Wall clock time and date at job start Tue Mar 31 2020 07:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99869 * 2 1 4 4 C 1.50698 * 109.46798 * 179.97438 * 3 2 1 5 5 C 1.38625 * 120.40324 * 359.97438 * 4 3 2 6 6 C 1.38584 * 118.55842 * 179.72791 * 5 4 3 7 7 N 1.32289 * 119.19724 * 0.25213 * 6 5 4 8 8 C 1.32476 * 120.74352 * 0.02562 * 7 6 5 9 9 N 1.38405 * 119.22131 * 179.97438 * 8 7 6 10 10 C 1.46494 * 120.00441 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46939 * 89.99913 * 10 9 8 12 12 H 1.07997 * 120.00223 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99947 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00103 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99948 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47253 * 90.00299 * 15 13 11 17 17 H 1.48512 * 109.46822 * 209.99876 * 15 13 11 18 18 H 1.48494 * 109.47166 * 329.99435 * 15 13 11 19 19 C 1.46507 * 119.99756 * 359.97438 * 9 8 7 20 20 C 1.54269 * 110.03231 * 57.16865 * 19 9 8 21 21 C 1.54893 * 104.19458 * 217.10665 * 20 19 9 22 22 C 1.54895 * 102.74898 * 37.93993 * 21 20 19 23 23 C 1.53880 * 110.03130 * 300.00112 * 19 9 8 24 24 N 1.32266 * 120.40172 * 180.21697 * 4 3 2 25 25 H 1.09000 * 109.47175 * 300.00177 * 1 2 3 26 26 H 1.08998 * 109.47082 * 60.00165 * 1 2 3 27 27 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47042 * 60.00060 * 3 2 1 29 29 H 1.09001 * 109.46804 * 299.99623 * 3 2 1 30 30 H 1.08002 * 120.72333 * 0.02562 * 5 4 3 31 31 H 1.08002 * 120.40530 * 180.23213 * 6 5 4 32 32 H 1.09003 * 109.47512 * 209.99856 * 10 9 8 33 33 H 1.08999 * 109.47351 * 329.99884 * 10 9 8 34 34 H 0.96998 * 120.00425 * 180.02562 * 14 13 11 35 35 H 1.09003 * 110.01439 * 178.60932 * 19 9 8 36 36 H 1.09000 * 110.48338 * 335.78179 * 20 19 9 37 37 H 1.08995 * 110.48646 * 98.42767 * 20 19 9 38 38 H 1.09000 * 110.75556 * 279.62620 * 21 20 19 39 39 H 1.09000 * 110.75508 * 156.25580 * 21 20 19 40 40 H 1.08999 * 110.48521 * 203.37900 * 22 21 20 41 41 H 1.08998 * 110.59547 * 80.79436 * 22 21 20 42 42 H 1.09000 * 110.03011 * 238.56892 * 23 19 9 43 43 H 1.09003 * 110.02990 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1174 -0.0608 0.0016 6 6 5.5017 -0.1258 -0.0036 7 7 6.2004 0.9975 -0.0043 8 6 5.5914 2.1739 0.0005 9 7 6.3534 3.3293 0.0002 10 6 5.6977 4.6393 0.0048 11 6 5.4775 5.0858 1.4273 12 1 5.7947 4.4569 2.2459 13 6 4.8711 6.2973 1.6835 14 7 4.6795 6.6871 2.9248 15 14 4.3218 7.3848 0.2676 16 1 2.9246 7.0458 -0.1039 17 1 4.3922 8.8094 0.6814 18 1 5.2121 7.1642 -0.9003 19 6 7.8158 3.2422 -0.0048 20 6 8.2926 2.4287 -1.2258 21 6 9.5038 1.6221 -0.6953 22 6 9.0590 1.2408 0.7386 23 6 8.3032 2.4869 1.2442 24 7 4.2698 2.2708 0.0051 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.5228 -0.9624 0.0016 31 1 6.0040 -1.0819 -0.0067 32 1 6.3292 5.3636 -0.5097 33 1 4.7375 4.5669 -0.5060 34 1 4.2525 7.5392 3.1052 35 1 8.2490 4.2422 -0.0292 36 1 7.5058 1.7557 -1.5665 37 1 8.6013 3.0951 -2.0312 38 1 10.3997 2.2424 -0.6697 39 1 9.6678 0.7295 -1.2991 40 1 9.9271 1.0403 1.3666 41 1 8.3967 0.3754 0.7172 42 1 8.9736 3.1200 1.8254 43 1 7.4515 2.1856 1.8542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:24 Heat of formation + Delta-G solvation = 21.677880 kcal Electronic energy + Delta-G solvation = -24101.583797 eV Core-core repulsion = 20761.660611 eV Total energy + Delta-G solvation = -3339.923186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54349 -38.28912 -37.55944 -34.87029 -33.34750 -32.47105 -30.75235 -28.60807 -28.22280 -27.78263 -26.29948 -25.69755 -23.47162 -22.11051 -21.23090 -20.28893 -19.37618 -17.22928 -16.85156 -16.53713 -16.00156 -15.93809 -15.39282 -15.20152 -14.57489 -14.42835 -14.30283 -13.95709 -13.53736 -13.32282 -12.93294 -12.56836 -12.39755 -12.24000 -11.94032 -11.74530 -11.41838 -11.24291 -10.72192 -10.64539 -10.61870 -10.58943 -10.41879 -10.22067 -10.19866 -10.03867 -9.89147 -9.70862 -9.49820 -9.13950 -8.58925 -8.36799 -6.98603 -6.07381 -4.05150 1.69496 1.85333 3.26145 3.29140 3.35089 3.35996 3.76434 4.39244 4.48146 4.78906 4.86961 5.06336 5.11655 5.19637 5.24829 5.26380 5.29459 5.40047 5.51010 5.57091 5.59089 5.79646 5.84164 5.86937 5.95167 6.02398 6.04574 6.11189 6.17394 6.29313 6.30510 6.47756 6.67495 6.71303 6.79588 6.82630 6.87002 7.03389 7.08335 7.56898 7.62581 7.74505 8.27203 8.51973 8.95149 9.04559 9.52969 11.06122 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.009243 B = 0.007730 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.533622 B = 3621.352165 C = 6061.084440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.113 3.887 4 C 0.211 3.789 5 C -0.291 4.291 6 C 0.178 3.822 7 N -0.565 5.565 8 C 0.579 3.421 9 N -0.555 5.555 10 C 0.227 3.773 11 C -0.520 4.520 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.899 5.899 15 Si 0.874 3.126 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.165 3.835 20 C -0.130 4.130 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.119 4.119 24 N -0.549 5.549 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.156 0.844 32 H 0.028 0.972 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 -13.163 -8.035 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C 0.036 3.964 4 C 0.061 3.939 5 C -0.318 4.318 6 C 0.010 3.990 7 N -0.289 5.289 8 C 0.224 3.776 9 N -0.266 5.266 10 C 0.106 3.894 11 C -0.559 4.559 12 H 0.091 0.909 13 C -0.129 4.129 14 N -0.538 5.538 15 Si 0.701 3.299 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.191 1.191 19 C 0.061 3.939 20 C -0.169 4.169 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.158 4.158 24 N -0.273 5.273 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.173 0.827 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.738 -12.066 -7.921 14.453 hybrid contribution -1.212 0.231 -0.425 1.305 sum -0.473 -11.835 -8.347 14.490 Atomic orbital electron populations 1.22735 0.80583 1.02693 1.00284 1.87799 1.19811 1.27338 1.95610 1.20956 0.88519 0.84519 1.02373 1.20743 0.94676 0.88708 0.89768 1.22043 0.96498 0.99469 1.13768 1.22788 0.90905 0.96111 0.89244 1.68174 1.40139 0.97681 1.22862 1.19121 0.84597 0.86202 0.87647 1.46661 1.03921 1.02957 1.73051 1.19734 0.93343 0.78049 0.98320 1.21336 1.39261 1.04094 0.91235 0.90863 1.24829 0.95273 0.97449 0.95390 1.69900 1.43579 1.21819 1.18475 0.86890 0.79857 0.80064 0.83079 1.20002 1.21180 1.19124 1.21552 0.78682 0.99243 0.94458 1.22763 0.98347 0.98739 0.97046 1.22320 0.97021 0.99002 0.96794 1.22245 0.98577 0.98901 0.95125 1.22360 0.99914 0.96231 0.97269 1.67553 1.05518 1.32398 1.21802 0.93797 0.93970 0.89530 0.90320 0.90805 0.84301 0.82676 0.95376 0.94159 0.92669 0.89328 0.90077 0.92756 0.92368 0.92298 0.93286 0.90522 0.92334 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.15 9.26 -35.23 -0.33 -5.47 16 3 C 0.11 1.70 6.50 36.00 0.23 1.94 16 4 C 0.21 3.80 6.82 -82.26 -0.56 3.24 16 5 C -0.29 -4.56 9.47 -39.31 -0.37 -4.93 16 6 C 0.18 2.71 11.30 -17.23 -0.19 2.52 16 7 N -0.56 -10.15 4.99 -13.93 -0.07 -10.22 16 8 C 0.58 12.18 7.06 -322.81 -2.28 9.90 16 9 N -0.55 -12.01 2.48 -168.52 -0.42 -12.42 16 10 C 0.23 5.52 4.21 -5.19 -0.02 5.50 16 11 C -0.52 -14.77 9.94 -34.44 -0.34 -15.11 16 12 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 13 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 15 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.16 6.54 56.52 0.37 -5.80 16 19 C 0.17 3.04 3.36 -66.80 -0.22 2.82 16 20 C -0.13 -2.03 6.03 -25.07 -0.15 -2.18 16 21 C -0.11 -1.49 6.91 -24.73 -0.17 -1.67 16 22 C -0.11 -1.59 6.34 -25.07 -0.16 -1.75 16 23 C -0.12 -2.09 5.77 -25.61 -0.15 -2.24 16 24 N -0.55 -11.81 9.05 -10.15 -0.09 -11.90 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.14 1.91 7.11 -52.49 -0.37 1.54 16 31 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.03 0.67 6.98 -51.93 -0.36 0.31 16 33 H 0.04 1.01 6.76 -51.93 -0.35 0.66 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.09 1.63 7.82 -51.93 -0.41 1.22 16 36 H 0.08 1.38 5.93 -51.93 -0.31 1.07 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.14 6.97 -51.93 -0.36 0.78 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.39 7.13 -51.93 -0.37 1.02 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -32.00 342.69 -9.78 -41.79 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.77 Total: 1.74 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -3.37 Total: 1.46 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.19 Total: -61.29 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.33 Total: -5.47 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.00 -9.78 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.463 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds