Wall clock time and date at job start Tue Mar 31 2020 07:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00484 * 2 1 4 4 C 1.50692 * 109.47727 * 179.97438 * 3 2 1 5 5 C 1.38820 * 119.99169 * 359.97438 * 4 3 2 6 6 C 1.38561 * 118.04301 * 179.97438 * 5 4 3 7 7 C 1.39481 * 117.89990 * 0.02562 * 6 5 4 8 8 N 1.39046 * 120.15404 * 180.02562 * 7 6 5 9 9 C 1.46508 * 119.99870 * 190.46989 * 8 7 6 10 10 C 1.50692 * 109.47524 * 270.00158 * 9 8 7 11 11 H 1.08004 * 119.99779 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00342 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00363 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99728 * 0.02562 * 12 10 9 15 15 H 1.48490 * 109.47435 * 89.99854 * 14 12 10 16 16 H 1.48500 * 109.46872 * 209.99963 * 14 12 10 17 17 H 1.48495 * 109.46997 * 329.99463 * 14 12 10 18 18 C 1.46503 * 120.00350 * 10.47284 * 8 7 6 19 19 C 1.54890 * 110.75658 * 125.81782 * 18 8 7 20 20 C 1.54260 * 104.31257 * 156.32538 * 19 18 8 21 21 C 1.53873 * 106.59958 * 336.32447 * 20 19 18 22 22 C 1.54267 * 106.59802 * 359.97438 * 21 20 19 23 23 N 1.32488 * 119.68673 * 0.27178 * 7 6 5 24 24 N 1.28353 * 122.07196 * 359.40013 * 23 7 6 25 25 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47117 * 300.00104 * 1 2 3 27 27 H 1.09001 * 109.46960 * 59.99739 * 1 2 3 28 28 H 1.09006 * 109.46758 * 59.99706 * 3 2 1 29 29 H 1.09003 * 109.47127 * 300.00103 * 3 2 1 30 30 H 1.08008 * 120.97893 * 0.02562 * 5 4 3 31 31 H 1.08000 * 121.04874 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.47037 * 30.00289 * 9 8 7 33 33 H 1.09003 * 109.46620 * 149.99595 * 9 8 7 34 34 H 0.96994 * 120.00132 * 179.97438 * 13 12 10 35 35 H 1.09001 * 110.81145 * 2.48154 * 18 8 7 36 36 H 1.09000 * 110.48736 * 37.57230 * 19 18 8 37 37 H 1.09007 * 110.48444 * 275.06931 * 19 18 8 38 38 H 1.09006 * 110.03368 * 95.61023 * 20 19 18 39 39 H 1.09001 * 110.03361 * 216.98734 * 20 19 18 40 40 H 1.08993 * 110.03876 * 119.28484 * 21 20 19 41 41 H 1.09008 * 110.03127 * 240.71854 * 21 20 19 42 42 H 1.09001 * 110.48523 * 142.28504 * 22 21 20 43 43 H 1.08994 * 110.49057 * 264.80598 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1094 -0.0669 0.0016 6 6 5.4936 -0.1292 0.0017 7 6 6.2010 1.0728 0.0012 8 7 7.5915 1.0649 0.0006 9 6 8.3311 2.3085 0.2307 10 6 8.5857 2.9929 -1.0874 11 1 8.2322 2.5461 -2.0050 12 6 9.2697 4.1895 -1.1222 13 7 9.4923 4.7866 -2.2727 14 14 9.8816 4.9619 0.4647 15 1 11.2525 4.4719 0.7573 16 1 9.9047 6.4396 0.3191 17 1 8.9740 4.5885 1.5791 18 6 8.3169 -0.1868 -0.2301 19 6 9.3259 -0.0299 -1.3947 20 6 10.3838 -1.1215 -1.1325 21 6 10.3283 -1.4348 0.3730 22 6 9.2390 -0.5221 0.9732 23 7 5.5419 2.2221 0.0062 24 7 4.2594 2.2723 0.0002 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.5123 -0.9670 0.0016 31 1 6.0084 -1.0786 0.0020 32 1 7.7460 2.9655 0.8742 33 1 9.2824 2.0816 0.7121 34 1 9.9732 5.6285 -2.2971 35 1 7.6243 -1.0052 -0.4265 36 1 9.7840 0.9589 -1.3720 37 1 8.8326 -0.1987 -2.3521 38 1 10.1481 -2.0161 -1.7090 39 1 11.3740 -0.7542 -1.4020 40 1 10.0657 -2.4813 0.5273 41 1 11.2918 -1.2191 0.8350 42 1 8.6804 -1.0516 1.7450 43 1 9.6838 0.3859 1.3804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166536825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:03 Heat of formation + Delta-G solvation = 0.131923 kcal Electronic energy + Delta-G solvation = -23600.565322 eV Core-core repulsion = 20259.707833 eV Total energy + Delta-G solvation = -3340.857489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92332 -39.77563 -38.74274 -36.51040 -34.78288 -34.02407 -32.76425 -30.20986 -29.51949 -29.12343 -27.63316 -26.23902 -25.56475 -23.72902 -23.19512 -21.09170 -20.66157 -18.93221 -18.75052 -18.49158 -17.34014 -16.97879 -16.81499 -16.52434 -16.30158 -15.91948 -15.69817 -15.36426 -14.70620 -14.47103 -14.31706 -14.17218 -13.76195 -13.65615 -13.39402 -13.21509 -13.07303 -12.66327 -12.35362 -12.30913 -12.03575 -11.97288 -11.88260 -11.82443 -11.68624 -11.39558 -11.25414 -11.16016 -11.03863 -10.73629 -10.56520 -10.28969 -8.53923 -8.26464 -6.26988 0.05632 0.32944 1.31088 1.36034 1.45831 2.02272 2.34336 2.55282 2.76199 3.07421 3.59468 3.70246 3.74862 3.79298 3.88513 3.91323 4.13497 4.19061 4.39476 4.44481 4.47477 4.53579 4.60968 4.61617 4.65935 4.71274 4.76886 4.87062 4.87341 4.93118 4.94185 4.98040 5.12612 5.14796 5.27217 5.31938 5.38610 5.48641 5.55356 5.61800 6.05361 6.17073 6.46644 6.52293 6.72498 7.33386 8.07838 8.90543 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.005078 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.679720 B = 5512.504459 C = 6989.109581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.139 3.861 4 C -0.014 4.014 5 C -0.052 4.052 6 C -0.185 4.185 7 C 0.330 3.670 8 N -0.577 5.577 9 C 0.240 3.760 10 C -0.504 4.504 11 H 0.027 0.973 12 C 0.012 3.988 13 N -0.948 5.948 14 Si 0.937 3.063 15 H -0.256 1.256 16 H -0.285 1.285 17 H -0.256 1.256 18 C 0.143 3.857 19 C -0.143 4.143 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.133 4.133 23 N -0.338 5.338 24 N -0.238 5.238 25 H 0.105 0.895 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.020 0.980 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 -17.370 8.000 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C 0.060 3.940 4 C -0.166 4.166 5 C -0.080 4.080 6 C -0.218 4.218 7 C 0.088 3.912 8 N -0.286 5.286 9 C 0.118 3.882 10 C -0.543 4.543 11 H 0.045 0.955 12 C -0.185 4.185 13 N -0.589 5.589 14 Si 0.760 3.240 15 H -0.181 1.181 16 H -0.211 1.211 17 H -0.180 1.180 18 C 0.039 3.961 19 C -0.182 4.182 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.172 4.172 23 N -0.189 5.189 24 N -0.079 5.079 25 H 0.123 0.877 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.199 0.801 31 H 0.194 0.806 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.464 -15.737 7.937 20.005 hybrid contribution 0.202 0.085 -0.157 0.270 sum -9.262 -15.652 7.780 19.781 Atomic orbital electron populations 1.22980 0.78434 1.04338 1.01135 1.87728 1.22063 1.26705 1.95732 1.20629 0.85667 0.85301 1.02375 1.22657 0.98212 0.91542 1.04214 1.22201 0.93677 0.99668 0.92469 1.22197 0.95055 0.98321 1.06203 1.20447 0.87407 0.92093 0.91222 1.46630 1.00051 1.09519 1.72435 1.19215 0.91598 0.82267 0.95117 1.21405 1.34140 1.05839 0.92930 0.95478 1.25712 0.96269 0.97173 0.99345 1.70052 1.43296 1.18387 1.27212 0.85870 0.79747 0.77908 0.80428 1.18092 1.21087 1.17972 1.22408 0.93378 0.84515 0.95751 1.22795 0.97361 1.00678 0.97317 1.22052 0.98059 0.97881 0.97350 1.22030 0.98437 1.00055 0.94293 1.22802 0.97191 1.00012 0.97194 1.73154 1.01029 1.24186 1.20489 1.72508 0.98960 1.28453 1.08019 0.87658 0.92850 0.93135 0.90242 0.90790 0.80079 0.80592 0.96210 0.94211 0.92660 0.86880 0.92104 0.93559 0.90052 0.92245 0.89058 0.91161 0.89562 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -8.26 9.22 -148.98 -1.37 -9.63 16 3 C 0.14 3.33 6.49 71.23 0.46 3.79 16 4 C -0.01 -0.47 6.87 42.70 0.29 -0.18 16 5 C -0.05 -1.47 9.49 22.49 0.21 -1.25 16 6 C -0.18 -5.66 9.36 22.65 0.21 -5.45 16 7 C 0.33 13.65 7.40 133.11 0.99 14.63 16 8 N -0.58 -23.91 2.62 -675.86 -1.77 -25.68 16 9 C 0.24 11.79 3.52 85.63 0.30 12.09 16 10 C -0.50 -29.57 7.95 25.60 0.20 -29.37 16 11 H 0.03 1.80 8.00 -2.91 -0.02 1.78 16 12 C 0.01 0.73 5.47 84.65 0.46 1.19 16 13 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 14 Si 0.94 45.42 27.47 68.60 1.88 47.31 16 15 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 17 H -0.26 -11.95 6.54 99.48 0.65 -11.30 16 18 C 0.14 4.53 3.22 46.41 0.15 4.68 16 19 C -0.14 -5.00 6.07 31.67 0.19 -4.81 16 20 C -0.12 -2.90 6.80 31.32 0.21 -2.68 16 21 C -0.11 -2.31 6.80 31.32 0.21 -2.10 16 22 C -0.13 -3.48 6.39 31.80 0.20 -3.28 16 23 N -0.34 -16.19 10.44 -55.10 -0.58 -16.77 16 24 N -0.24 -10.07 11.41 -47.57 -0.54 -10.61 16 25 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.18 3.79 7.09 -2.91 -0.02 3.77 16 31 H 0.18 3.95 6.04 -2.91 -0.02 3.93 16 32 H 0.02 1.05 6.63 -2.39 -0.02 1.04 16 33 H 0.04 1.84 5.76 -2.39 -0.01 1.83 16 34 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 35 H 0.11 2.89 5.60 -2.39 -0.01 2.87 16 36 H 0.06 2.72 5.75 -2.39 -0.01 2.71 16 37 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.05 1.67 6.33 -2.39 -0.02 1.65 16 Total: -1.00 -76.95 341.78 4.22 -72.73 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.95 Total: 14.44 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 5.35 Total: -11.15 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -2.59 Total: -113.70 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.37 Total: -9.63 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -76.95 4.22 -72.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166536825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.862 kcal (2) G-P(sol) polarization free energy of solvation -76.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds