Wall clock time and date at job start Tue Mar 31 2020 07:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.47295 * 2 1 4 4 C 1.35748 * 117.00275 * 180.02562 * 3 2 1 5 5 N 1.32259 * 120.11484 * 359.97438 * 4 3 2 6 6 C 1.32424 * 120.02010 * 179.97438 * 5 4 3 7 7 C 1.37949 * 120.25316 * 0.02562 * 6 5 4 8 8 N 1.32392 * 120.23891 * 359.97438 * 7 6 5 9 9 C 1.32453 * 119.97503 * 0.02562 * 8 7 6 10 10 N 1.39187 * 120.12733 * 180.02562 * 9 8 7 11 11 C 1.46900 * 110.99836 * 123.93219 * 10 9 8 12 12 C 1.50701 * 109.47303 * 170.00301 * 11 10 9 13 13 H 1.08003 * 119.99634 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00243 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99847 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47093 * 89.99783 * 16 14 12 18 18 H 1.48499 * 109.47081 * 210.00017 * 16 14 12 19 19 H 1.48500 * 109.46726 * 329.99732 * 16 14 12 20 20 C 1.46897 * 111.00056 * 359.97438 * 10 9 8 21 21 C 1.54269 * 110.03219 * 56.11672 * 20 10 9 22 22 C 1.54882 * 104.19546 * 217.10498 * 21 20 10 23 23 C 1.54886 * 102.74985 * 37.94747 * 22 21 20 24 24 C 1.53873 * 110.03183 * 298.95318 * 20 10 9 25 25 H 1.08996 * 109.47036 * 299.99842 * 1 2 3 26 26 H 1.09003 * 109.47077 * 60.00311 * 1 2 3 27 27 H 1.08999 * 109.46798 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47023 * 239.99678 * 2 1 3 29 29 H 1.09000 * 109.47215 * 120.00447 * 2 1 3 30 30 H 1.07998 * 119.87279 * 179.72722 * 6 5 4 31 31 H 1.08004 * 119.88072 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47243 * 290.00197 * 11 10 9 33 33 H 1.09004 * 109.47154 * 49.99882 * 11 10 9 34 34 H 0.97007 * 119.99559 * 180.02562 * 15 14 12 35 35 H 1.08997 * 110.01786 * 177.56112 * 20 10 9 36 36 H 1.08996 * 110.49005 * 335.78865 * 21 20 10 37 37 H 1.09009 * 110.48167 * 98.42663 * 21 20 10 38 38 H 1.09005 * 110.75919 * 279.62522 * 22 21 20 39 39 H 1.09001 * 110.75388 * 156.26340 * 22 21 20 40 40 H 1.09002 * 110.48474 * 203.38051 * 23 22 21 41 41 H 1.08997 * 110.48851 * 80.73126 * 23 22 21 42 42 H 1.09001 * 110.03431 * 238.56982 * 24 20 10 43 43 H 1.09001 * 110.03348 * 359.95190 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3522 1.5251 -0.0005 5 7 4.1600 0.4779 -0.0005 6 6 5.4725 0.6536 -0.0016 7 6 6.0033 1.9269 -0.0021 8 7 5.2041 2.9824 -0.0022 9 6 3.8899 2.8173 -0.0011 10 7 3.0467 3.9248 -0.0017 11 6 2.1180 3.8787 -1.1389 12 6 1.0692 4.9484 -0.9747 13 1 1.0903 5.5973 -0.1116 14 6 0.0823 5.0980 -1.9258 15 7 0.0564 4.3075 -2.9765 16 14 -1.2181 6.4236 -1.7219 17 1 -0.7521 7.6774 -2.3669 18 1 -2.4828 5.9787 -2.3604 19 1 -1.4529 6.6682 -0.2761 20 6 3.8189 5.1744 -0.0028 21 6 4.7837 5.1983 -1.2064 22 6 6.0581 5.8867 -0.6580 23 6 6.1564 5.3263 0.7826 24 6 4.6917 5.2558 1.2618 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 6.1299 -0.2032 0.0029 31 1 7.0747 2.0632 -0.0026 32 1 2.6681 4.0483 -2.0644 33 1 1.6372 2.9011 -1.1760 34 1 -0.6379 4.4130 -3.6458 35 1 3.1447 6.0296 -0.0468 36 1 5.0094 4.1837 -1.5346 37 1 4.3583 5.7792 -2.0248 38 1 5.9364 6.9699 -0.6437 39 1 6.9327 5.6030 -1.2434 40 1 6.7329 6.0008 1.4158 41 1 6.6038 4.3324 0.7756 42 1 4.4416 6.1510 1.8311 43 1 4.5417 4.3685 1.8768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166536853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:53 Heat of formation + Delta-G solvation = 35.663415 kcal Electronic energy + Delta-G solvation = -24954.864701 eV Core-core repulsion = 21615.547973 eV Total energy + Delta-G solvation = -3339.316728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17620 -38.57171 -37.74960 -34.84012 -33.30302 -32.47524 -31.27287 -29.33646 -28.22131 -27.45678 -26.18617 -24.11633 -23.28015 -22.21189 -21.67668 -20.14709 -19.26373 -18.05491 -17.50733 -16.43769 -16.00897 -15.79949 -15.12488 -14.75999 -14.58699 -14.36094 -14.24705 -13.56661 -13.07239 -12.96999 -12.84030 -12.58149 -12.27381 -12.09593 -11.73849 -11.45434 -11.30799 -10.97001 -10.89353 -10.75778 -10.69348 -10.58831 -10.45880 -10.37542 -10.27044 -10.02892 -9.85612 -9.82329 -9.33554 -8.75451 -8.60957 -8.36441 -7.09571 -6.07434 -4.08548 1.37023 1.59907 3.29393 3.36107 3.37279 3.40536 4.05949 4.31301 4.46986 4.57555 4.77568 5.12955 5.24922 5.29485 5.31147 5.35927 5.40438 5.45632 5.59047 5.66574 5.75593 5.93956 6.01034 6.10171 6.18425 6.20535 6.21531 6.28766 6.32729 6.45503 6.48654 6.55821 6.60737 6.80395 6.96117 7.01002 7.19126 7.29471 7.46459 7.63929 7.79381 7.86511 8.08001 8.34220 8.41586 8.95736 9.54132 11.03415 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.007961 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.944971 B = 3516.480290 C = 5392.267779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.271 6.271 4 C 0.264 3.736 5 N -0.489 5.489 6 C 0.027 3.973 7 C 0.019 3.981 8 N -0.440 5.440 9 C 0.281 3.719 10 N -0.451 5.451 11 C 0.190 3.810 12 C -0.508 4.508 13 H 0.065 0.935 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.096 3.904 21 C -0.134 4.134 22 C -0.110 4.110 23 C -0.108 4.108 24 C -0.104 4.104 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.006 0.994 33 H 0.062 0.938 34 H 0.262 0.738 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.042 0.958 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.860 -5.266 5.484 12.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.175 6.175 4 C 0.074 3.926 5 N -0.219 5.219 6 C -0.130 4.130 7 C -0.138 4.138 8 N -0.162 5.162 9 C 0.041 3.959 10 N -0.166 5.166 11 C 0.068 3.932 12 C -0.547 4.547 13 H 0.083 0.917 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.012 4.012 21 C -0.173 4.173 22 C -0.148 4.148 23 C -0.146 4.146 24 C -0.142 4.142 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.176 0.824 31 H 0.177 0.823 32 H 0.023 0.977 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.155 -5.100 5.741 11.949 hybrid contribution -0.267 0.327 -0.585 0.722 sum 8.887 -4.773 5.156 11.329 Atomic orbital electron populations 1.21778 0.93016 1.01961 1.04161 1.22555 0.95117 0.82074 1.01370 1.86645 1.15122 1.28945 1.86829 1.20407 0.85467 0.89685 0.97002 1.67957 1.05647 1.32420 1.15872 1.22948 0.90357 0.98044 1.01630 1.23273 1.00703 0.89197 1.00676 1.69134 1.01927 1.31850 1.13263 1.20488 0.88912 0.90348 0.96128 1.59519 1.14761 0.99071 1.43245 1.20127 0.89269 1.00381 0.83400 1.21024 1.10387 1.16034 1.07245 0.91734 1.24916 0.97764 0.96386 0.95098 1.69963 1.34331 1.38180 1.10838 0.86498 0.80931 0.81642 0.78393 1.20686 1.21208 1.19714 1.22260 0.93339 0.91623 0.93949 1.22876 0.95335 1.01126 0.97995 1.22267 0.97442 0.98667 0.96427 1.22297 0.96238 1.00778 0.95291 1.22062 0.94738 1.00442 0.96963 0.91652 0.90914 0.91075 0.92250 0.92464 0.82438 0.82263 0.97659 0.92041 0.92854 0.88451 0.90703 0.92570 0.92640 0.92759 0.93895 0.90367 0.92911 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.28 37.16 0.38 -1.87 16 2 C 0.06 1.07 6.05 37.16 0.22 1.29 16 3 O -0.27 -5.65 7.42 -18.95 -0.14 -5.79 16 4 C 0.26 5.29 7.20 -16.72 -0.12 5.17 16 5 N -0.49 -8.54 9.39 -12.97 -0.12 -8.66 16 6 C 0.03 0.38 11.20 -17.40 -0.19 0.18 16 7 C 0.02 0.26 10.78 -17.42 -0.19 0.07 16 8 N -0.44 -7.59 3.12 -12.10 -0.04 -7.63 16 9 C 0.28 5.71 4.98 -154.48 -0.77 4.94 16 10 N -0.45 -10.02 4.44 -165.39 -0.73 -10.76 16 11 C 0.19 4.90 4.31 -4.98 -0.02 4.88 16 12 C -0.51 -13.93 8.43 -34.44 -0.29 -14.22 16 13 H 0.06 1.76 7.16 -52.48 -0.38 1.38 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 16 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.10 1.91 2.81 -66.60 -0.19 1.72 16 21 C -0.13 -2.50 4.73 -25.07 -0.12 -2.62 16 22 C -0.11 -1.66 6.90 -24.74 -0.17 -1.83 16 23 C -0.11 -1.59 6.18 -25.07 -0.15 -1.74 16 24 C -0.10 -1.77 5.72 -25.61 -0.15 -1.91 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 29 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 30 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.01 0.15 7.21 -51.93 -0.37 -0.22 16 33 H 0.06 1.70 5.34 -51.93 -0.28 1.42 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.10 2.09 6.76 -51.93 -0.35 1.74 16 36 H 0.07 1.49 5.42 -51.93 -0.28 1.21 16 37 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 1.14 5.94 -51.93 -0.31 0.83 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.07 6.99 -51.93 -0.36 0.71 16 LS Contribution 334.14 15.07 5.04 5.04 Total: -1.00 -29.91 334.14 -8.67 -38.58 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.54 Total: 2.46 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.85 Total: -4.36 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.16 Total: -52.19 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.14 Total: -5.79 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.91 -8.67 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166536853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.244 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds