088 -6.33930 0.46618 0.51801 1.33200 1.34809 1.42928 1.92405 2.12166 2.36985 3.07586 3.13242 3.39895 3.70986 3.89882 3.91990 4.02423 4.08077 4.20801 4.22289 4.45808 4.55828 4.58637 4.67000 4.69148 4.75629 4.80554 4.84692 4.90773 4.98140 5.00993 5.10045 5.14133 5.21159 5.24465 5.31913 5.43670 5.46341 5.50371 5.65190 5.75259 6.02805 6.08190 6.17180 6.31987 6.70975 6.85206 7.32451 7.60555 8.84910 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.008165 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.178061 B = 3428.356239 C = 5633.088836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.068 3.932 3 O -0.308 6.308 4 C 0.368 3.632 5 C -0.316 4.316 6 C 0.206 3.794 7 N -0.578 5.578 8 C 0.587 3.413 9 N -0.570 5.570 10 C 0.279 3.721 11 C -0.528 4.528 12 H 0.041 0.959 13 C 0.017 3.983 14 N -0.923 5.923 15 Si 0.956 3.044 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.279 1.279 19 C 0.155 3.845 20 C -0.123 4.123 21 C -0.102 4.102 22 C -0.100 4.100 23 C -0.114 4.114 24 N -0.643 5.643 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.169 0.831 31 H 0.216 0.784 32 H 0.012 0.988 33 H 0.014 0.986 34 H 0.266 0.734 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.890 14.508 2.351 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.008 4.008 3 O -0.213 6.213 4 C 0.180 3.820 5 C -0.343 4.343 6 C 0.040 3.960 7 N -0.305 5.305 8 C 0.232 3.768 9 N -0.282 5.282 10 C 0.158 3.842 11 C -0.567 4.567 12 H 0.059 0.941 13 C -0.183 4.183 14 N -0.563 5.563 15 Si 0.781 3.219 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.205 1.205 19 C 0.051 3.949 20 C -0.161 4.161 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.153 4.153 24 N -0.382 5.382 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.187 0.813 31 H 0.232 0.768 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.252 13.472 2.399 13.868 hybrid contribution -1.088 -0.757 -0.910 1.607 sum 1.165 12.715 1.489 12.855 Atomic orbital electron populations 1.21778 0.89793 1.03983 1.03922 1.22602 0.96823 0.80306 1.01042 1.86156 1.16847 1.31127 1.87169 1.20304 0.84007 0.90412 0.87318 1.21763 0.97878 0.95328 1.19319 1.23506 0.88890 0.97976 0.85603 1.68318 1.39522 0.97062 1.25624 1.19070 0.83689 0.86977 0.87066 1.46933 1.04709 1.03211 1.73396 1.18738 0.92827 0.76882 0.95774 1.21520 1.41596 1.00856 0.92727 0.94103 1.25659 0.94981 0.96511 1.01112 1.70027 1.43437 1.10296 1.32563 0.85650 0.78636 0.77430 0.80170 1.19326 1.20037 1.20521 1.21784 0.77571 0.98948 0.96603 1.22679 0.99383 0.98124 0.95948 1.22296 0.96365 0.99228 0.96051 1.22189 0.99178 0.96495 0.95931 1.22306 0.99083 0.97645 0.96288 1.67532 1.05783 1.35547 1.29329 0.90429 0.90897 0.89191 0.94136 0.93471 0.81341 0.76807 0.97014 0.96745 0.92469 0.90871 0.91349 0.92404 0.90999 0.90129 0.91176 0.90508 0.92285 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 10.28 71.98 0.74 -2.73 16 2 C 0.07 2.43 6.06 71.98 0.44 2.87 16 3 O -0.31 -11.17 10.13 -88.16 -0.89 -12.06 16 4 C 0.37 14.23 7.53 84.85 0.64 14.87 16 5 C -0.32 -9.29 10.12 22.55 0.23 -9.06 16 6 C 0.21 5.54 11.29 84.59 0.95 6.49 16 7 N -0.58 -19.99 4.97 -198.22 -0.99 -20.98 16 8 C 0.59 25.51 7.06 261.51 1.85 27.35 16 9 N -0.57 -26.14 2.48 -687.16 -1.71 -27.85 16 10 C 0.28 15.24 5.14 85.63 0.44 15.68 16 11 C -0.53 -30.58 9.39 25.60 0.24 -30.34 16 12 H 0.04 2.43 7.81 -2.91 -0.02 2.40 16 13 C 0.02 0.95 5.46 84.65 0.46 1.41 16 14 N -0.92 -54.96 13.29 21.45 0.28 -54.68 16 15 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 19 C 0.15 5.84 3.36 45.71 0.15 6.00 16 20 C -0.12 -3.77 6.03 31.67 0.19 -3.58 16 21 C -0.10 -2.37 6.91 31.89 0.22 -2.15 16 22 C -0.10 -2.55 6.34 31.67 0.20 -2.35 16 23 C -0.11 -3.88 5.77 31.32 0.18 -3.70 16 24 N -0.64 -29.47 8.05 -310.89 -2.50 -31.97 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 29 H 0.05 1.85 8.12 -2.38 -0.02 1.83 16 30 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.22 3.37 8.06 -2.91 -0.02 3.34 16 32 H 0.01 0.68 7.92 -2.39 -0.02 0.66 16 33 H 0.01 0.87 7.33 -2.39 -0.02 0.86 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.07 2.89 7.82 -2.39 -0.02 2.87 16 36 H 0.07 2.31 5.93 -2.39 -0.01 2.29 16 37 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.97 6.96 -2.38 -0.02 1.96 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.03 1.39 7.13 -2.39 -0.02 1.37 16 Total: -1.00 -68.87 347.21 4.14 -64.73 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.98 Total: 14.80 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 6.93 Total: 20.77 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -4.91 Total: -135.48 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.89 Total: -12.06 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -68.87 4.14 -64.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.295 kcal (2) G-P(sol) polarization free energy of solvation -68.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds