Wall clock time and date at job start Tue Mar 31 2020 07:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00484 * 2 1 4 4 C 1.50692 * 109.47727 * 179.97438 * 3 2 1 5 5 C 1.38820 * 119.99169 * 359.97438 * 4 3 2 6 6 C 1.38561 * 118.04301 * 179.97438 * 5 4 3 7 7 C 1.39481 * 117.89990 * 0.02562 * 6 5 4 8 8 N 1.39046 * 120.15404 * 180.02562 * 7 6 5 9 9 C 1.46508 * 119.99870 * 190.46989 * 8 7 6 10 10 C 1.50692 * 109.47524 * 270.00158 * 9 8 7 11 11 H 1.08004 * 119.99779 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00342 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00363 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99728 * 0.02562 * 12 10 9 15 15 H 1.48490 * 109.47435 * 89.99854 * 14 12 10 16 16 H 1.48500 * 109.46872 * 209.99963 * 14 12 10 17 17 H 1.48495 * 109.46997 * 329.99463 * 14 12 10 18 18 C 1.46503 * 120.00350 * 10.47284 * 8 7 6 19 19 C 1.54890 * 110.75658 * 125.81782 * 18 8 7 20 20 C 1.54260 * 104.31257 * 156.32538 * 19 18 8 21 21 C 1.53873 * 106.59958 * 336.32447 * 20 19 18 22 22 C 1.54267 * 106.59802 * 359.97438 * 21 20 19 23 23 N 1.32488 * 119.68673 * 0.27178 * 7 6 5 24 24 N 1.28353 * 122.07196 * 359.40013 * 23 7 6 25 25 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47117 * 300.00104 * 1 2 3 27 27 H 1.09001 * 109.46960 * 59.99739 * 1 2 3 28 28 H 1.09006 * 109.46758 * 59.99706 * 3 2 1 29 29 H 1.09003 * 109.47127 * 300.00103 * 3 2 1 30 30 H 1.08008 * 120.97893 * 0.02562 * 5 4 3 31 31 H 1.08000 * 121.04874 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47037 * 30.00289 * 9 8 7 33 33 H 1.09003 * 109.46620 * 149.99595 * 9 8 7 34 34 H 0.96994 * 120.00132 * 179.97438 * 13 12 10 35 35 H 1.09001 * 110.81145 * 2.48154 * 18 8 7 36 36 H 1.09000 * 110.48736 * 37.57230 * 19 18 8 37 37 H 1.09007 * 110.48444 * 275.06931 * 19 18 8 38 38 H 1.09006 * 110.03368 * 95.61023 * 20 19 18 39 39 H 1.09001 * 110.03361 * 216.98734 * 20 19 18 40 40 H 1.08993 * 110.03876 * 119.28484 * 21 20 19 41 41 H 1.09008 * 110.03127 * 240.71854 * 21 20 19 42 42 H 1.09001 * 110.48523 * 142.28504 * 22 21 20 43 43 H 1.08994 * 110.49057 * 264.80598 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1094 -0.0669 0.0016 6 6 5.4936 -0.1292 0.0017 7 6 6.2010 1.0728 0.0012 8 7 7.5915 1.0649 0.0006 9 6 8.3311 2.3085 0.2307 10 6 8.5857 2.9929 -1.0874 11 1 8.2322 2.5461 -2.0050 12 6 9.2697 4.1895 -1.1222 13 7 9.4923 4.7866 -2.2727 14 14 9.8816 4.9619 0.4647 15 1 11.2525 4.4719 0.7573 16 1 9.9047 6.4396 0.3191 17 1 8.9740 4.5885 1.5791 18 6 8.3169 -0.1868 -0.2301 19 6 9.3259 -0.0299 -1.3947 20 6 10.3838 -1.1215 -1.1325 21 6 10.3283 -1.4348 0.3730 22 6 9.2390 -0.5221 0.9732 23 7 5.5419 2.2221 0.0062 24 7 4.2594 2.2723 0.0002 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.5123 -0.9670 0.0016 31 1 6.0084 -1.0786 0.0020 32 1 7.7460 2.9655 0.8742 33 1 9.2824 2.0816 0.7121 34 1 9.9732 5.6285 -2.2971 35 1 7.6243 -1.0052 -0.4265 36 1 9.7840 0.9589 -1.3720 37 1 8.8326 -0.1987 -2.3521 38 1 10.1481 -2.0161 -1.7090 39 1 11.3740 -0.7542 -1.4020 40 1 10.0657 -2.4813 0.5273 41 1 11.2918 -1.2191 0.8350 42 1 8.6804 -1.0516 1.7450 43 1 9.6838 0.3859 1.3804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166536825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:03 Heat of formation + Delta-G solvation = 20.944109 kcal Electronic energy + Delta-G solvation = -23599.662838 eV Core-core repulsion = 20259.707833 eV Total energy + Delta-G solvation = -3339.955005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50547 -38.49077 -37.80328 -35.12048 -32.80919 -32.59793 -31.25461 -28.52543 -28.30725 -27.98990 -26.54820 -25.13373 -23.97050 -22.24779 -21.65541 -19.97335 -19.28098 -17.34352 -17.13422 -16.77587 -16.24581 -16.03566 -15.79017 -15.14956 -14.93021 -14.46770 -14.24075 -13.99217 -13.38943 -13.09295 -12.93425 -12.72165 -12.43539 -12.33557 -11.88833 -11.84184 -11.56843 -11.52920 -11.00015 -10.88419 -10.75897 -10.53627 -10.44464 -10.24926 -10.20437 -10.04384 -9.95013 -9.77010 -9.49857 -9.24577 -8.86400 -8.53942 -6.98236 -6.04180 -4.00963 1.41089 1.70709 3.28531 3.34025 3.40575 3.41709 3.61424 4.18431 4.43121 4.77686 4.91579 4.92711 5.01652 5.07587 5.14633 5.15975 5.19079 5.25273 5.28399 5.40522 5.47028 5.50200 5.53899 5.63498 5.75436 5.80106 5.87021 5.92890 6.09022 6.15862 6.16172 6.29676 6.36680 6.40687 6.56370 6.65140 6.73768 6.94888 7.05289 7.06861 7.63344 7.80623 8.01627 8.55468 9.00879 9.51818 9.56575 11.09052 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.005078 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.679720 B = 5512.504459 C = 6989.109581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.133 3.867 4 C -0.022 4.022 5 C -0.060 4.060 6 C -0.200 4.200 7 C 0.355 3.645 8 N -0.565 5.565 9 C 0.223 3.777 10 C -0.517 4.517 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.897 5.897 14 Si 0.869 3.131 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.264 1.264 18 C 0.148 3.852 19 C -0.140 4.140 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.138 4.138 23 N -0.275 5.275 24 N -0.196 5.196 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.040 0.960 33 H 0.027 0.973 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 -14.066 5.943 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C 0.055 3.945 4 C -0.171 4.171 5 C -0.088 4.088 6 C -0.234 4.234 7 C 0.113 3.887 8 N -0.273 5.273 9 C 0.102 3.898 10 C -0.555 4.555 11 H 0.094 0.906 12 C -0.128 4.128 13 N -0.535 5.535 14 Si 0.696 3.304 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.189 1.189 18 C 0.043 3.957 19 C -0.178 4.178 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.176 4.176 23 N -0.128 5.128 24 N -0.041 5.041 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.445 -12.417 5.872 16.124 hybrid contribution 0.127 -0.828 0.597 1.028 sum -8.318 -13.245 6.469 16.925 Atomic orbital electron populations 1.22723 0.80599 1.02716 1.00198 1.87776 1.19853 1.27817 1.95568 1.20675 0.88083 0.84231 1.01475 1.21963 0.96315 0.91615 1.07226 1.21782 0.93848 0.99035 0.94139 1.21843 0.94646 0.98518 1.08383 1.20114 0.87292 0.91027 0.90251 1.46680 0.99821 1.09554 1.71247 1.19696 0.91098 0.80916 0.98043 1.21282 1.35553 1.05939 0.92747 0.90585 1.24815 0.95732 0.96470 0.95772 1.69889 1.41425 1.17600 1.24613 0.86956 0.79373 0.79224 0.84862 1.20302 1.21010 1.18862 1.22084 0.93017 0.85464 0.95161 1.22891 0.95957 1.01757 0.97179 1.22083 0.99842 0.98578 0.95552 1.22034 0.98766 0.98843 0.96059 1.22821 0.96953 1.00229 0.97622 1.73346 0.99583 1.21810 1.18044 1.72632 0.99370 1.26395 1.05690 0.89591 0.93937 0.93885 0.91501 0.91408 0.83656 0.84230 0.94171 0.95571 0.92671 0.89725 0.87277 0.92062 0.92464 0.91759 0.92216 0.91904 0.91966 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.64 9.22 -35.23 -0.32 -4.96 16 3 C 0.13 1.74 6.49 36.00 0.23 1.97 16 4 C -0.02 -0.37 6.87 -82.40 -0.57 -0.93 16 5 C -0.06 -0.92 9.49 -39.25 -0.37 -1.29 16 6 C -0.20 -3.29 9.36 -39.00 -0.36 -3.66 16 7 C 0.35 7.28 7.40 -154.77 -1.15 6.13 16 8 N -0.57 -11.54 2.62 -164.97 -0.43 -11.98 16 9 C 0.22 5.28 3.52 -5.19 -0.02 5.26 16 10 C -0.52 -14.27 7.95 -34.44 -0.27 -14.54 16 11 H 0.08 2.34 8.00 -52.48 -0.42 1.92 16 12 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 14 Si 0.87 21.32 27.47 -169.99 -4.67 16.65 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 18 C 0.15 2.43 3.22 -65.74 -0.21 2.22 16 19 C -0.14 -2.40 6.07 -25.07 -0.15 -2.55 16 20 C -0.12 -1.65 6.80 -25.62 -0.17 -1.82 16 21 C -0.12 -1.46 6.80 -25.61 -0.17 -1.63 16 22 C -0.14 -1.97 6.39 -24.87 -0.16 -2.13 16 23 N -0.28 -6.36 10.44 31.23 0.33 -6.03 16 24 N -0.20 -4.07 11.41 33.61 0.38 -3.68 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.15 1.85 7.09 -52.48 -0.37 1.48 16 31 H 0.14 1.87 6.04 -52.49 -0.32 1.56 16 32 H 0.04 1.03 6.63 -51.93 -0.34 0.68 16 33 H 0.03 0.60 5.76 -51.93 -0.30 0.30 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.08 1.21 5.60 -51.93 -0.29 0.92 16 36 H 0.11 2.30 5.75 -51.93 -0.30 2.00 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.23 6.33 -51.93 -0.33 0.90 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -32.20 341.78 -7.64 -39.84 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.49 Total: 1.12 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.36 Total: -9.57 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 1.05 Total: -48.23 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.32 Total: -4.96 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.20 -7.64 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166536825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.785 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds